Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21325 and DDA3937_RS21330 are separated by 42 nucleotides DDA3937_RS21330 and DDA3937_RS21335 are separated by 314 nucleotides
DDA3937_RS21325: DDA3937_RS21325 - helix-turn-helix domain-containing protein, at 4,858,378 to 4,859,355
_RS21325
DDA3937_RS21330: DDA3937_RS21330 - MBL fold metallo-hydrolase, at 4,859,398 to 4,860,171
_RS21330
DDA3937_RS21335: DDA3937_RS21335 - 4-hydroxyphenylpyruvate dioxygenase, at 4,860,486 to 4,861,571
_RS21335
Position (kb) 4859
4860
4861 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4858.443 kb on + strand at 4858.636 kb on + strand, within DDA3937_RS21325 at 4858.694 kb on + strand, within DDA3937_RS21325 at 4858.792 kb on + strand, within DDA3937_RS21325 at 4858.832 kb on + strand, within DDA3937_RS21325 at 4858.887 kb on + strand, within DDA3937_RS21325 at 4858.888 kb on - strand, within DDA3937_RS21325 at 4858.910 kb on + strand, within DDA3937_RS21325 at 4858.910 kb on + strand at 4858.911 kb on - strand, within DDA3937_RS21325 at 4858.911 kb on - strand, within DDA3937_RS21325 at 4858.999 kb on - strand, within DDA3937_RS21325 at 4859.024 kb on + strand, within DDA3937_RS21325 at 4859.024 kb on + strand at 4859.024 kb on + strand, within DDA3937_RS21325 at 4859.025 kb on - strand, within DDA3937_RS21325 at 4859.025 kb on - strand, within DDA3937_RS21325 at 4859.025 kb on - strand, within DDA3937_RS21325 at 4859.066 kb on + strand, within DDA3937_RS21325 at 4859.118 kb on + strand, within DDA3937_RS21325 at 4859.119 kb on - strand, within DDA3937_RS21325 at 4859.119 kb on - strand, within DDA3937_RS21325 at 4859.343 kb on + strand at 4859.343 kb on + strand at 4859.343 kb on + strand at 4859.343 kb on + strand at 4859.343 kb on + strand at 4859.343 kb on + strand at 4859.343 kb on + strand at 4859.343 kb on + strand at 4859.344 kb on - strand at 4859.344 kb on - strand at 4859.344 kb on - strand at 4859.344 kb on - strand at 4859.344 kb on - strand at 4859.344 kb on - strand at 4859.344 kb on - strand at 4859.344 kb on - strand at 4859.344 kb on - strand at 4859.347 kb on + strand at 4859.347 kb on + strand at 4859.347 kb on + strand at 4859.347 kb on + strand at 4859.347 kb on + strand at 4859.347 kb on + strand at 4859.348 kb on - strand at 4859.348 kb on - strand at 4859.348 kb on - strand at 4859.348 kb on - strand at 4859.348 kb on - strand at 4859.348 kb on - strand at 4859.348 kb on - strand at 4859.348 kb on - strand at 4859.348 kb on - strand at 4859.348 kb on - strand at 4859.348 kb on - strand at 4859.406 kb on + strand at 4859.406 kb on + strand at 4859.406 kb on + strand at 4859.407 kb on - strand at 4859.407 kb on - strand at 4859.407 kb on - strand at 4859.407 kb on - strand at 4859.527 kb on + strand, within DDA3937_RS21330 at 4859.547 kb on - strand, within DDA3937_RS21330 at 4859.547 kb on - strand, within DDA3937_RS21330 at 4859.628 kb on + strand, within DDA3937_RS21330 at 4859.628 kb on + strand at 4859.629 kb on - strand, within DDA3937_RS21330 at 4859.643 kb on + strand, within DDA3937_RS21330 at 4859.643 kb on + strand, within DDA3937_RS21330 at 4859.644 kb on - strand, within DDA3937_RS21330 at 4859.699 kb on + strand, within DDA3937_RS21330 at 4859.699 kb on + strand, within DDA3937_RS21330 at 4859.699 kb on + strand, within DDA3937_RS21330 at 4859.700 kb on - strand, within DDA3937_RS21330 at 4859.784 kb on + strand, within DDA3937_RS21330 at 4859.784 kb on + strand, within DDA3937_RS21330 at 4859.818 kb on - strand, within DDA3937_RS21330 at 4859.908 kb on + strand, within DDA3937_RS21330 at 4859.974 kb on - strand, within DDA3937_RS21330 at 4860.078 kb on - strand, within DDA3937_RS21330 at 4860.163 kb on - strand at 4860.165 kb on + strand at 4860.165 kb on + strand at 4860.165 kb on + strand at 4860.166 kb on - strand at 4860.166 kb on - strand at 4860.166 kb on - strand at 4860.177 kb on + strand at 4860.178 kb on - strand at 4860.184 kb on + strand at 4860.184 kb on + strand at 4860.184 kb on + strand at 4860.185 kb on - strand at 4860.206 kb on - strand at 4860.266 kb on - strand at 4860.267 kb on + strand at 4860.315 kb on + strand at 4860.316 kb on - strand at 4860.323 kb on + strand at 4860.324 kb on - strand at 4860.324 kb on - strand at 4860.324 kb on - strand at 4860.337 kb on + strand at 4860.353 kb on + strand at 4860.358 kb on + strand at 4860.468 kb on - strand at 4860.624 kb on - strand, within DDA3937_RS21335 at 4860.662 kb on + strand, within DDA3937_RS21335 at 4860.662 kb on + strand, within DDA3937_RS21335 at 4860.663 kb on - strand, within DDA3937_RS21335 at 4860.735 kb on + strand, within DDA3937_RS21335 at 4860.736 kb on - strand, within DDA3937_RS21335 at 4860.862 kb on - strand, within DDA3937_RS21335 at 4860.877 kb on - strand, within DDA3937_RS21335 at 4860.889 kb on + strand, within DDA3937_RS21335 at 4860.889 kb on + strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.890 kb on - strand, within DDA3937_RS21335 at 4860.912 kb on - strand, within DDA3937_RS21335 at 4860.912 kb on - strand, within DDA3937_RS21335 at 4860.960 kb on - strand, within DDA3937_RS21335 at 4860.988 kb on - strand, within DDA3937_RS21335 at 4861.091 kb on + strand, within DDA3937_RS21335 at 4861.091 kb on + strand, within DDA3937_RS21335 at 4861.091 kb on + strand, within DDA3937_RS21335 at 4861.133 kb on - strand, within DDA3937_RS21335
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,858,443 + -0.9 4,858,636 + DDA3937_RS21325 0.26 -0.0 4,858,694 + DDA3937_RS21325 0.32 -1.4 4,858,792 + DDA3937_RS21325 0.42 -1.0 4,858,832 + DDA3937_RS21325 0.46 +0.4 4,858,887 + DDA3937_RS21325 0.52 -0.4 4,858,888 - DDA3937_RS21325 0.52 -0.0 4,858,910 + DDA3937_RS21325 0.54 +0.7 4,858,910 + +3.3 4,858,911 - DDA3937_RS21325 0.54 -1.0 4,858,911 - DDA3937_RS21325 0.54 +1.4 4,858,999 - DDA3937_RS21325 0.63 +0.8 4,859,024 + DDA3937_RS21325 0.66 -1.7 4,859,024 + +1.0 4,859,024 + DDA3937_RS21325 0.66 +1.1 4,859,025 - DDA3937_RS21325 0.66 -0.3 4,859,025 - DDA3937_RS21325 0.66 -0.9 4,859,025 - DDA3937_RS21325 0.66 +0.8 4,859,066 + DDA3937_RS21325 0.70 +0.9 4,859,118 + DDA3937_RS21325 0.76 +1.6 4,859,119 - DDA3937_RS21325 0.76 -1.3 4,859,119 - DDA3937_RS21325 0.76 -0.3 4,859,343 + -1.5 4,859,343 + -0.4 4,859,343 + -1.1 4,859,343 + +2.2 4,859,343 + +0.9 4,859,343 + -0.1 4,859,343 + +0.1 4,859,343 + +0.3 4,859,344 - -1.5 4,859,344 - -1.0 4,859,344 - -0.6 4,859,344 - +1.0 4,859,344 - -1.8 4,859,344 - +1.0 4,859,344 - +0.7 4,859,344 - -0.0 4,859,344 - -0.4 4,859,347 + +0.3 4,859,347 + +0.2 4,859,347 + -1.4 4,859,347 + +1.0 4,859,347 + -0.6 4,859,347 + -1.9 4,859,348 - +1.7 4,859,348 - -1.0 4,859,348 - +0.1 4,859,348 - -0.4 4,859,348 - +0.1 4,859,348 - -1.0 4,859,348 - -0.5 4,859,348 - -0.7 4,859,348 - -0.4 4,859,348 - +1.4 4,859,348 - -0.2 4,859,406 + -0.6 4,859,406 + -1.0 4,859,406 + +0.7 4,859,407 - +0.2 4,859,407 - -1.6 4,859,407 - +0.5 4,859,407 - -0.5 4,859,527 + DDA3937_RS21330 0.17 -0.9 4,859,547 - DDA3937_RS21330 0.19 -1.0 4,859,547 - DDA3937_RS21330 0.19 +1.0 4,859,628 + DDA3937_RS21330 0.30 -0.6 4,859,628 + +2.8 4,859,629 - DDA3937_RS21330 0.30 +1.6 4,859,643 + DDA3937_RS21330 0.32 -1.0 4,859,643 + DDA3937_RS21330 0.32 -0.3 4,859,644 - DDA3937_RS21330 0.32 +1.1 4,859,699 + DDA3937_RS21330 0.39 +0.4 4,859,699 + DDA3937_RS21330 0.39 -0.6 4,859,699 + DDA3937_RS21330 0.39 +1.0 4,859,700 - DDA3937_RS21330 0.39 +0.8 4,859,784 + DDA3937_RS21330 0.50 -0.0 4,859,784 + DDA3937_RS21330 0.50 -0.9 4,859,818 - DDA3937_RS21330 0.54 -0.3 4,859,908 + DDA3937_RS21330 0.66 -0.8 4,859,974 - DDA3937_RS21330 0.74 +0.7 4,860,078 - DDA3937_RS21330 0.88 -0.8 4,860,163 - -1.8 4,860,165 + -0.4 4,860,165 + +0.7 4,860,165 + -0.4 4,860,166 - -0.0 4,860,166 - -0.4 4,860,166 - +0.8 4,860,177 + +0.6 4,860,178 - -1.0 4,860,184 + -0.2 4,860,184 + +0.1 4,860,184 + -2.0 4,860,185 - -1.6 4,860,206 - +0.5 4,860,266 - -1.5 4,860,267 + -1.2 4,860,315 + -0.4 4,860,316 - -0.8 4,860,323 + -0.1 4,860,324 - +0.6 4,860,324 - -0.9 4,860,324 - -0.6 4,860,337 + +0.2 4,860,353 + +0.5 4,860,358 + +0.1 4,860,468 - -1.6 4,860,624 - DDA3937_RS21335 0.13 -1.7 4,860,662 + DDA3937_RS21335 0.16 +0.2 4,860,662 + DDA3937_RS21335 0.16 -0.3 4,860,663 - DDA3937_RS21335 0.16 -0.2 4,860,735 + DDA3937_RS21335 0.23 -2.2 4,860,736 - DDA3937_RS21335 0.23 -2.0 4,860,862 - DDA3937_RS21335 0.35 +1.0 4,860,877 - DDA3937_RS21335 0.36 -1.4 4,860,889 + DDA3937_RS21335 0.37 -0.6 4,860,889 + DDA3937_RS21335 0.37 -0.2 4,860,890 - DDA3937_RS21335 0.37 -0.7 4,860,890 - DDA3937_RS21335 0.37 +0.1 4,860,890 - DDA3937_RS21335 0.37 +1.1 4,860,890 - DDA3937_RS21335 0.37 -1.6 4,860,890 - DDA3937_RS21335 0.37 +0.4 4,860,890 - DDA3937_RS21335 0.37 -0.0 4,860,912 - DDA3937_RS21335 0.39 -1.7 4,860,912 - DDA3937_RS21335 0.39 -0.4 4,860,960 - DDA3937_RS21335 0.44 -1.4 4,860,988 - DDA3937_RS21335 0.46 +0.0 4,861,091 + DDA3937_RS21335 0.56 -0.0 4,861,091 + DDA3937_RS21335 0.56 +0.1 4,861,091 + DDA3937_RS21335 0.56 -1.8 4,861,133 - DDA3937_RS21335 0.60 +0.4
Or see this region's nucleotide sequence