Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS21010

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,777,633	+		DDA3937_RS21000	0.71	-0.7
4,777,634	-		DDA3937_RS21000	0.71	+0.7
4,777,679	+		DDA3937_RS21000	0.77	-0.0
4,777,679	+		DDA3937_RS21000	0.77	-1.7
4,777,679	+		DDA3937_RS21000	0.77	-1.5
4,777,769	+		DDA3937_RS21000	0.89	-1.1
4,777,769	+		DDA3937_RS21000	0.89	-1.4
4,777,769	+		DDA3937_RS21000	0.89	+0.3
4,777,770	-				+1.5
4,777,770	-		DDA3937_RS21000	0.89	+0.0
4,777,770	-		DDA3937_RS21000	0.89	-0.8
4,777,770	-		DDA3937_RS21000	0.89	-2.7
4,777,770	-		DDA3937_RS21000	0.89	+0.3
4,777,770	-		DDA3937_RS21000	0.89	-0.0
4,777,773	+		DDA3937_RS21000	0.89	+0.3
4,777,773	+		DDA3937_RS21000	0.89	-0.0
4,777,773	+		DDA3937_RS21000	0.89	+0.3
4,777,774	-		DDA3937_RS21000	0.89	+0.5
4,777,774	-		DDA3937_RS21000	0.89	+0.0
4,777,886	-				-2.0
4,777,886	-				-0.2
4,777,993	+		DDA3937_RS21005	0.17	+0.7
4,777,993	+		DDA3937_RS21005	0.17	-0.4
4,777,993	+		DDA3937_RS21005	0.17	-1.5
4,777,993	+		DDA3937_RS21005	0.17	-0.2
4,777,994	-		DDA3937_RS21005	0.17	-0.6
4,777,994	-		DDA3937_RS21005	0.17	+1.1
4,777,994	-		DDA3937_RS21005	0.17	+1.0
4,777,994	-		DDA3937_RS21005	0.17	-1.2
4,777,994	-		DDA3937_RS21005	0.17	+1.4
4,777,994	-		DDA3937_RS21005	0.17	-1.0
4,777,994	-		DDA3937_RS21005	0.17	+2.3
4,778,083	+		DDA3937_RS21005	0.29	+0.2
4,778,100	+		DDA3937_RS21005	0.32	-0.8
4,778,101	-		DDA3937_RS21005	0.32	+0.7
4,778,200	+		DDA3937_RS21005	0.45	+0.0
4,778,201	-		DDA3937_RS21005	0.46	+0.2
4,778,201	-		DDA3937_RS21005	0.46	+0.7
4,778,266	+		DDA3937_RS21005	0.55	-2.2
4,778,266	+		DDA3937_RS21005	0.55	-0.1
4,778,267	-		DDA3937_RS21005	0.55	-0.3
4,778,394	+		DDA3937_RS21005	0.72	-1.2
4,778,400	+		DDA3937_RS21005	0.73	-2.8
4,778,418	+		DDA3937_RS21005	0.76	+0.4
4,778,418	+		DDA3937_RS21005	0.76	-0.3
4,778,418	+		DDA3937_RS21005	0.76	-0.2
4,778,418	+		DDA3937_RS21005	0.76	-1.6
4,778,419	-		DDA3937_RS21005	0.76	+0.6
4,778,419	-		DDA3937_RS21005	0.76	+0.5
4,778,419	-		DDA3937_RS21005	0.76	+0.2
4,778,419	-		DDA3937_RS21005	0.76	-1.1
4,778,419	-		DDA3937_RS21005	0.76	-1.5
4,778,485	+		DDA3937_RS21005	0.85	+0.6
4,778,486	-		DDA3937_RS21005	0.85	+1.2
4,778,560	+				+0.5
4,778,560	+				-0.6
4,778,560	+				-0.4
4,778,561	-				-0.8
4,778,561	-				+0.6
4,778,561	-				-0.3
4,778,561	-				-2.2
4,778,563	+				+0.1
4,778,563	+				-2.0
4,778,563	+				+0.4
4,778,563	+				+0.5
4,778,564	-				+1.0
4,778,564	-				-2.2
4,778,564	-				-0.5
4,778,699	+		DDA3937_RS21010	0.16	-0.8
4,778,700	-		DDA3937_RS21010	0.17	-0.6
4,778,742	+		DDA3937_RS21010	0.23	-2.0
4,778,742	+				+0.4
4,778,742	+		DDA3937_RS21010	0.23	+0.0
4,778,743	-		DDA3937_RS21010	0.23	-0.6
4,778,743	-		DDA3937_RS21010	0.23	-0.6
4,778,827	+		DDA3937_RS21010	0.36	-0.9
4,778,827	+		DDA3937_RS21010	0.36	-1.7
4,778,827	+		DDA3937_RS21010	0.36	+1.4
4,778,827	+		DDA3937_RS21010	0.36	+0.8
4,778,828	-		DDA3937_RS21010	0.37	-0.2
4,778,828	-		DDA3937_RS21010	0.37	-0.9
4,778,828	-		DDA3937_RS21010	0.37	-1.8
4,778,830	+		DDA3937_RS21010	0.37	+0.4
4,778,830	+		DDA3937_RS21010	0.37	-0.7
4,778,830	+		DDA3937_RS21010	0.37	-0.2
4,778,830	+		DDA3937_RS21010	0.37	-1.2
4,778,831	-		DDA3937_RS21010	0.37	-0.2
4,778,831	-		DDA3937_RS21010	0.37	+0.7
4,778,831	-		DDA3937_RS21010	0.37	-0.1
4,778,831	-		DDA3937_RS21010	0.37	+0.1
4,778,831	-		DDA3937_RS21010	0.37	-2.0
4,778,831	-		DDA3937_RS21010	0.37	-0.8
4,778,873	+		DDA3937_RS21010	0.44	-1.4
4,779,007	-		DDA3937_RS21010	0.65	-0.2
4,779,118	-		DDA3937_RS21010	0.82	-0.6
4,779,118	-		DDA3937_RS21010	0.82	+0.3
4,779,229	-				+1.4
4,779,317	+				-1.5
4,779,344	+				-0.5
4,779,344	+				+1.8
4,779,344	+				-0.5
4,779,508	+				+1.0
4,779,509	-				-0.3
4,779,527	+				+0.0
4,779,528	-				+1.6
4,779,798	-		DDA3937_RS21015	0.13	-0.4
4,779,965	+		DDA3937_RS21015	0.18	-1.7
4,779,965	+		DDA3937_RS21015	0.18	+1.0
4,779,966	-		DDA3937_RS21015	0.18	+0.7
4,779,966	-		DDA3937_RS21015	0.18	-2.0
4,780,092	-		DDA3937_RS21015	0.21	+0.5
4,780,092	-		DDA3937_RS21015	0.21	-0.3
4,780,129	+		DDA3937_RS21015	0.22	-1.2
4,780,130	-		DDA3937_RS21015	0.22	-1.4
4,780,130	-		DDA3937_RS21015	0.22	+0.6
4,780,153	+		DDA3937_RS21015	0.23	+0.7
4,780,153	+		DDA3937_RS21015	0.23	-0.6
4,780,153	+		DDA3937_RS21015	0.23	+2.0
4,780,153	+		DDA3937_RS21015	0.23	-0.8
4,780,153	+		DDA3937_RS21015	0.23	-0.2
4,780,153	+		DDA3937_RS21015	0.23	+0.4
4,780,153	+		DDA3937_RS21015	0.23	+1.0
4,780,153	+		DDA3937_RS21015	0.23	-1.6
4,780,153	+		DDA3937_RS21015	0.23	-1.2
4,780,153	+		DDA3937_RS21015	0.23	-1.4
4,780,153	+		DDA3937_RS21015	0.23	+1.8
4,780,154	-		DDA3937_RS21015	0.23	-1.0
4,780,154	-		DDA3937_RS21015	0.23	-0.2
4,780,154	-		DDA3937_RS21015	0.23	-0.0
4,780,154	-		DDA3937_RS21015	0.23	-0.8
4,780,154	-		DDA3937_RS21015	0.23	+0.4
4,780,154	-		DDA3937_RS21015	0.23	-2.0
4,780,154	-		DDA3937_RS21015	0.23	-0.8
4,780,154	-		DDA3937_RS21015	0.23	-2.2
4,780,154	-		DDA3937_RS21015	0.23	+0.8
4,780,160	-		DDA3937_RS21015	0.23	+0.1
4,780,160	-		DDA3937_RS21015	0.23	-0.6
4,780,160	-		DDA3937_RS21015	0.23	-0.9