Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20840

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,734,949	+				-0.7
4,734,949	+				+0.3
4,734,949	+				+1.4
4,734,950	-				-0.5
4,734,950	-				+1.5
4,735,018	-				-0.6
4,735,018	-				+1.1
4,735,140	+				-1.0
4,735,146	+				-0.8
4,735,157	-				+2.5
4,735,235	+				+1.9
4,735,235	+				+1.7
4,735,235	+				-1.8
4,735,235	+				-0.3
4,735,235	+				+1.3
4,735,235	+				-1.0
4,735,236	-				+1.9
4,735,236	-				+2.1
4,735,236	-				+1.0
4,735,236	-				+2.7
4,735,236	-				+4.0
4,735,236	-				+3.0
4,735,236	-				+1.9
4,735,236	-				+2.2
4,735,236	-				+3.5
4,735,236	-				+3.5
4,735,276	+				+0.2
4,735,277	-				+2.7
4,735,277	-				+2.3
4,735,338	+				+2.8
4,735,338	+				+2.0
4,735,338	+				+2.7
4,735,338	+				+4.3
4,735,338	+				+3.2
4,735,339	-				+2.7
4,735,339	-				+0.8
4,735,339	-				-0.4
4,735,339	-				+2.9
4,735,339	-				+3.7
4,735,346	+				+2.9
4,735,347	-				+2.4
4,735,347	-				+3.4
4,735,347	-				+1.4
4,735,347	-				+3.0
4,735,347	-				+3.7
4,735,347	-				-1.2
4,735,355	+				+2.6
4,735,361	+				+3.1
4,735,362	-				+2.4
4,735,362	-				+3.2
4,735,388	+		DDA3937_RS20835	0.12	+3.6
4,735,389	-		DDA3937_RS20835	0.12	+2.4
4,735,389	-		DDA3937_RS20835	0.12	+3.6
4,735,389	-		DDA3937_RS20835	0.12	+1.0
4,735,392	+		DDA3937_RS20835	0.13	+3.1
4,735,392	+		DDA3937_RS20835	0.13	-1.4
4,735,392	+		DDA3937_RS20835	0.13	+3.0
4,735,393	-		DDA3937_RS20835	0.13	+1.2
4,735,393	-		DDA3937_RS20835	0.13	+2.4
4,735,393	-		DDA3937_RS20835	0.13	+2.8
4,735,393	-		DDA3937_RS20835	0.13	+2.7
4,735,406	+		DDA3937_RS20835	0.15	+1.4
4,735,407	-		DDA3937_RS20835	0.15	+1.6
4,735,437	-		DDA3937_RS20835	0.21	+2.5
4,735,467	+		DDA3937_RS20835	0.26	+3.0
4,735,467	+		DDA3937_RS20835	0.26	+2.4
4,735,467	+		DDA3937_RS20835	0.26	+2.5
4,735,467	+		DDA3937_RS20835	0.26	+3.3
4,735,467	+		DDA3937_RS20835	0.26	+2.2
4,735,468	-		DDA3937_RS20835	0.26	+2.2
4,735,468	-		DDA3937_RS20835	0.26	+1.3
4,735,468	-		DDA3937_RS20835	0.26	+2.9
4,735,468	-		DDA3937_RS20835	0.26	+2.8
4,735,468	-		DDA3937_RS20835	0.26	+3.0
4,735,468	-		DDA3937_RS20835	0.26	+1.6
4,735,468	-		DDA3937_RS20835	0.26	+3.7
4,735,469	+		DDA3937_RS20835	0.26	+3.1
4,735,469	+		DDA3937_RS20835	0.26	+3.8
4,735,469	+		DDA3937_RS20835	0.26	+3.2
4,735,469	+		DDA3937_RS20835	0.26	+3.0
4,735,469	+		DDA3937_RS20835	0.26	+1.8
4,735,469	+		DDA3937_RS20835	0.26	+3.0
4,735,470	-		DDA3937_RS20835	0.27	+3.2
4,735,470	-		DDA3937_RS20835	0.27	-0.0
4,735,470	-		DDA3937_RS20835	0.27	+2.6
4,735,470	-		DDA3937_RS20835	0.27	+2.2
4,735,470	-		DDA3937_RS20835	0.27	+2.2
4,735,470	-		DDA3937_RS20835	0.27	+1.9
4,735,470	-		DDA3937_RS20835	0.27	+2.5
4,735,493	+		DDA3937_RS20835	0.31	+3.2
4,735,493	+		DDA3937_RS20835	0.31	+1.6
4,735,493	+		DDA3937_RS20835	0.31	+2.8
4,735,494	-		DDA3937_RS20835	0.31	+2.0
4,735,494	-		DDA3937_RS20835	0.31	+2.2
4,735,494	-		DDA3937_RS20835	0.31	+2.3
4,735,496	+		DDA3937_RS20835	0.31	+2.8
4,735,496	+		DDA3937_RS20835	0.31	+4.2
4,735,496	+				-0.0
4,735,497	-		DDA3937_RS20835	0.31	+2.8
4,735,541	+		DDA3937_RS20835	0.39	+3.1
4,735,541	+		DDA3937_RS20835	0.39	+4.0
4,735,542	-		DDA3937_RS20835	0.39	+2.3
4,735,566	+		DDA3937_RS20835	0.44	+4.2
4,735,566	+		DDA3937_RS20835	0.44	+3.5
4,735,566	+		DDA3937_RS20835	0.44	+1.5
4,735,566	+		DDA3937_RS20835	0.44	-0.6
4,735,567	-		DDA3937_RS20835	0.44	+3.2
4,735,567	-		DDA3937_RS20835	0.44	-0.0
4,735,567	-		DDA3937_RS20835	0.44	+2.7
4,735,567	-		DDA3937_RS20835	0.44	+1.3
4,735,567	-		DDA3937_RS20835	0.44	+2.4
4,735,574	+		DDA3937_RS20835	0.45	+0.7
4,735,574	+		DDA3937_RS20835	0.45	+3.3
4,735,574	+		DDA3937_RS20835	0.45	+1.0
4,735,575	-		DDA3937_RS20835	0.45	+4.8
4,735,600	+		DDA3937_RS20835	0.50	+1.2
4,735,601	-		DDA3937_RS20835	0.50	+1.5
4,735,719	+		DDA3937_RS20835	0.71	+3.5
4,735,719	+		DDA3937_RS20835	0.71	+3.7
4,735,720	-		DDA3937_RS20835	0.71	+3.6
4,735,720	-		DDA3937_RS20835	0.71	+4.1
4,735,740	+		DDA3937_RS20835	0.74	+0.6
4,735,811	+				+3.8
4,735,860	-				+2.0
4,735,862	+				+3.5
4,735,877	+				-0.7
4,735,877	+				+1.8
4,735,878	-				+1.7
4,735,881	+				+0.7
4,735,881	+				+1.4
4,735,882	-				-1.8
4,735,882	-				-0.9
4,735,885	+				+0.5
4,735,885	+				+1.0
4,735,885	+				+0.4
4,735,886	-				-0.0
4,735,887	-				-0.4
4,735,891	-				+2.2
4,736,021	+				-0.0
4,736,021	+				-0.1
4,736,021	+				+2.4
4,736,021	+				-0.2
4,736,021	+				-0.9
4,736,021	+				+0.2
4,736,022	-				+0.0
4,736,065	-		DDA3937_RS20840	0.11	-0.8
4,736,099	+		DDA3937_RS20840	0.14	-0.0
4,736,104	-		DDA3937_RS20840	0.15	-0.4
4,736,134	+		DDA3937_RS20840	0.17	-0.0
4,736,134	+				-0.0
4,736,134	+		DDA3937_RS20840	0.17	-0.1
4,736,134	+		DDA3937_RS20840	0.17	+0.7
4,736,135	-		DDA3937_RS20840	0.18	-0.2
4,736,135	-		DDA3937_RS20840	0.18	+0.3
4,736,135	-		DDA3937_RS20840	0.18	-0.8
4,736,293	+		DDA3937_RS20840	0.32	-1.0
4,736,293	+		DDA3937_RS20840	0.32	-1.4
4,736,294	-		DDA3937_RS20840	0.32	+0.0
4,736,294	-		DDA3937_RS20840	0.32	+0.4
4,736,432	+		DDA3937_RS20840	0.45	+0.0
4,736,433	-		DDA3937_RS20840	0.45	+0.1
4,736,470	+		DDA3937_RS20840	0.48	+1.4
4,736,470	+		DDA3937_RS20840	0.48	-0.9
4,736,471	-		DDA3937_RS20840	0.48	+0.7
4,736,471	-		DDA3937_RS20840	0.48	+1.8
4,736,521	+		DDA3937_RS20840	0.53	+0.5
4,736,521	+		DDA3937_RS20840	0.53	-0.5
4,736,521	+		DDA3937_RS20840	0.53	-1.8
4,736,521	+				+1.0
4,736,521	+		DDA3937_RS20840	0.53	+1.4
4,736,522	-		DDA3937_RS20840	0.53	+0.5
4,736,522	-		DDA3937_RS20840	0.53	+0.2
4,736,624	+		DDA3937_RS20840	0.62	+1.2
4,736,624	+		DDA3937_RS20840	0.62	+1.0
4,736,624	+		DDA3937_RS20840	0.62	-0.6
4,736,624	+		DDA3937_RS20840	0.62	+1.0
4,736,625	-		DDA3937_RS20840	0.63	-0.4
4,736,625	-		DDA3937_RS20840	0.63	+1.6
4,736,707	+		DDA3937_RS20840	0.70	+0.2
4,736,707	+		DDA3937_RS20840	0.70	-1.2
4,736,707	+		DDA3937_RS20840	0.70	-2.6
4,736,707	+		DDA3937_RS20840	0.70	-0.1
4,736,707	+		DDA3937_RS20840	0.70	-0.0
4,736,707	+		DDA3937_RS20840	0.70	-0.4
4,736,707	+		DDA3937_RS20840	0.70	+1.2
4,736,708	-		DDA3937_RS20840	0.70	-0.8
4,736,708	-		DDA3937_RS20840	0.70	-0.0
4,736,708	-		DDA3937_RS20840	0.70	-0.5
4,736,708	-				+2.0
4,736,708	-		DDA3937_RS20840	0.70	+0.5
4,736,708	-		DDA3937_RS20840	0.70	-1.0
4,736,708	-		DDA3937_RS20840	0.70	-1.1
4,736,708	-		DDA3937_RS20840	0.70	+0.6
4,736,758	+		DDA3937_RS20840	0.75	-1.6
4,736,758	+				-0.6
4,736,758	+		DDA3937_RS20840	0.75	-0.1
4,736,780	-		DDA3937_RS20840	0.77	-0.4
4,736,780	-		DDA3937_RS20840	0.77	-1.6
4,736,786	+		DDA3937_RS20840	0.77	-0.1
4,736,787	-		DDA3937_RS20840	0.77	-0.7
4,736,788	+		DDA3937_RS20840	0.78	-1.6
4,736,789	-		DDA3937_RS20840	0.78	+0.8
4,736,789	-		DDA3937_RS20840	0.78	-1.4
4,736,789	-		DDA3937_RS20840	0.78	-1.9
4,736,789	-		DDA3937_RS20840	0.78	+0.2
4,736,789	-		DDA3937_RS20840	0.78	-1.5
4,736,812	-		DDA3937_RS20840	0.80	-0.4
4,736,896	+		DDA3937_RS20840	0.87	-0.6
4,736,896	+		DDA3937_RS20840	0.87	+0.2
4,736,897	-		DDA3937_RS20840	0.88	+0.4
4,736,897	-		DDA3937_RS20840	0.88	-0.4
4,736,897	-		DDA3937_RS20840	0.88	-1.4
4,736,924	+				+0.7
4,736,924	+				-0.3
4,736,925	-				+0.0
4,736,925	-				+1.7
4,736,971	+				-0.4
4,736,971	+				+0.3
4,736,971	+				-2.0
4,736,971	+				-1.0
4,736,971	+				-0.8
4,736,972	-				-0.1
4,736,972	-				+0.5
4,736,972	-				+1.0
4,736,972	-				+0.1
4,736,972	-				-0.0
4,736,978	-				-0.6
4,736,978	-				+0.4
4,736,978	-				-0.4
4,736,978	-				+0.4
4,737,015	+				-0.0
4,737,015	+				-0.3
4,737,015	+				+2.7
4,737,015	+				+1.0
4,737,015	+				+0.8
4,737,016	-				-0.0
4,737,016	-				+0.9
4,737,016	-				-0.4
4,737,016	-				+0.4
4,737,016	-				-0.2
4,737,016	-				-0.4
4,737,020	+				+0.4
4,737,021	-				-0.6
4,737,021	-				-0.7
4,737,022	+				+0.1
4,737,022	+				+0.2
4,737,022	+				+0.5
4,737,022	+				+0.3
4,737,023	-				-1.0
4,737,023	-				+0.7
4,737,023	-				+0.7
4,737,023	-				-0.9
4,737,023	-				+0.2
4,737,023	-				-0.2
4,737,090	-				+0.1
4,737,143	+				-0.0
4,737,143	+				-0.5
4,737,264	+		DDA3937_RS20845	0.18	-2.4
4,737,349	-		DDA3937_RS20845	0.24	-0.2
4,737,367	+		DDA3937_RS20845	0.26	+1.5
4,737,367	+		DDA3937_RS20845	0.26	-1.3
4,737,368	-		DDA3937_RS20845	0.26	-0.0
4,737,368	-		DDA3937_RS20845	0.26	+0.7
4,737,368	-		DDA3937_RS20845	0.26	-0.7
4,737,368	-		DDA3937_RS20845	0.26	+1.3
4,737,368	-		DDA3937_RS20845	0.26	-1.3
4,737,389	+		DDA3937_RS20845	0.27	-0.8
4,737,389	+		DDA3937_RS20845	0.27	-0.6
4,737,511	-		DDA3937_RS20845	0.36	+1.2
4,737,532	+		DDA3937_RS20845	0.38	+0.3
4,737,533	-		DDA3937_RS20845	0.38	-0.4
4,737,533	-		DDA3937_RS20845	0.38	+0.1
4,737,765	+		DDA3937_RS20845	0.55	-0.4
4,737,765	+		DDA3937_RS20845	0.55	-0.8
4,737,766	-		DDA3937_RS20845	0.55	-1.3
4,737,766	-		DDA3937_RS20845	0.55	-2.2
4,737,766	-		DDA3937_RS20845	0.55	+0.3
4,737,818	+		DDA3937_RS20845	0.59	-0.9
4,737,818	+		DDA3937_RS20845	0.59	-2.6
4,737,818	+		DDA3937_RS20845	0.59	-0.3
4,737,819	-		DDA3937_RS20845	0.59	-0.5
4,737,819	-		DDA3937_RS20845	0.59	-0.7
4,737,845	+		DDA3937_RS20845	0.61	-1.4
4,737,845	+		DDA3937_RS20845	0.61	-0.5
4,737,845	+		DDA3937_RS20845	0.61	+0.5
4,737,845	+		DDA3937_RS20845	0.61	-0.2
4,737,845	+		DDA3937_RS20845	0.61	+0.3
4,737,846	-		DDA3937_RS20845	0.61	+0.8
4,737,846	-		DDA3937_RS20845	0.61	-0.6
4,737,944	+		DDA3937_RS20845	0.68	+0.3