Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20645

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS20640 and DDA3937_RS20645 are separated by 129 nucleotidesDDA3937_RS20645 and DDA3937_RS20650 are separated by 167 nucleotidesDDA3937_RS20650 and DDA3937_RS20655 are separated by 22 nucleotidesDDA3937_RS20655 and DDA3937_RS20660 are separated by 97 nucleotides DDA3937_RS20640: DDA3937_RS20640 - LysR family transcriptional regulator, at 4,695,931 to 4,696,839 _RS20640 DDA3937_RS20645: DDA3937_RS20645 - YicC family protein, at 4,696,969 to 4,697,832 _RS20645 DDA3937_RS20650: DDA3937_RS20650 - helix-turn-helix transcriptional regulator, at 4,698,000 to 4,698,317 _RS20650 DDA3937_RS20655: DDA3937_RS20655 - helix-turn-helix domain-containing protein, at 4,698,340 to 4,698,597 _RS20655 DDA3937_RS20660: DDA3937_RS20660 - helix-turn-helix transcriptional regulator, at 4,698,695 to 4,699,015 _RS20660 Position (kb) 4696 4697 4698Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4696.121 kb on + strand, within DDA3937_RS20640at 4696.144 kb on + strand, within DDA3937_RS20640at 4696.145 kb on - strand, within DDA3937_RS20640at 4696.262 kb on + strand, within DDA3937_RS20640at 4696.262 kb on + strand, within DDA3937_RS20640at 4696.263 kb on - strand, within DDA3937_RS20640at 4696.263 kb on - strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.422 kb on + strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.423 kb on - strand, within DDA3937_RS20640at 4696.583 kb on - strand, within DDA3937_RS20640at 4696.583 kb on - strandat 4696.594 kb on + strand, within DDA3937_RS20640at 4696.595 kb on - strand, within DDA3937_RS20640at 4696.595 kb on - strand, within DDA3937_RS20640at 4696.837 kb on + strandat 4696.933 kb on - strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.934 kb on + strandat 4696.935 kb on - strandat 4696.935 kb on - strandat 4696.935 kb on - strandat 4696.935 kb on - strandat 4696.935 kb on - strandat 4696.935 kb on - strandat 4696.939 kb on - strandat 4696.953 kb on + strandat 4696.960 kb on + strandat 4696.960 kb on + strandat 4696.960 kb on + strandat 4696.960 kb on + strandat 4696.960 kb on + strandat 4696.960 kb on + strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.961 kb on - strandat 4696.978 kb on - strandat 4696.990 kb on + strandat 4697.060 kb on - strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strandat 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.071 kb on + strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.072 kb on - strand, within DDA3937_RS20645at 4697.103 kb on - strand, within DDA3937_RS20645at 4697.103 kb on - strand, within DDA3937_RS20645at 4697.391 kb on + strand, within DDA3937_RS20645at 4697.391 kb on + strandat 4697.392 kb on - strand, within DDA3937_RS20645at 4697.392 kb on - strand, within DDA3937_RS20645at 4697.392 kb on - strand, within DDA3937_RS20645at 4697.392 kb on - strand, within DDA3937_RS20645at 4697.392 kb on - strand, within DDA3937_RS20645at 4697.392 kb on - strand, within DDA3937_RS20645at 4697.586 kb on - strand, within DDA3937_RS20645at 4697.653 kb on + strand, within DDA3937_RS20645at 4697.700 kb on + strand, within DDA3937_RS20645at 4697.700 kb on + strand, within DDA3937_RS20645at 4697.701 kb on - strand, within DDA3937_RS20645at 4697.927 kb on + strandat 4697.928 kb on - strandat 4697.928 kb on - strandat 4697.950 kb on + strandat 4697.984 kb on + strandat 4698.026 kb on + strandat 4698.027 kb on - strandat 4698.027 kb on - strandat 4698.103 kb on + strand, within DDA3937_RS20650at 4698.104 kb on - strand, within DDA3937_RS20650at 4698.165 kb on - strand, within DDA3937_RS20650at 4698.219 kb on + strand, within DDA3937_RS20650at 4698.219 kb on + strand, within DDA3937_RS20650at 4698.253 kb on + strand, within DDA3937_RS20650at 4698.254 kb on - strand, within DDA3937_RS20650at 4698.254 kb on - strand, within DDA3937_RS20650at 4698.254 kb on - strand, within DDA3937_RS20650at 4698.254 kb on - strand, within DDA3937_RS20650at 4698.254 kb on - strand, within DDA3937_RS20650at 4698.311 kb on + strandat 4698.311 kb on + strandat 4698.358 kb on + strandat 4698.358 kb on + strandat 4698.398 kb on + strand, within DDA3937_RS20655at 4698.399 kb on - strand, within DDA3937_RS20655at 4698.401 kb on + strand, within DDA3937_RS20655at 4698.402 kb on - strand, within DDA3937_RS20655at 4698.402 kb on - strand, within DDA3937_RS20655at 4698.416 kb on - strand, within DDA3937_RS20655at 4698.543 kb on + strand, within DDA3937_RS20655at 4698.543 kb on + strand, within DDA3937_RS20655at 4698.543 kb on + strand, within DDA3937_RS20655at 4698.544 kb on - strand, within DDA3937_RS20655at 4698.544 kb on - strand, within DDA3937_RS20655at 4698.544 kb on - strand, within DDA3937_RS20655at 4698.544 kb on - strand, within DDA3937_RS20655at 4698.608 kb on - strandat 4698.608 kb on - strandat 4698.608 kb on - strandat 4698.739 kb on + strand, within DDA3937_RS20660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
4,696,121 + DDA3937_RS20640 0.21 +1.1
4,696,144 + DDA3937_RS20640 0.23 -0.2
4,696,145 - DDA3937_RS20640 0.24 -0.6
4,696,262 + DDA3937_RS20640 0.36 -0.6
4,696,262 + DDA3937_RS20640 0.36 +0.3
4,696,263 - DDA3937_RS20640 0.37 +0.6
4,696,263 - DDA3937_RS20640 0.37 -0.2
4,696,422 + DDA3937_RS20640 0.54 +0.6
4,696,422 + DDA3937_RS20640 0.54 -1.7
4,696,422 + DDA3937_RS20640 0.54 -1.6
4,696,422 + DDA3937_RS20640 0.54 -0.1
4,696,422 + DDA3937_RS20640 0.54 -0.8
4,696,422 + DDA3937_RS20640 0.54 -0.5
4,696,422 + DDA3937_RS20640 0.54 -0.2
4,696,422 + DDA3937_RS20640 0.54 -1.0
4,696,422 + DDA3937_RS20640 0.54 -0.6
4,696,422 + DDA3937_RS20640 0.54 -0.0
4,696,423 - DDA3937_RS20640 0.54 +0.9
4,696,423 - DDA3937_RS20640 0.54 -2.1
4,696,423 - DDA3937_RS20640 0.54 +1.6
4,696,423 - DDA3937_RS20640 0.54 -1.3
4,696,423 - DDA3937_RS20640 0.54 -2.4
4,696,423 - DDA3937_RS20640 0.54 -1.1
4,696,423 - DDA3937_RS20640 0.54 +0.6
4,696,423 - DDA3937_RS20640 0.54 -0.6
4,696,423 - DDA3937_RS20640 0.54 -0.2
4,696,583 - DDA3937_RS20640 0.72 +1.2
4,696,583 - -0.1
4,696,594 + DDA3937_RS20640 0.73 -0.2
4,696,595 - DDA3937_RS20640 0.73 -1.6
4,696,595 - DDA3937_RS20640 0.73 -0.6
4,696,837 + +2.8
4,696,933 - +1.7
4,696,934 + +1.9
4,696,934 + -1.2
4,696,934 + -1.4
4,696,934 + -0.1
4,696,934 + +0.2
4,696,934 + -0.1
4,696,934 + -1.1
4,696,934 + -0.7
4,696,935 - +0.6
4,696,935 - +0.9
4,696,935 - +1.3
4,696,935 - -2.1
4,696,935 - +0.4
4,696,935 - +1.9
4,696,939 - +0.9
4,696,953 + -0.4
4,696,960 + +1.9
4,696,960 + -1.4
4,696,960 + -2.1
4,696,960 + +1.7
4,696,960 + +0.5
4,696,960 + -0.1
4,696,961 - -1.5
4,696,961 - +0.9
4,696,961 - +3.1
4,696,961 - -0.2
4,696,961 - -1.1
4,696,961 - -0.7
4,696,961 - +0.9
4,696,961 - +0.4
4,696,978 - -0.6
4,696,990 + +0.5
4,697,060 - DDA3937_RS20645 0.11 +0.2
4,697,071 + DDA3937_RS20645 0.12 +0.9
4,697,071 + DDA3937_RS20645 0.12 +1.2
4,697,071 + -0.1
4,697,071 + DDA3937_RS20645 0.12 +0.3
4,697,071 + DDA3937_RS20645 0.12 -0.8
4,697,071 + DDA3937_RS20645 0.12 +1.2
4,697,071 + DDA3937_RS20645 0.12 -0.4
4,697,071 + DDA3937_RS20645 0.12 +1.5
4,697,071 + DDA3937_RS20645 0.12 +0.0
4,697,072 - DDA3937_RS20645 0.12 -1.6
4,697,072 - DDA3937_RS20645 0.12 +0.3
4,697,072 - DDA3937_RS20645 0.12 +0.4
4,697,072 - DDA3937_RS20645 0.12 -0.6
4,697,072 - DDA3937_RS20645 0.12 +1.1
4,697,072 - DDA3937_RS20645 0.12 +2.1
4,697,072 - DDA3937_RS20645 0.12 -0.6
4,697,103 - DDA3937_RS20645 0.16 -0.1
4,697,103 - DDA3937_RS20645 0.16 +0.5
4,697,391 + DDA3937_RS20645 0.49 +1.9
4,697,391 + -1.4
4,697,392 - DDA3937_RS20645 0.49 +0.6
4,697,392 - DDA3937_RS20645 0.49 +1.3
4,697,392 - DDA3937_RS20645 0.49 +0.3
4,697,392 - DDA3937_RS20645 0.49 +0.2
4,697,392 - DDA3937_RS20645 0.49 +0.5
4,697,392 - DDA3937_RS20645 0.49 +0.1
4,697,586 - DDA3937_RS20645 0.71 -0.2
4,697,653 + DDA3937_RS20645 0.79 +3.5
4,697,700 + DDA3937_RS20645 0.85 +0.4
4,697,700 + DDA3937_RS20645 0.85 +1.5
4,697,701 - DDA3937_RS20645 0.85 -1.3
4,697,927 + -0.1
4,697,928 - -0.2
4,697,928 - -0.4
4,697,950 + +0.5
4,697,984 + +0.6
4,698,026 + +0.5
4,698,027 - +1.9
4,698,027 - -0.0
4,698,103 + DDA3937_RS20650 0.32 +0.6
4,698,104 - DDA3937_RS20650 0.33 +0.0
4,698,165 - DDA3937_RS20650 0.52 -0.1
4,698,219 + DDA3937_RS20650 0.69 -0.6
4,698,219 + DDA3937_RS20650 0.69 +0.5
4,698,253 + DDA3937_RS20650 0.80 -0.2
4,698,254 - DDA3937_RS20650 0.80 -0.6
4,698,254 - DDA3937_RS20650 0.80 -1.5
4,698,254 - DDA3937_RS20650 0.80 -1.7
4,698,254 - DDA3937_RS20650 0.80 -2.1
4,698,254 - DDA3937_RS20650 0.80 -0.1
4,698,311 + +0.6
4,698,311 + -1.5
4,698,358 + -0.2
4,698,358 + -0.0
4,698,398 + DDA3937_RS20655 0.22 -0.6
4,698,399 - DDA3937_RS20655 0.23 -0.1
4,698,401 + DDA3937_RS20655 0.24 -0.8
4,698,402 - DDA3937_RS20655 0.24 -0.5
4,698,402 - DDA3937_RS20655 0.24 +1.8
4,698,416 - DDA3937_RS20655 0.29 -0.7
4,698,543 + DDA3937_RS20655 0.79 -0.1
4,698,543 + DDA3937_RS20655 0.79 -0.4
4,698,543 + DDA3937_RS20655 0.79 -0.3
4,698,544 - DDA3937_RS20655 0.79 -1.4
4,698,544 - DDA3937_RS20655 0.79 -0.5
4,698,544 - DDA3937_RS20655 0.79 -0.9
4,698,544 - DDA3937_RS20655 0.79 -0.7
4,698,608 - +0.1
4,698,608 - +0.6
4,698,608 - -0.1
4,698,739 + DDA3937_RS20660 0.14 -0.8

Or see this region's nucleotide sequence