Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20565

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,676,474	+				-0.6
4,676,609	-		DDA3937_RS20560	0.21	+1.7
4,677,090	+		DDA3937_RS20560	0.71	+1.3
4,677,091	-		DDA3937_RS20560	0.71	-0.6
4,677,201	+		DDA3937_RS20560	0.83	+1.2
4,677,333	+				+1.2
4,677,342	+				+1.0
4,677,342	+				+0.9
4,677,342	+				-0.4
4,677,342	+				-0.6
4,677,342	+				+2.8
4,677,342	+				+0.8
4,677,342	+				+1.2
4,677,342	+				+1.5
4,677,342	+				+2.4
4,677,342	+				+1.5
4,677,342	+				+1.2
4,677,342	+				+0.8
4,677,343	-				-2.3
4,677,343	-				+0.2
4,677,343	-				-1.9
4,677,344	+				+1.1
4,677,376	+				+0.3
4,677,784	-		DDA3937_RS20565	0.21	+0.7
4,677,784	-		DDA3937_RS20565	0.21	-0.2
4,677,868	+		DDA3937_RS20565	0.25	-0.3
4,677,869	-		DDA3937_RS20565	0.25	+1.1
4,677,908	+		DDA3937_RS20565	0.27	-0.9
4,677,909	-		DDA3937_RS20565	0.27	+0.4
4,678,024	-		DDA3937_RS20565	0.33	-0.5
4,678,142	+		DDA3937_RS20565	0.40	-0.4
4,678,143	-		DDA3937_RS20565	0.40	-0.3
4,678,143	-		DDA3937_RS20565	0.40	-0.9
4,678,143	-		DDA3937_RS20565	0.40	-0.0
4,678,143	-		DDA3937_RS20565	0.40	+0.1
4,678,143	-		DDA3937_RS20565	0.40	+3.8
4,678,205	+		DDA3937_RS20565	0.43	+0.3
4,678,205	+		DDA3937_RS20565	0.43	-1.3
4,678,205	+		DDA3937_RS20565	0.43	-0.6
4,678,205	+		DDA3937_RS20565	0.43	+0.1
4,678,205	+		DDA3937_RS20565	0.43	-0.3
4,678,206	-		DDA3937_RS20565	0.43	-0.2
4,678,206	-		DDA3937_RS20565	0.43	+1.5
4,678,267	+		DDA3937_RS20565	0.46	+0.9
4,678,318	+		DDA3937_RS20565	0.49	+0.4
4,678,319	-		DDA3937_RS20565	0.49	+0.4
4,678,373	+		DDA3937_RS20565	0.52	-0.4
4,678,373	+		DDA3937_RS20565	0.52	-0.1
4,678,373	+		DDA3937_RS20565	0.52	-1.2
4,678,374	-		DDA3937_RS20565	0.52	+1.0
4,678,374	-		DDA3937_RS20565	0.52	+0.5
4,678,374	-		DDA3937_RS20565	0.52	-0.2
4,678,826	-		DDA3937_RS20565	0.76	+0.2
4,679,024	+		DDA3937_RS20565	0.86	+1.3
4,679,024	+		DDA3937_RS20565	0.86	+1.8
4,679,024	+		DDA3937_RS20565	0.86	+1.4
4,679,024	+		DDA3937_RS20565	0.86	+1.6
4,679,024	+		DDA3937_RS20565	0.86	+1.9
4,679,024	+		DDA3937_RS20565	0.86	+1.1
4,679,025	-		DDA3937_RS20565	0.86	-0.5
4,679,025	-		DDA3937_RS20565	0.86	+0.4
4,679,025	-		DDA3937_RS20565	0.86	-2.0
4,679,087	+		DDA3937_RS20565	0.89	+1.3
4,679,087	+		DDA3937_RS20565	0.89	+1.0
4,679,087	+		DDA3937_RS20565	0.89	+1.0
4,679,087	+		DDA3937_RS20565	0.89	+1.4
4,679,087	+		DDA3937_RS20565	0.89	+1.5
4,679,088	-		DDA3937_RS20565	0.89	+1.6
4,679,088	-		DDA3937_RS20565	0.89	-1.9
4,679,088	-		DDA3937_RS20565	0.89	-0.6
4,679,138	+				+1.6
4,679,278	+				+1.0
4,679,285	+				+2.0
4,679,285	+				+1.8
4,679,293	-				+0.5
4,679,302	+				+1.1
4,679,302	+				+1.8
4,679,309	+				+2.6
4,679,319	+				-0.0
4,679,319	+				+0.8
4,679,319	+				+3.0
4,679,319	+				+1.4
4,679,319	+				+0.9
4,679,319	+				+1.7
4,679,319	+				+0.5
4,679,319	+				+1.6
4,679,319	+				+0.5
4,679,320	-				-1.3
4,679,320	-				+0.2
4,679,320	-				+0.0
4,679,320	-				-0.7
4,679,320	-				+0.7
4,679,320	-				-0.3
4,679,320	-				-1.3
4,679,320	-				+0.0
4,679,322	+				+0.9
4,679,322	+				+1.0
4,679,322	+				+1.0
4,679,323	-				-0.5
4,679,323	-				+0.2
4,679,323	-				+0.2
4,679,379	+				+1.2
4,679,379	+				-2.5
4,679,379	+				+0.6
4,679,379	+				-0.6
4,679,380	-				-2.6
4,679,380	-				-0.2
4,679,380	-				+0.4
4,679,404	+				+0.6
4,679,404	+				-0.2
4,679,405	-				-0.0
4,679,407	+				-0.9
4,679,421	-				-1.6
4,679,461	-				+0.4
4,679,461	-				+0.1
4,679,486	+				+0.1
4,679,487	-				-0.3
4,679,495	+				+0.7
4,679,496	-				-0.8
4,679,496	-				+0.9
4,679,496	-				+0.4
4,679,581	+				-0.1
4,679,581	+				-2.0
4,679,582	-				-2.1
4,679,582	-				-1.5
4,679,582	-				-0.4
4,679,632	+		DDA3937_RS20570	0.10	+0.4
4,679,632	+		DDA3937_RS20570	0.10	+0.1
4,679,632	+		DDA3937_RS20570	0.10	+0.7
4,679,632	+		DDA3937_RS20570	0.10	+0.7
4,679,633	-		DDA3937_RS20570	0.10	+0.8
4,679,633	-		DDA3937_RS20570	0.10	-1.6
4,679,633	-		DDA3937_RS20570	0.10	+0.4
4,679,633	-		DDA3937_RS20570	0.10	-0.2
4,679,633	-		DDA3937_RS20570	0.10	-1.5
4,679,888	+		DDA3937_RS20570	0.27	+0.3
4,679,889	-				-0.6
4,680,094	+		DDA3937_RS20570	0.40	-1.0
4,680,095	-		DDA3937_RS20570	0.40	-0.2
4,680,103	+		DDA3937_RS20570	0.40	-1.0
4,680,103	+		DDA3937_RS20570	0.40	-0.3
4,680,104	-		DDA3937_RS20570	0.41	-0.2
4,680,104	-		DDA3937_RS20570	0.41	-0.9
4,680,104	-		DDA3937_RS20570	0.41	+0.3
4,680,104	-		DDA3937_RS20570	0.41	-0.1
4,680,145	+		DDA3937_RS20570	0.43	+0.5
4,680,146	-		DDA3937_RS20570	0.43	+0.7
4,680,146	-		DDA3937_RS20570	0.43	+0.4
4,680,205	-		DDA3937_RS20570	0.47	+0.0
4,680,208	+		DDA3937_RS20570	0.47	+1.0
4,680,209	-		DDA3937_RS20570	0.47	-0.3
4,680,209	-		DDA3937_RS20570	0.47	-0.5
4,680,283	+		DDA3937_RS20570	0.52	-0.3
4,680,283	+		DDA3937_RS20570	0.52	-1.3
4,680,283	+		DDA3937_RS20570	0.52	+0.2
4,680,283	+		DDA3937_RS20570	0.52	-0.6
4,680,283	+		DDA3937_RS20570	0.52	-1.6
4,680,283	+		DDA3937_RS20570	0.52	-0.3
4,680,284	-		DDA3937_RS20570	0.52	-0.9
4,680,284	-		DDA3937_RS20570	0.52	-0.0
4,680,284	-		DDA3937_RS20570	0.52	-0.0
4,680,284	-		DDA3937_RS20570	0.52	+0.1
4,680,284	-		DDA3937_RS20570	0.52	-0.2
4,680,284	-		DDA3937_RS20570	0.52	-0.4