Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20035

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS20030 and DDA3937_RS20035 overlap by 4 nucleotidesDDA3937_RS20035 and DDA3937_RS20040 overlap by 1 nucleotides DDA3937_RS20030: DDA3937_RS20030 - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 4,557,926 to 4,559,011 _RS20030 DDA3937_RS20035: DDA3937_RS20035 - lipid III flippase WzxE, at 4,559,008 to 4,560,258 _RS20035 DDA3937_RS20040: DDA3937_RS20040 - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 4,560,258 to 4,561,388 _RS20040 Position (kb) 4559 4560 4561Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4558.124 kb on - strand, within DDA3937_RS20030at 4558.145 kb on + strand, within DDA3937_RS20030at 4558.146 kb on - strand, within DDA3937_RS20030at 4558.326 kb on + strand, within DDA3937_RS20030at 4558.326 kb on + strand, within DDA3937_RS20030at 4558.326 kb on + strand, within DDA3937_RS20030at 4558.326 kb on + strand, within DDA3937_RS20030at 4558.326 kb on + strand, within DDA3937_RS20030at 4558.326 kb on + strand, within DDA3937_RS20030at 4558.326 kb on + strand, within DDA3937_RS20030at 4558.327 kb on - strand, within DDA3937_RS20030at 4558.327 kb on - strand, within DDA3937_RS20030at 4558.327 kb on - strand, within DDA3937_RS20030at 4558.327 kb on - strandat 4558.521 kb on + strand, within DDA3937_RS20030at 4558.563 kb on + strand, within DDA3937_RS20030at 4558.623 kb on - strand, within DDA3937_RS20030at 4558.666 kb on - strand, within DDA3937_RS20030at 4558.666 kb on - strand, within DDA3937_RS20030at 4558.936 kb on + strandat 4558.936 kb on + strandat 4558.937 kb on - strandat 4558.937 kb on - strandat 4558.937 kb on - strandat 4558.942 kb on + strandat 4559.024 kb on + strandat 4559.024 kb on + strandat 4559.024 kb on + strandat 4559.025 kb on - strandat 4559.025 kb on - strandat 4559.058 kb on - strandat 4559.058 kb on - strandat 4559.066 kb on + strandat 4559.066 kb on + strandat 4559.066 kb on + strandat 4559.066 kb on + strandat 4559.066 kb on + strandat 4559.066 kb on + strandat 4559.067 kb on - strandat 4559.067 kb on - strandat 4559.067 kb on - strandat 4559.067 kb on - strandat 4559.067 kb on - strandat 4559.067 kb on - strandat 4559.067 kb on - strandat 4559.067 kb on - strandat 4559.067 kb on - strandat 4559.078 kb on + strandat 4559.078 kb on + strandat 4559.078 kb on + strandat 4559.171 kb on + strand, within DDA3937_RS20035at 4559.205 kb on - strand, within DDA3937_RS20035at 4559.224 kb on + strand, within DDA3937_RS20035at 4559.233 kb on + strand, within DDA3937_RS20035at 4559.234 kb on - strand, within DDA3937_RS20035at 4559.328 kb on + strand, within DDA3937_RS20035at 4559.328 kb on + strand, within DDA3937_RS20035at 4559.329 kb on - strand, within DDA3937_RS20035at 4559.329 kb on - strand, within DDA3937_RS20035at 4559.332 kb on + strand, within DDA3937_RS20035at 4559.332 kb on + strand, within DDA3937_RS20035at 4559.333 kb on - strand, within DDA3937_RS20035at 4559.333 kb on - strand, within DDA3937_RS20035at 4559.333 kb on - strand, within DDA3937_RS20035at 4559.333 kb on - strand, within DDA3937_RS20035at 4559.404 kb on - strand, within DDA3937_RS20035at 4559.435 kb on + strand, within DDA3937_RS20035at 4559.436 kb on - strand, within DDA3937_RS20035at 4559.436 kb on - strand, within DDA3937_RS20035at 4559.522 kb on + strand, within DDA3937_RS20035at 4559.522 kb on + strand, within DDA3937_RS20035at 4559.523 kb on - strand, within DDA3937_RS20035at 4559.555 kb on + strand, within DDA3937_RS20035at 4559.555 kb on + strand, within DDA3937_RS20035at 4559.598 kb on + strand, within DDA3937_RS20035at 4559.599 kb on - strand, within DDA3937_RS20035at 4559.684 kb on - strand, within DDA3937_RS20035at 4559.742 kb on + strand, within DDA3937_RS20035at 4559.744 kb on + strand, within DDA3937_RS20035at 4559.744 kb on + strand, within DDA3937_RS20035at 4559.744 kb on + strand, within DDA3937_RS20035at 4559.744 kb on + strand, within DDA3937_RS20035at 4559.745 kb on - strand, within DDA3937_RS20035at 4559.745 kb on - strand, within DDA3937_RS20035at 4559.745 kb on - strand, within DDA3937_RS20035at 4559.745 kb on - strand, within DDA3937_RS20035at 4559.772 kb on - strand, within DDA3937_RS20035at 4559.772 kb on - strand, within DDA3937_RS20035at 4560.061 kb on + strand, within DDA3937_RS20035at 4560.131 kb on + strand, within DDA3937_RS20035at 4560.131 kb on + strand, within DDA3937_RS20035at 4560.131 kb on + strand, within DDA3937_RS20035at 4560.132 kb on - strand, within DDA3937_RS20035at 4560.132 kb on - strand, within DDA3937_RS20035at 4560.293 kb on + strandat 4560.320 kb on - strandat 4560.320 kb on - strandat 4560.320 kb on - strandat 4560.320 kb on - strandat 4560.363 kb on - strandat 4560.425 kb on + strand, within DDA3937_RS20040at 4560.425 kb on + strand, within DDA3937_RS20040at 4560.425 kb on + strand, within DDA3937_RS20040at 4560.425 kb on + strand, within DDA3937_RS20040at 4560.426 kb on - strand, within DDA3937_RS20040at 4560.426 kb on - strand, within DDA3937_RS20040at 4560.426 kb on - strandat 4560.426 kb on - strand, within DDA3937_RS20040at 4560.426 kb on - strand, within DDA3937_RS20040at 4560.426 kb on - strand, within DDA3937_RS20040at 4560.428 kb on - strand, within DDA3937_RS20040at 4560.461 kb on + strand, within DDA3937_RS20040at 4560.598 kb on + strand, within DDA3937_RS20040at 4560.598 kb on + strand, within DDA3937_RS20040at 4560.598 kb on + strand, within DDA3937_RS20040at 4560.598 kb on + strand, within DDA3937_RS20040at 4560.599 kb on - strand, within DDA3937_RS20040at 4560.599 kb on - strand, within DDA3937_RS20040at 4560.599 kb on - strand, within DDA3937_RS20040at 4560.665 kb on - strand, within DDA3937_RS20040at 4560.665 kb on - strand, within DDA3937_RS20040at 4560.665 kb on - strand, within DDA3937_RS20040at 4560.692 kb on - strand, within DDA3937_RS20040at 4560.716 kb on + strand, within DDA3937_RS20040at 4560.716 kb on + strand, within DDA3937_RS20040at 4560.716 kb on + strand, within DDA3937_RS20040at 4560.717 kb on - strand, within DDA3937_RS20040at 4560.717 kb on - strand, within DDA3937_RS20040at 4560.717 kb on - strand, within DDA3937_RS20040at 4560.718 kb on + strand, within DDA3937_RS20040at 4560.718 kb on + strand, within DDA3937_RS20040at 4560.718 kb on + strand, within DDA3937_RS20040at 4560.718 kb on + strand, within DDA3937_RS20040at 4560.718 kb on + strand, within DDA3937_RS20040at 4560.719 kb on - strand, within DDA3937_RS20040at 4560.719 kb on - strand, within DDA3937_RS20040at 4560.719 kb on - strand, within DDA3937_RS20040at 4560.719 kb on - strand, within DDA3937_RS20040at 4560.719 kb on - strand, within DDA3937_RS20040at 4560.719 kb on - strand, within DDA3937_RS20040at 4560.719 kb on - strand, within DDA3937_RS20040at 4560.719 kb on - strand, within DDA3937_RS20040at 4560.719 kb on - strand, within DDA3937_RS20040at 4560.719 kb on - strand, within DDA3937_RS20040at 4560.722 kb on + strand, within DDA3937_RS20040at 4560.723 kb on - strand, within DDA3937_RS20040at 4560.841 kb on + strand, within DDA3937_RS20040at 4560.841 kb on + strand, within DDA3937_RS20040at 4560.841 kb on + strand, within DDA3937_RS20040at 4560.908 kb on - strand, within DDA3937_RS20040at 4561.006 kb on + strand, within DDA3937_RS20040at 4561.007 kb on - strand, within DDA3937_RS20040at 4561.007 kb on - strand, within DDA3937_RS20040at 4561.153 kb on + strand, within DDA3937_RS20040at 4561.153 kb on + strand, within DDA3937_RS20040at 4561.154 kb on - strand, within DDA3937_RS20040at 4561.154 kb on - strand, within DDA3937_RS20040at 4561.154 kb on - strand, within DDA3937_RS20040at 4561.242 kb on + strand, within DDA3937_RS20040at 4561.242 kb on + strand, within DDA3937_RS20040at 4561.242 kb on + strand, within DDA3937_RS20040at 4561.243 kb on - strand, within DDA3937_RS20040at 4561.243 kb on - strand, within DDA3937_RS20040

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,558,124 - DDA3937_RS20030 0.18 -1.2
4,558,145 + DDA3937_RS20030 0.20 -0.2
4,558,146 - DDA3937_RS20030 0.20 +0.1
4,558,326 + DDA3937_RS20030 0.37 -0.4
4,558,326 + DDA3937_RS20030 0.37 +0.3
4,558,326 + DDA3937_RS20030 0.37 +0.4
4,558,326 + DDA3937_RS20030 0.37 +0.6
4,558,326 + DDA3937_RS20030 0.37 +0.2
4,558,326 + DDA3937_RS20030 0.37 -1.3
4,558,326 + DDA3937_RS20030 0.37 -0.6
4,558,327 - DDA3937_RS20030 0.37 -1.1
4,558,327 - DDA3937_RS20030 0.37 -0.6
4,558,327 - DDA3937_RS20030 0.37 +0.5
4,558,327 - +1.9
4,558,521 + DDA3937_RS20030 0.55 -0.7
4,558,563 + DDA3937_RS20030 0.59 -2.1
4,558,623 - DDA3937_RS20030 0.64 -0.2
4,558,666 - DDA3937_RS20030 0.68 -0.4
4,558,666 - DDA3937_RS20030 0.68 +2.2
4,558,936 + +0.2
4,558,936 + -1.5
4,558,937 - -0.2
4,558,937 - -0.2
4,558,937 - -0.1
4,558,942 + +0.2
4,559,024 + +4.1
4,559,024 + -0.9
4,559,024 + -2.4
4,559,025 - -1.1
4,559,025 - +0.6
4,559,058 - +3.2
4,559,058 - +0.1
4,559,066 + +0.8
4,559,066 + -0.5
4,559,066 + -1.7
4,559,066 + +0.2
4,559,066 + -0.4
4,559,066 + +1.1
4,559,067 - +0.6
4,559,067 - +1.8
4,559,067 - -1.4
4,559,067 - +0.9
4,559,067 - +0.3
4,559,067 - +1.1
4,559,067 - +0.2
4,559,067 - +1.9
4,559,067 - +0.2
4,559,078 + +0.9
4,559,078 + -1.0
4,559,078 + +0.8
4,559,171 + DDA3937_RS20035 0.13 +0.5
4,559,205 - DDA3937_RS20035 0.16 -1.0
4,559,224 + DDA3937_RS20035 0.17 +1.9
4,559,233 + DDA3937_RS20035 0.18 +0.9
4,559,234 - DDA3937_RS20035 0.18 +1.6
4,559,328 + DDA3937_RS20035 0.26 -0.5
4,559,328 + DDA3937_RS20035 0.26 +0.1
4,559,329 - DDA3937_RS20035 0.26 +1.4
4,559,329 - DDA3937_RS20035 0.26 -0.6
4,559,332 + DDA3937_RS20035 0.26 +0.9
4,559,332 + DDA3937_RS20035 0.26 +0.7
4,559,333 - DDA3937_RS20035 0.26 +0.0
4,559,333 - DDA3937_RS20035 0.26 +1.9
4,559,333 - DDA3937_RS20035 0.26 -1.1
4,559,333 - DDA3937_RS20035 0.26 +1.5
4,559,404 - DDA3937_RS20035 0.32 +1.6
4,559,435 + DDA3937_RS20035 0.34 +1.1
4,559,436 - DDA3937_RS20035 0.34 -0.7
4,559,436 - DDA3937_RS20035 0.34 -0.4
4,559,522 + DDA3937_RS20035 0.41 +0.5
4,559,522 + DDA3937_RS20035 0.41 +0.6
4,559,523 - DDA3937_RS20035 0.41 +1.3
4,559,555 + DDA3937_RS20035 0.44 +0.1
4,559,555 + DDA3937_RS20035 0.44 +1.6
4,559,598 + DDA3937_RS20035 0.47 +0.4
4,559,599 - DDA3937_RS20035 0.47 +0.7
4,559,684 - DDA3937_RS20035 0.54 +0.8
4,559,742 + DDA3937_RS20035 0.59 +2.1
4,559,744 + DDA3937_RS20035 0.59 -1.3
4,559,744 + DDA3937_RS20035 0.59 +0.1
4,559,744 + DDA3937_RS20035 0.59 +0.6
4,559,744 + DDA3937_RS20035 0.59 +1.2
4,559,745 - DDA3937_RS20035 0.59 +2.2
4,559,745 - DDA3937_RS20035 0.59 +0.5
4,559,745 - DDA3937_RS20035 0.59 +1.3
4,559,745 - DDA3937_RS20035 0.59 +0.5
4,559,772 - DDA3937_RS20035 0.61 +0.4
4,559,772 - DDA3937_RS20035 0.61 +0.6
4,560,061 + DDA3937_RS20035 0.84 +0.0
4,560,131 + DDA3937_RS20035 0.90 +2.9
4,560,131 + DDA3937_RS20035 0.90 +1.2
4,560,131 + DDA3937_RS20035 0.90 +0.8
4,560,132 - DDA3937_RS20035 0.90 +0.9
4,560,132 - DDA3937_RS20035 0.90 +0.2
4,560,293 + -0.7
4,560,320 - +0.5
4,560,320 - -0.3
4,560,320 - +0.4
4,560,320 - -1.3
4,560,363 - -0.2
4,560,425 + DDA3937_RS20040 0.15 -1.0
4,560,425 + DDA3937_RS20040 0.15 -2.8
4,560,425 + DDA3937_RS20040 0.15 -1.7
4,560,425 + DDA3937_RS20040 0.15 -2.6
4,560,426 - DDA3937_RS20040 0.15 +0.2
4,560,426 - DDA3937_RS20040 0.15 +0.5
4,560,426 - +2.3
4,560,426 - DDA3937_RS20040 0.15 -0.3
4,560,426 - DDA3937_RS20040 0.15 +0.1
4,560,426 - DDA3937_RS20040 0.15 -0.1
4,560,428 - DDA3937_RS20040 0.15 +0.3
4,560,461 + DDA3937_RS20040 0.18 -1.3
4,560,598 + DDA3937_RS20040 0.30 +1.5
4,560,598 + DDA3937_RS20040 0.30 +0.4
4,560,598 + DDA3937_RS20040 0.30 -0.3
4,560,598 + DDA3937_RS20040 0.30 -0.3
4,560,599 - DDA3937_RS20040 0.30 +0.6
4,560,599 - DDA3937_RS20040 0.30 +0.1
4,560,599 - DDA3937_RS20040 0.30 +0.5
4,560,665 - DDA3937_RS20040 0.36 +0.3
4,560,665 - DDA3937_RS20040 0.36 -0.3
4,560,665 - DDA3937_RS20040 0.36 -0.4
4,560,692 - DDA3937_RS20040 0.38 -1.5
4,560,716 + DDA3937_RS20040 0.40 +0.7
4,560,716 + DDA3937_RS20040 0.40 +0.9
4,560,716 + DDA3937_RS20040 0.40 -1.2
4,560,717 - DDA3937_RS20040 0.41 -0.3
4,560,717 - DDA3937_RS20040 0.41 -1.4
4,560,717 - DDA3937_RS20040 0.41 +1.2
4,560,718 + DDA3937_RS20040 0.41 +1.2
4,560,718 + DDA3937_RS20040 0.41 -0.7
4,560,718 + DDA3937_RS20040 0.41 -0.5
4,560,718 + DDA3937_RS20040 0.41 -0.2
4,560,718 + DDA3937_RS20040 0.41 -0.7
4,560,719 - DDA3937_RS20040 0.41 -0.1
4,560,719 - DDA3937_RS20040 0.41 -0.2
4,560,719 - DDA3937_RS20040 0.41 +0.1
4,560,719 - DDA3937_RS20040 0.41 +1.8
4,560,719 - DDA3937_RS20040 0.41 -0.5
4,560,719 - DDA3937_RS20040 0.41 +1.5
4,560,719 - DDA3937_RS20040 0.41 -0.4
4,560,719 - DDA3937_RS20040 0.41 +0.5
4,560,719 - DDA3937_RS20040 0.41 -3.6
4,560,719 - DDA3937_RS20040 0.41 +0.2
4,560,722 + DDA3937_RS20040 0.41 +0.8
4,560,723 - DDA3937_RS20040 0.41 +0.6
4,560,841 + DDA3937_RS20040 0.52 +0.1
4,560,841 + DDA3937_RS20040 0.52 +0.6
4,560,841 + DDA3937_RS20040 0.52 +0.2
4,560,908 - DDA3937_RS20040 0.57 -0.9
4,561,006 + DDA3937_RS20040 0.66 +0.2
4,561,007 - DDA3937_RS20040 0.66 +1.2
4,561,007 - DDA3937_RS20040 0.66 -0.5
4,561,153 + DDA3937_RS20040 0.79 -0.5
4,561,153 + DDA3937_RS20040 0.79 -0.9
4,561,154 - DDA3937_RS20040 0.79 +1.8
4,561,154 - DDA3937_RS20040 0.79 -0.7
4,561,154 - DDA3937_RS20040 0.79 +1.4
4,561,242 + DDA3937_RS20040 0.87 -0.4
4,561,242 + DDA3937_RS20040 0.87 -0.7
4,561,242 + DDA3937_RS20040 0.87 -0.3
4,561,243 - DDA3937_RS20040 0.87 -0.1
4,561,243 - DDA3937_RS20040 0.87 -1.3

Or see this region's nucleotide sequence