Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19660 and DDA3937_RS19665 are separated by 12 nucleotides DDA3937_RS19665 and DDA3937_RS19670 are separated by 44 nucleotides DDA3937_RS19670 and DDA3937_RS19675 are separated by 157 nucleotides
DDA3937_RS19660: DDA3937_RS19660 - 4-alpha-glucanotransferase, at 4,472,737 to 4,474,923
_RS19660
DDA3937_RS19665: DDA3937_RS19665 - maltodextrin phosphorylase, at 4,474,936 to 4,477,353
_RS19665
DDA3937_RS19670: DDA3937_RS19670 - DeoR/GlpR family transcriptional regulator, at 4,477,398 to 4,478,156
_RS19670
DDA3937_RS19675: DDA3937_RS19675 - rhomboid family intramembrane serine protease GlpG, at 4,478,314 to 4,479,138
_RS19675
Position (kb) 4474
4475
4476
4477
4478 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 4473.962 kb on + strand, within DDA3937_RS19660 at 4474.034 kb on + strand, within DDA3937_RS19660 at 4474.035 kb on - strand at 4474.035 kb on - strand, within DDA3937_RS19660 at 4474.035 kb on - strand, within DDA3937_RS19660 at 4474.035 kb on - strand, within DDA3937_RS19660 at 4474.293 kb on + strand, within DDA3937_RS19660 at 4474.295 kb on + strand, within DDA3937_RS19660 at 4474.295 kb on + strand, within DDA3937_RS19660 at 4474.295 kb on + strand, within DDA3937_RS19660 at 4474.295 kb on + strand, within DDA3937_RS19660 at 4474.295 kb on + strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.296 kb on - strand, within DDA3937_RS19660 at 4474.299 kb on + strand, within DDA3937_RS19660 at 4474.299 kb on + strand, within DDA3937_RS19660 at 4474.300 kb on - strand, within DDA3937_RS19660 at 4474.300 kb on - strand, within DDA3937_RS19660 at 4474.300 kb on - strand, within DDA3937_RS19660 at 4474.303 kb on - strand, within DDA3937_RS19660 at 4474.303 kb on - strand at 4474.381 kb on - strand, within DDA3937_RS19660 at 4474.480 kb on - strand, within DDA3937_RS19660 at 4474.481 kb on + strand, within DDA3937_RS19660 at 4474.481 kb on + strand, within DDA3937_RS19660 at 4474.481 kb on + strand, within DDA3937_RS19660 at 4474.481 kb on + strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.482 kb on - strand, within DDA3937_RS19660 at 4474.538 kb on + strand, within DDA3937_RS19660 at 4474.539 kb on - strand, within DDA3937_RS19660 at 4474.598 kb on - strand, within DDA3937_RS19660 at 4474.689 kb on - strand, within DDA3937_RS19660 at 4474.707 kb on - strand at 4474.734 kb on + strand at 4474.734 kb on + strand at 4474.735 kb on - strand at 4474.838 kb on - strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.868 kb on + strand at 4474.869 kb on - strand at 4474.869 kb on - strand at 4474.869 kb on - strand at 4474.869 kb on - strand at 4474.872 kb on + strand at 4474.872 kb on + strand at 4474.872 kb on + strand at 4474.872 kb on + strand at 4474.873 kb on - strand at 4474.873 kb on - strand at 4474.873 kb on - strand at 4474.873 kb on - strand at 4474.873 kb on - strand at 4474.873 kb on - strand at 4474.926 kb on + strand at 4474.926 kb on + strand at 4474.968 kb on - strand at 4475.005 kb on - strand at 4475.055 kb on - strand at 4475.087 kb on + strand at 4475.131 kb on + strand at 4475.131 kb on + strand at 4475.132 kb on - strand at 4475.167 kb on - strand at 4475.215 kb on + strand, within DDA3937_RS19665 at 4475.237 kb on + strand, within DDA3937_RS19665 at 4475.250 kb on + strand at 4475.251 kb on - strand, within DDA3937_RS19665 at 4475.444 kb on - strand, within DDA3937_RS19665 at 4475.567 kb on + strand, within DDA3937_RS19665 at 4475.567 kb on + strand, within DDA3937_RS19665 at 4475.567 kb on + strand, within DDA3937_RS19665 at 4475.567 kb on + strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.568 kb on - strand, within DDA3937_RS19665 at 4475.571 kb on + strand, within DDA3937_RS19665 at 4475.571 kb on + strand, within DDA3937_RS19665 at 4475.571 kb on + strand, within DDA3937_RS19665 at 4475.572 kb on - strand, within DDA3937_RS19665 at 4475.669 kb on + strand, within DDA3937_RS19665 at 4475.669 kb on + strand, within DDA3937_RS19665 at 4475.669 kb on + strand, within DDA3937_RS19665 at 4475.669 kb on + strand, within DDA3937_RS19665 at 4475.669 kb on + strand, within DDA3937_RS19665 at 4475.670 kb on - strand, within DDA3937_RS19665 at 4475.670 kb on - strand, within DDA3937_RS19665 at 4475.670 kb on - strand, within DDA3937_RS19665 at 4475.711 kb on + strand, within DDA3937_RS19665 at 4475.712 kb on - strand, within DDA3937_RS19665 at 4475.712 kb on - strand, within DDA3937_RS19665 at 4475.752 kb on - strand, within DDA3937_RS19665 at 4476.017 kb on + strand, within DDA3937_RS19665 at 4476.018 kb on - strand, within DDA3937_RS19665 at 4476.288 kb on + strand, within DDA3937_RS19665 at 4476.289 kb on - strand, within DDA3937_RS19665 at 4476.289 kb on - strand, within DDA3937_RS19665 at 4476.300 kb on - strand, within DDA3937_RS19665 at 4476.300 kb on - strand, within DDA3937_RS19665 at 4476.426 kb on - strand, within DDA3937_RS19665 at 4476.506 kb on + strand, within DDA3937_RS19665 at 4476.541 kb on - strand, within DDA3937_RS19665 at 4476.541 kb on - strand, within DDA3937_RS19665 at 4476.611 kb on + strand, within DDA3937_RS19665 at 4476.612 kb on - strand, within DDA3937_RS19665 at 4476.612 kb on - strand, within DDA3937_RS19665 at 4476.839 kb on + strand, within DDA3937_RS19665 at 4476.840 kb on - strand, within DDA3937_RS19665 at 4476.840 kb on - strand, within DDA3937_RS19665 at 4476.912 kb on - strand, within DDA3937_RS19665 at 4476.918 kb on - strand, within DDA3937_RS19665 at 4477.085 kb on + strand, within DDA3937_RS19665 at 4477.085 kb on + strand, within DDA3937_RS19665 at 4477.085 kb on + strand, within DDA3937_RS19665 at 4477.148 kb on + strand at 4477.148 kb on + strand at 4477.149 kb on - strand at 4477.149 kb on - strand at 4477.149 kb on - strand at 4477.149 kb on - strand at 4477.149 kb on - strand at 4477.416 kb on + strand at 4477.416 kb on + strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.417 kb on - strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.421 kb on + strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.422 kb on - strand at 4477.459 kb on - strand at 4477.512 kb on - strand, within DDA3937_RS19670 at 4477.591 kb on - strand, within DDA3937_RS19670 at 4477.634 kb on + strand, within DDA3937_RS19670 at 4477.869 kb on - strand, within DDA3937_RS19670 at 4478.015 kb on + strand at 4478.015 kb on + strand, within DDA3937_RS19670 at 4478.015 kb on + strand, within DDA3937_RS19670 at 4478.015 kb on + strand, within DDA3937_RS19670 at 4478.016 kb on - strand, within DDA3937_RS19670 at 4478.016 kb on - strand, within DDA3937_RS19670 at 4478.257 kb on + strand at 4478.304 kb on + strand at 4478.304 kb on + strand at 4478.304 kb on + strand at 4478.335 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,473,962 + DDA3937_RS19660 0.56 +1.4 4,474,034 + DDA3937_RS19660 0.59 +1.0 4,474,035 - -0.1 4,474,035 - DDA3937_RS19660 0.59 +0.9 4,474,035 - DDA3937_RS19660 0.59 +2.9 4,474,035 - DDA3937_RS19660 0.59 +1.2 4,474,293 + DDA3937_RS19660 0.71 +2.7 4,474,295 + DDA3937_RS19660 0.71 +2.1 4,474,295 + DDA3937_RS19660 0.71 +1.8 4,474,295 + DDA3937_RS19660 0.71 +1.8 4,474,295 + DDA3937_RS19660 0.71 +2.0 4,474,295 + DDA3937_RS19660 0.71 +1.9 4,474,296 - DDA3937_RS19660 0.71 +0.8 4,474,296 - DDA3937_RS19660 0.71 +4.5 4,474,296 - DDA3937_RS19660 0.71 +1.3 4,474,296 - DDA3937_RS19660 0.71 +2.3 4,474,296 - DDA3937_RS19660 0.71 +1.1 4,474,296 - DDA3937_RS19660 0.71 +1.0 4,474,296 - DDA3937_RS19660 0.71 +2.7 4,474,296 - DDA3937_RS19660 0.71 -2.6 4,474,299 + DDA3937_RS19660 0.71 +1.7 4,474,299 + DDA3937_RS19660 0.71 +2.6 4,474,300 - DDA3937_RS19660 0.71 +2.1 4,474,300 - DDA3937_RS19660 0.71 +1.6 4,474,300 - DDA3937_RS19660 0.71 +2.1 4,474,303 - DDA3937_RS19660 0.72 +2.2 4,474,303 - +1.9 4,474,381 - DDA3937_RS19660 0.75 +2.5 4,474,480 - DDA3937_RS19660 0.80 +2.2 4,474,481 + DDA3937_RS19660 0.80 +0.6 4,474,481 + DDA3937_RS19660 0.80 +1.3 4,474,481 + DDA3937_RS19660 0.80 +1.0 4,474,481 + DDA3937_RS19660 0.80 -0.1 4,474,482 - DDA3937_RS19660 0.80 +1.8 4,474,482 - DDA3937_RS19660 0.80 +0.1 4,474,482 - DDA3937_RS19660 0.80 +2.4 4,474,482 - DDA3937_RS19660 0.80 -0.7 4,474,482 - DDA3937_RS19660 0.80 +3.8 4,474,482 - DDA3937_RS19660 0.80 +1.1 4,474,538 + DDA3937_RS19660 0.82 +2.8 4,474,539 - DDA3937_RS19660 0.82 +2.5 4,474,598 - DDA3937_RS19660 0.85 +2.6 4,474,689 - DDA3937_RS19660 0.89 +1.0 4,474,707 - +2.4 4,474,734 + +2.7 4,474,734 + +3.0 4,474,735 - +1.2 4,474,838 - +1.7 4,474,868 + +2.5 4,474,868 + +1.3 4,474,868 + +1.6 4,474,868 + -0.3 4,474,868 + +0.1 4,474,868 + +1.5 4,474,868 + +2.5 4,474,868 + +1.8 4,474,868 + +0.9 4,474,868 + +0.3 4,474,868 + +1.0 4,474,869 - +2.7 4,474,869 - +1.6 4,474,869 - -0.7 4,474,869 - +2.1 4,474,872 + +1.1 4,474,872 + -0.3 4,474,872 + +2.2 4,474,872 + +1.5 4,474,873 - +0.6 4,474,873 - +2.4 4,474,873 - +3.0 4,474,873 - +1.6 4,474,873 - +0.9 4,474,873 - +2.8 4,474,926 + +2.7 4,474,926 + -0.7 4,474,968 - -0.1 4,475,005 - -1.4 4,475,055 - -1.4 4,475,087 + +1.9 4,475,131 + -0.7 4,475,131 + +1.1 4,475,132 - -0.2 4,475,167 - -0.6 4,475,215 + DDA3937_RS19665 0.12 +3.6 4,475,237 + DDA3937_RS19665 0.12 -0.3 4,475,250 + +2.1 4,475,251 - DDA3937_RS19665 0.13 -0.4 4,475,444 - DDA3937_RS19665 0.21 -1.8 4,475,567 + DDA3937_RS19665 0.26 +2.8 4,475,567 + DDA3937_RS19665 0.26 +2.0 4,475,567 + DDA3937_RS19665 0.26 +1.7 4,475,567 + DDA3937_RS19665 0.26 +1.6 4,475,568 - DDA3937_RS19665 0.26 -0.2 4,475,568 - DDA3937_RS19665 0.26 -0.5 4,475,568 - DDA3937_RS19665 0.26 +0.9 4,475,568 - DDA3937_RS19665 0.26 +0.6 4,475,568 - DDA3937_RS19665 0.26 -2.0 4,475,568 - DDA3937_RS19665 0.26 -2.3 4,475,571 + DDA3937_RS19665 0.26 +1.2 4,475,571 + DDA3937_RS19665 0.26 -1.1 4,475,571 + DDA3937_RS19665 0.26 +0.5 4,475,572 - DDA3937_RS19665 0.26 +0.3 4,475,669 + DDA3937_RS19665 0.30 +1.7 4,475,669 + DDA3937_RS19665 0.30 +2.1 4,475,669 + DDA3937_RS19665 0.30 +2.5 4,475,669 + DDA3937_RS19665 0.30 +1.1 4,475,669 + DDA3937_RS19665 0.30 -0.1 4,475,670 - DDA3937_RS19665 0.30 +0.8 4,475,670 - DDA3937_RS19665 0.30 -2.4 4,475,670 - DDA3937_RS19665 0.30 -0.4 4,475,711 + DDA3937_RS19665 0.32 +2.5 4,475,712 - DDA3937_RS19665 0.32 +1.6 4,475,712 - DDA3937_RS19665 0.32 -0.7 4,475,752 - DDA3937_RS19665 0.34 -1.0 4,476,017 + DDA3937_RS19665 0.45 +2.2 4,476,018 - DDA3937_RS19665 0.45 +0.6 4,476,288 + DDA3937_RS19665 0.56 +2.3 4,476,289 - DDA3937_RS19665 0.56 -0.2 4,476,289 - DDA3937_RS19665 0.56 -0.3 4,476,300 - DDA3937_RS19665 0.56 +1.5 4,476,300 - DDA3937_RS19665 0.56 -0.5 4,476,426 - DDA3937_RS19665 0.62 +0.2 4,476,506 + DDA3937_RS19665 0.65 +1.6 4,476,541 - DDA3937_RS19665 0.66 +0.1 4,476,541 - DDA3937_RS19665 0.66 +1.3 4,476,611 + DDA3937_RS19665 0.69 +2.9 4,476,612 - DDA3937_RS19665 0.69 +0.2 4,476,612 - DDA3937_RS19665 0.69 +1.1 4,476,839 + DDA3937_RS19665 0.79 +2.2 4,476,840 - DDA3937_RS19665 0.79 +3.5 4,476,840 - DDA3937_RS19665 0.79 +4.0 4,476,912 - DDA3937_RS19665 0.82 +0.9 4,476,918 - DDA3937_RS19665 0.82 +0.1 4,477,085 + DDA3937_RS19665 0.89 +1.7 4,477,085 + DDA3937_RS19665 0.89 +4.2 4,477,085 + DDA3937_RS19665 0.89 +2.8 4,477,148 + +0.1 4,477,148 + +2.1 4,477,149 - +1.8 4,477,149 - -0.6 4,477,149 - +0.9 4,477,149 - +1.3 4,477,149 - +0.3 4,477,416 + +6.1 4,477,416 + +1.1 4,477,417 - +1.2 4,477,417 - +2.0 4,477,417 - +0.8 4,477,417 - +0.5 4,477,417 - +0.6 4,477,417 - +1.7 4,477,417 - +0.1 4,477,417 - -2.4 4,477,417 - +2.6 4,477,421 + +2.5 4,477,421 + -3.9 4,477,421 + -0.1 4,477,421 + +1.2 4,477,421 + +0.7 4,477,421 + +1.6 4,477,421 + +0.9 4,477,421 + +1.4 4,477,421 + +4.7 4,477,421 + +3.8 4,477,421 + +2.9 4,477,422 - -0.3 4,477,422 - +0.6 4,477,422 - -0.2 4,477,422 - -1.1 4,477,422 - +0.2 4,477,422 - -0.7 4,477,459 - -0.9 4,477,512 - DDA3937_RS19670 0.15 +0.1 4,477,591 - DDA3937_RS19670 0.25 +0.0 4,477,634 + DDA3937_RS19670 0.31 +1.7 4,477,869 - DDA3937_RS19670 0.62 +1.9 4,478,015 + +0.9 4,478,015 + DDA3937_RS19670 0.81 +0.7 4,478,015 + DDA3937_RS19670 0.81 -1.1 4,478,015 + DDA3937_RS19670 0.81 -1.4 4,478,016 - DDA3937_RS19670 0.81 +0.3 4,478,016 - DDA3937_RS19670 0.81 -0.6 4,478,257 + -1.4 4,478,304 + +0.0 4,478,304 + +0.3 4,478,304 + -0.3 4,478,335 - -1.1
Or see this region's nucleotide sequence