Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19360

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,402,140	+		DDA3937_RS19355	0.27	-1.4
4,402,158	-		DDA3937_RS19355	0.28	+0.8
4,402,251	+		DDA3937_RS19355	0.37	-0.2
4,402,252	-		DDA3937_RS19355	0.37	-0.6
4,402,340	+		DDA3937_RS19355	0.45	+0.7
4,402,340	+		DDA3937_RS19355	0.45	-0.2
4,402,371	+				+0.8
4,402,413	+		DDA3937_RS19355	0.51	-0.7
4,402,414	-		DDA3937_RS19355	0.51	+0.3
4,402,474	+		DDA3937_RS19355	0.56	-0.5
4,402,474	+		DDA3937_RS19355	0.56	+0.1
4,402,475	-		DDA3937_RS19355	0.56	-0.4
4,402,544	+		DDA3937_RS19355	0.63	-0.5
4,402,544	+		DDA3937_RS19355	0.63	+0.3
4,402,544	+		DDA3937_RS19355	0.63	+1.2
4,402,544	+		DDA3937_RS19355	0.63	-0.7
4,402,544	+		DDA3937_RS19355	0.63	-1.9
4,402,544	+		DDA3937_RS19355	0.63	-0.9
4,402,544	+		DDA3937_RS19355	0.63	-0.7
4,402,544	+		DDA3937_RS19355	0.63	+0.2
4,402,544	+		DDA3937_RS19355	0.63	-0.1
4,402,544	+		DDA3937_RS19355	0.63	-1.2
4,402,544	+		DDA3937_RS19355	0.63	-1.5
4,402,545	-		DDA3937_RS19355	0.63	-0.0
4,402,545	-		DDA3937_RS19355	0.63	-2.7
4,402,545	-		DDA3937_RS19355	0.63	-1.5
4,402,545	-		DDA3937_RS19355	0.63	-0.3
4,402,545	-		DDA3937_RS19355	0.63	-1.4
4,402,545	-		DDA3937_RS19355	0.63	-0.4
4,402,545	-		DDA3937_RS19355	0.63	-1.5
4,402,545	-		DDA3937_RS19355	0.63	-0.1
4,402,545	-		DDA3937_RS19355	0.63	-0.5
4,402,545	-		DDA3937_RS19355	0.63	+0.3
4,402,545	-		DDA3937_RS19355	0.63	-0.2
4,402,610	+		DDA3937_RS19355	0.68	+0.2
4,402,610	+		DDA3937_RS19355	0.68	-2.2
4,402,610	+		DDA3937_RS19355	0.68	-0.2
4,402,610	+		DDA3937_RS19355	0.68	-0.7
4,402,610	+		DDA3937_RS19355	0.68	+1.6
4,402,610	+		DDA3937_RS19355	0.68	+0.5
4,402,610	+		DDA3937_RS19355	0.68	+0.1
4,402,613	+		DDA3937_RS19355	0.69	+0.1
4,402,614	-		DDA3937_RS19355	0.69	+0.5
4,402,614	-		DDA3937_RS19355	0.69	-0.6
4,402,614	-		DDA3937_RS19355	0.69	+1.3
4,402,614	-		DDA3937_RS19355	0.69	-1.0
4,402,674	+		DDA3937_RS19355	0.74	-2.4
4,402,674	+		DDA3937_RS19355	0.74	-0.9
4,402,674	+		DDA3937_RS19355	0.74	+0.3
4,402,675	-		DDA3937_RS19355	0.74	-1.5
4,402,784	+		DDA3937_RS19355	0.84	+0.8
4,402,784	+		DDA3937_RS19355	0.84	-1.3
4,402,785	-		DDA3937_RS19355	0.84	-1.2
4,402,785	-		DDA3937_RS19355	0.84	-0.4
4,402,785	-		DDA3937_RS19355	0.84	+0.3
4,402,929	+				-0.0
4,402,929	+				+0.3
4,402,929	+				-0.5
4,402,930	-				-0.9
4,402,930	-				+0.9
4,402,945	+				+0.3
4,402,987	-				-0.2
4,402,987	-				+0.3
4,403,001	+				-0.1
4,403,001	+				-1.2
4,403,001	+				-0.0
4,403,002	-				-0.2
4,403,002	-				+0.2
4,403,008	+				-0.6
4,403,008	+				-1.5
4,403,008	+				-0.5
4,403,008	+				-0.6
4,403,008	+				+0.1
4,403,008	+				-0.2
4,403,008	+				-2.7
4,403,009	-				+0.0
4,403,009	-				-1.2
4,403,009	-				-0.1
4,403,009	-				-0.7
4,403,009	-				-1.0
4,403,009	-				+0.4
4,403,009	-				-0.3
4,403,009	-				-0.5
4,403,009	-				-2.1
4,403,009	-				-2.3
4,403,009	-				-0.4
4,403,009	-				-0.5
4,403,010	+				+0.8
4,403,011	-				+0.4
4,403,011	-				+2.0
4,403,011	-				-0.4
4,403,011	-				-0.4
4,403,011	-				+0.4
4,403,024	+				-0.8
4,403,024	+				-0.8
4,403,024	+				-0.0
4,403,024	+				-1.3
4,403,024	+				-0.4
4,403,025	-				-0.3
4,403,025	-				-0.1
4,403,349	+		DDA3937_RS19360	0.27	+2.4
4,403,350	-		DDA3937_RS19360	0.27	-0.2
4,403,389	+		DDA3937_RS19360	0.32	+0.5
4,403,389	+		DDA3937_RS19360	0.32	+1.2
4,403,390	-		DDA3937_RS19360	0.32	+1.4
4,403,390	-		DDA3937_RS19360	0.32	+1.2
4,403,390	-		DDA3937_RS19360	0.32	+2.0
4,403,390	-		DDA3937_RS19360	0.32	-0.5
4,403,390	-		DDA3937_RS19360	0.32	-0.5
4,403,396	+		DDA3937_RS19360	0.33	+1.1
4,403,423	+		DDA3937_RS19360	0.36	-0.2
4,403,424	-		DDA3937_RS19360	0.36	+0.8
4,403,424	-		DDA3937_RS19360	0.36	+1.1
4,403,431	+		DDA3937_RS19360	0.37	+1.4
4,403,431	+		DDA3937_RS19360	0.37	+2.2
4,403,431	+		DDA3937_RS19360	0.37	+2.2
4,403,431	+		DDA3937_RS19360	0.37	+0.8
4,403,431	+		DDA3937_RS19360	0.37	-0.2
4,403,431	+		DDA3937_RS19360	0.37	+0.8
4,403,432	-		DDA3937_RS19360	0.37	+1.8
4,403,432	-		DDA3937_RS19360	0.37	+0.9
4,403,432	-		DDA3937_RS19360	0.37	-1.3
4,403,432	-		DDA3937_RS19360	0.37	+1.2
4,403,432	-		DDA3937_RS19360	0.37	+0.1
4,403,487	+		DDA3937_RS19360	0.43	-0.2
4,403,487	+		DDA3937_RS19360	0.43	+0.7
4,403,494	+		DDA3937_RS19360	0.44	-0.5
4,403,494	+		DDA3937_RS19360	0.44	+0.8
4,403,495	-		DDA3937_RS19360	0.44	+0.5
4,403,495	-		DDA3937_RS19360	0.44	+1.5
4,403,767	+		DDA3937_RS19360	0.76	+2.2
4,404,010	+				+0.6
4,404,010	+				+1.2
4,404,010	+				+1.3
4,404,011	-				+0.2
4,404,025	+				+0.8
4,404,026	-				-1.2
4,404,028	+				+0.4
4,404,028	+				-1.5
4,404,028	+				+0.8
4,404,028	+				-0.5
4,404,028	+				+2.7
4,404,028	+				+1.3
4,404,029	-				+0.3
4,404,029	-				+1.5
4,404,029	-				-1.9
4,404,029	-				+0.5
4,404,029	-				-1.2
4,404,029	-				+0.4
4,404,029	-				+1.4
4,404,029	-				-0.7
4,404,029	-				+1.4
4,404,029	-				+0.1
4,404,029	-				-0.3
4,404,030	+				+0.7
4,404,030	+				+1.0
4,404,030	+				+0.3
4,404,030	+				+0.6
4,404,030	+				-0.7
4,404,030	+				+0.4
4,404,030	+				+0.4
4,404,031	-				-0.6
4,404,031	-				+0.3
4,404,031	-				-0.5
4,404,051	+				+2.8
4,404,051	+				+0.3
4,404,051	+				-0.5
4,404,052	-				-0.8
4,404,052	-				+0.1
4,404,052	-				-1.0
4,404,052	-				+0.9
4,404,052	-				-0.2
4,404,052	-				-2.7
4,404,052	-				-1.2
4,404,052	-				+0.9
4,404,114	+				-1.0
4,404,115	-				-0.3
4,404,115	-				-4.2
4,404,122	+				+0.8
4,404,122	+				+0.6
4,404,122	+				+0.8
4,404,122	+				+0.1
4,404,125	+				+0.5
4,404,125	+				+0.0
4,404,126	-				-1.5
4,404,217	+		DDA3937_RS19365	0.16	+1.1
4,404,396	+				-0.5
4,404,399	+				+0.8
4,404,399	+				+1.4
4,404,400	-				-1.0
4,404,400	-				-0.7
4,404,412	+				+1.3
4,404,469	+				+1.2
4,404,470	-				-0.2
4,404,544	+				+0.0
4,404,545	-				-0.9
4,404,596	-		DDA3937_RS19370	0.12	+0.8
4,404,596	-		DDA3937_RS19370	0.12	+0.1
4,404,596	-		DDA3937_RS19370	0.12	-0.2
4,404,596	-		DDA3937_RS19370	0.12	-0.4
4,404,687	+		DDA3937_RS19370	0.21	+0.4
4,404,738	+				-0.2