Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18605 and DDA3937_RS18610 are separated by 89 nucleotides DDA3937_RS18610 and DDA3937_RS18615 are separated by 144 nucleotides DDA3937_RS18615 and DDA3937_RS18620 overlap by 8 nucleotides
DDA3937_RS18605: DDA3937_RS18605 - GTPase HflX, at 4,252,429 to 4,253,709
_RS18605
DDA3937_RS18610: DDA3937_RS18610 - RNA chaperone Hfq, at 4,253,799 to 4,254,098
_RS18610
DDA3937_RS18615: DDA3937_RS18615 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 4,254,243 to 4,255,184
_RS18615
DDA3937_RS18620: DDA3937_RS18620 - DNA mismatch repair endonuclease MutL, at 4,255,177 to 4,257,117
_RS18620
Position (kb) 4254
4255
4256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 4253.544 kb on - strand, within DDA3937_RS18605 at 4253.544 kb on - strand, within DDA3937_RS18605 at 4253.544 kb on - strand, within DDA3937_RS18605 at 4253.593 kb on + strand at 4253.641 kb on - strand at 4253.661 kb on - strand at 4253.665 kb on - strand at 4253.665 kb on - strand at 4253.671 kb on + strand at 4253.671 kb on + strand at 4253.671 kb on + strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.672 kb on - strand at 4253.675 kb on - strand at 4253.675 kb on - strand at 4253.675 kb on - strand at 4253.675 kb on - strand at 4253.675 kb on - strand at 4253.675 kb on - strand at 4253.697 kb on - strand at 4253.782 kb on - strand at 4253.790 kb on - strand at 4253.860 kb on + strand at 4253.860 kb on + strand, within DDA3937_RS18610 at 4253.861 kb on - strand, within DDA3937_RS18610 at 4253.861 kb on - strand, within DDA3937_RS18610 at 4253.861 kb on - strand, within DDA3937_RS18610 at 4253.861 kb on - strand, within DDA3937_RS18610 at 4253.861 kb on - strand, within DDA3937_RS18610 at 4253.865 kb on - strand at 4253.865 kb on - strand, within DDA3937_RS18610 at 4253.883 kb on - strand, within DDA3937_RS18610 at 4253.883 kb on - strand, within DDA3937_RS18610 at 4253.883 kb on - strand, within DDA3937_RS18610 at 4253.883 kb on - strand, within DDA3937_RS18610 at 4253.883 kb on - strand, within DDA3937_RS18610 at 4253.883 kb on - strand, within DDA3937_RS18610 at 4253.885 kb on + strand, within DDA3937_RS18610 at 4253.886 kb on - strand, within DDA3937_RS18610 at 4253.886 kb on - strand, within DDA3937_RS18610 at 4253.886 kb on - strand, within DDA3937_RS18610 at 4253.886 kb on - strand, within DDA3937_RS18610 at 4253.886 kb on - strand, within DDA3937_RS18610 at 4253.886 kb on - strand, within DDA3937_RS18610 at 4253.886 kb on - strand, within DDA3937_RS18610 at 4253.886 kb on - strand, within DDA3937_RS18610 at 4253.914 kb on - strand, within DDA3937_RS18610 at 4253.914 kb on - strand, within DDA3937_RS18610 at 4253.914 kb on - strand, within DDA3937_RS18610 at 4253.918 kb on + strand at 4253.919 kb on - strand, within DDA3937_RS18610 at 4253.935 kb on + strand, within DDA3937_RS18610 at 4253.935 kb on + strand, within DDA3937_RS18610 at 4253.936 kb on - strand, within DDA3937_RS18610 at 4253.936 kb on - strand, within DDA3937_RS18610 at 4254.026 kb on - strand, within DDA3937_RS18610 at 4254.026 kb on - strand, within DDA3937_RS18610 at 4254.026 kb on - strand, within DDA3937_RS18610 at 4254.026 kb on - strand, within DDA3937_RS18610 at 4254.026 kb on - strand, within DDA3937_RS18610 at 4254.101 kb on + strand at 4254.102 kb on - strand at 4254.102 kb on - strand at 4254.104 kb on - strand at 4254.104 kb on - strand at 4254.104 kb on - strand at 4254.104 kb on - strand at 4254.124 kb on - strand at 4254.124 kb on - strand at 4254.155 kb on + strand at 4254.194 kb on + strand at 4254.222 kb on + strand at 4254.223 kb on - strand at 4254.223 kb on - strand at 4254.223 kb on - strand at 4254.228 kb on - strand at 4254.228 kb on - strand at 4254.240 kb on - strand at 4254.244 kb on + strand at 4254.244 kb on + strand at 4254.244 kb on + strand at 4254.244 kb on + strand at 4254.244 kb on + strand at 4254.244 kb on + strand at 4254.244 kb on + strand at 4254.245 kb on - strand at 4254.245 kb on - strand at 4254.245 kb on - strand at 4254.251 kb on + strand at 4254.252 kb on - strand at 4254.379 kb on + strand, within DDA3937_RS18615 at 4254.380 kb on - strand, within DDA3937_RS18615 at 4254.395 kb on - strand, within DDA3937_RS18615 at 4254.415 kb on + strand, within DDA3937_RS18615 at 4254.415 kb on + strand, within DDA3937_RS18615 at 4255.149 kb on - strand at 4255.223 kb on + strand at 4255.223 kb on + strand at 4255.223 kb on + strand at 4255.223 kb on + strand at 4255.223 kb on + strand at 4255.224 kb on - strand at 4255.224 kb on - strand at 4255.224 kb on - strand at 4255.224 kb on - strand at 4255.224 kb on - strand at 4255.224 kb on - strand at 4255.224 kb on - strand at 4255.224 kb on - strand at 4255.224 kb on - strand at 4255.225 kb on + strand at 4255.225 kb on + strand at 4255.225 kb on + strand at 4255.225 kb on + strand at 4255.225 kb on + strand at 4255.226 kb on - strand at 4255.226 kb on - strand at 4255.226 kb on - strand at 4255.226 kb on - strand at 4255.226 kb on - strand at 4255.273 kb on + strand at 4255.273 kb on + strand at 4255.274 kb on - strand at 4255.274 kb on - strand at 4255.392 kb on - strand, within DDA3937_RS18620 at 4255.392 kb on - strand, within DDA3937_RS18620 at 4255.483 kb on + strand, within DDA3937_RS18620 at 4255.483 kb on + strand, within DDA3937_RS18620 at 4255.484 kb on - strand, within DDA3937_RS18620 at 4255.489 kb on + strand, within DDA3937_RS18620 at 4255.489 kb on + strand at 4255.490 kb on - strand, within DDA3937_RS18620 at 4255.588 kb on + strand, within DDA3937_RS18620 at 4255.589 kb on - strand, within DDA3937_RS18620 at 4255.635 kb on - strand, within DDA3937_RS18620 at 4255.679 kb on + strand, within DDA3937_RS18620 at 4255.694 kb on + strand, within DDA3937_RS18620 at 4255.694 kb on + strand, within DDA3937_RS18620 at 4255.694 kb on + strand, within DDA3937_RS18620 at 4255.694 kb on + strand, within DDA3937_RS18620 at 4255.695 kb on - strand, within DDA3937_RS18620 at 4255.695 kb on - strand, within DDA3937_RS18620 at 4255.695 kb on - strand, within DDA3937_RS18620 at 4255.695 kb on - strand, within DDA3937_RS18620 at 4255.707 kb on - strand, within DDA3937_RS18620 at 4255.890 kb on - strand, within DDA3937_RS18620 at 4256.134 kb on + strand, within DDA3937_RS18620 at 4256.153 kb on + strand, within DDA3937_RS18620 at 4256.153 kb on + strand, within DDA3937_RS18620 at 4256.154 kb on - strand, within DDA3937_RS18620 at 4256.154 kb on - strand, within DDA3937_RS18620 at 4256.154 kb on - strand, within DDA3937_RS18620 at 4256.157 kb on + strand, within DDA3937_RS18620 at 4256.157 kb on + strand, within DDA3937_RS18620 at 4256.157 kb on + strand, within DDA3937_RS18620 at 4256.157 kb on + strand, within DDA3937_RS18620 at 4256.157 kb on + strand, within DDA3937_RS18620 at 4256.157 kb on + strand, within DDA3937_RS18620 at 4256.158 kb on - strand, within DDA3937_RS18620 at 4256.168 kb on - strand, within DDA3937_RS18620 at 4256.168 kb on - strand, within DDA3937_RS18620 at 4256.168 kb on - strand, within DDA3937_RS18620
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,253,544 - DDA3937_RS18605 0.87 +1.5 4,253,544 - DDA3937_RS18605 0.87 -0.5 4,253,544 - DDA3937_RS18605 0.87 +0.1 4,253,593 + +1.4 4,253,641 - +0.1 4,253,661 - +2.0 4,253,665 - +1.9 4,253,665 - +0.8 4,253,671 + +2.3 4,253,671 + -1.2 4,253,671 + -0.0 4,253,672 - +0.1 4,253,672 - +0.6 4,253,672 - +4.1 4,253,672 - +0.3 4,253,672 - +1.8 4,253,672 - +1.1 4,253,672 - +1.2 4,253,672 - +2.1 4,253,672 - +1.6 4,253,672 - -0.8 4,253,672 - -0.2 4,253,672 - +1.9 4,253,672 - -0.2 4,253,672 - +1.4 4,253,672 - +0.5 4,253,672 - +1.8 4,253,675 - +0.4 4,253,675 - +1.1 4,253,675 - +0.9 4,253,675 - +1.0 4,253,675 - +1.5 4,253,675 - +2.6 4,253,697 - -1.2 4,253,782 - +5.5 4,253,790 - +5.0 4,253,860 + -0.2 4,253,860 + DDA3937_RS18610 0.20 +0.6 4,253,861 - DDA3937_RS18610 0.21 +6.8 4,253,861 - DDA3937_RS18610 0.21 +2.9 4,253,861 - DDA3937_RS18610 0.21 +5.1 4,253,861 - DDA3937_RS18610 0.21 +7.6 4,253,861 - DDA3937_RS18610 0.21 +5.8 4,253,865 - +6.5 4,253,865 - DDA3937_RS18610 0.22 +6.2 4,253,883 - DDA3937_RS18610 0.28 +7.2 4,253,883 - DDA3937_RS18610 0.28 +5.3 4,253,883 - DDA3937_RS18610 0.28 +6.2 4,253,883 - DDA3937_RS18610 0.28 +5.0 4,253,883 - DDA3937_RS18610 0.28 +6.0 4,253,883 - DDA3937_RS18610 0.28 +5.6 4,253,885 + DDA3937_RS18610 0.29 +0.1 4,253,886 - DDA3937_RS18610 0.29 +5.1 4,253,886 - DDA3937_RS18610 0.29 +6.3 4,253,886 - DDA3937_RS18610 0.29 +6.1 4,253,886 - DDA3937_RS18610 0.29 +4.7 4,253,886 - DDA3937_RS18610 0.29 +6.0 4,253,886 - DDA3937_RS18610 0.29 +7.2 4,253,886 - DDA3937_RS18610 0.29 +6.0 4,253,886 - DDA3937_RS18610 0.29 +5.3 4,253,914 - DDA3937_RS18610 0.38 +5.4 4,253,914 - DDA3937_RS18610 0.38 +6.2 4,253,914 - DDA3937_RS18610 0.38 +5.5 4,253,918 + +1.4 4,253,919 - DDA3937_RS18610 0.40 +6.1 4,253,935 + DDA3937_RS18610 0.45 +3.5 4,253,935 + DDA3937_RS18610 0.45 +4.7 4,253,936 - DDA3937_RS18610 0.46 +6.8 4,253,936 - DDA3937_RS18610 0.46 +6.3 4,254,026 - DDA3937_RS18610 0.76 +6.8 4,254,026 - DDA3937_RS18610 0.76 +4.9 4,254,026 - DDA3937_RS18610 0.76 +5.5 4,254,026 - DDA3937_RS18610 0.76 +5.9 4,254,026 - DDA3937_RS18610 0.76 +6.5 4,254,101 + +6.0 4,254,102 - +5.7 4,254,102 - +6.4 4,254,104 - +6.1 4,254,104 - +6.0 4,254,104 - +6.0 4,254,104 - +5.8 4,254,124 - +2.9 4,254,124 - +0.3 4,254,155 + +8.1 4,254,194 + +7.2 4,254,222 + +7.4 4,254,223 - +0.1 4,254,223 - +0.6 4,254,223 - +0.4 4,254,228 - +0.1 4,254,228 - +0.4 4,254,240 - +0.7 4,254,244 + +5.5 4,254,244 + +4.3 4,254,244 + +5.2 4,254,244 + +5.2 4,254,244 + +5.4 4,254,244 + +3.8 4,254,244 + +4.2 4,254,245 - -1.5 4,254,245 - +0.3 4,254,245 - +0.2 4,254,251 + +5.1 4,254,252 - -1.9 4,254,379 + DDA3937_RS18615 0.14 +0.2 4,254,380 - DDA3937_RS18615 0.15 -1.8 4,254,395 - DDA3937_RS18615 0.16 +0.4 4,254,415 + DDA3937_RS18615 0.18 -2.0 4,254,415 + DDA3937_RS18615 0.18 +0.8 4,255,149 - -1.0 4,255,223 + +1.6 4,255,223 + +1.3 4,255,223 + +1.0 4,255,223 + -0.4 4,255,223 + +1.2 4,255,224 - -0.3 4,255,224 - -2.3 4,255,224 - -0.8 4,255,224 - +0.8 4,255,224 - -1.5 4,255,224 - -1.7 4,255,224 - -0.5 4,255,224 - -0.8 4,255,224 - -0.2 4,255,225 + -0.3 4,255,225 + +0.4 4,255,225 + +0.7 4,255,225 + -2.7 4,255,225 + +0.2 4,255,226 - -0.8 4,255,226 - -1.0 4,255,226 - -0.7 4,255,226 - +0.4 4,255,226 - -1.1 4,255,273 + +0.8 4,255,273 + +0.7 4,255,274 - -0.4 4,255,274 - -0.2 4,255,392 - DDA3937_RS18620 0.11 -1.2 4,255,392 - DDA3937_RS18620 0.11 -0.2 4,255,483 + DDA3937_RS18620 0.16 -0.2 4,255,483 + DDA3937_RS18620 0.16 -1.1 4,255,484 - DDA3937_RS18620 0.16 -3.1 4,255,489 + DDA3937_RS18620 0.16 +0.6 4,255,489 + +0.8 4,255,490 - DDA3937_RS18620 0.16 +0.2 4,255,588 + DDA3937_RS18620 0.21 -2.2 4,255,589 - DDA3937_RS18620 0.21 -1.4 4,255,635 - DDA3937_RS18620 0.24 +0.1 4,255,679 + DDA3937_RS18620 0.26 -0.6 4,255,694 + DDA3937_RS18620 0.27 -0.6 4,255,694 + DDA3937_RS18620 0.27 -1.9 4,255,694 + DDA3937_RS18620 0.27 +2.0 4,255,694 + DDA3937_RS18620 0.27 -0.5 4,255,695 - DDA3937_RS18620 0.27 +0.4 4,255,695 - DDA3937_RS18620 0.27 -1.8 4,255,695 - DDA3937_RS18620 0.27 -0.6 4,255,695 - DDA3937_RS18620 0.27 -1.8 4,255,707 - DDA3937_RS18620 0.27 -0.5 4,255,890 - DDA3937_RS18620 0.37 -0.2 4,256,134 + DDA3937_RS18620 0.49 +2.6 4,256,153 + DDA3937_RS18620 0.50 -2.4 4,256,153 + DDA3937_RS18620 0.50 +0.0 4,256,154 - DDA3937_RS18620 0.50 -1.2 4,256,154 - DDA3937_RS18620 0.50 -1.3 4,256,154 - DDA3937_RS18620 0.50 +0.9 4,256,157 + DDA3937_RS18620 0.50 +1.3 4,256,157 + DDA3937_RS18620 0.50 -0.7 4,256,157 + DDA3937_RS18620 0.50 -2.0 4,256,157 + DDA3937_RS18620 0.50 +0.2 4,256,157 + DDA3937_RS18620 0.50 -1.0 4,256,157 + DDA3937_RS18620 0.50 +1.0 4,256,158 - DDA3937_RS18620 0.51 -3.2 4,256,168 - DDA3937_RS18620 0.51 -1.5 4,256,168 - DDA3937_RS18620 0.51 -1.6 4,256,168 - DDA3937_RS18620 0.51 -0.2
Or see this region's nucleotide sequence