Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18400

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18395 and DDA3937_RS23345 are separated by 24 nucleotidesDDA3937_RS23345 and DDA3937_RS18400 are separated by 30 nucleotidesDDA3937_RS18400 and DDA3937_RS18405 are separated by 141 nucleotides DDA3937_RS18395: DDA3937_RS18395 - transaldolase, at 4,202,328 to 4,203,281 _RS18395 DDA3937_RS23345: DDA3937_RS23345 - hypothetical protein, at 4,203,306 to 4,203,554 _RS23345 DDA3937_RS18400: DDA3937_RS18400 - peroxide stress protein YaaA, at 4,203,585 to 4,204,364 _RS18400 DDA3937_RS18405: DDA3937_RS18405 - threonine synthase, at 4,204,506 to 4,205,795 _RS18405 Position (kb) 4203 4204 4205Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 4202.644 kb on + strand, within DDA3937_RS18395at 4202.644 kb on + strand, within DDA3937_RS18395at 4202.647 kb on + strand, within DDA3937_RS18395at 4202.647 kb on + strand, within DDA3937_RS18395at 4202.648 kb on - strand, within DDA3937_RS18395at 4202.648 kb on - strand, within DDA3937_RS18395at 4202.654 kb on - strand, within DDA3937_RS18395at 4202.654 kb on - strand, within DDA3937_RS18395at 4202.726 kb on - strand, within DDA3937_RS18395at 4202.726 kb on - strand, within DDA3937_RS18395at 4202.822 kb on + strand, within DDA3937_RS18395at 4202.822 kb on + strand, within DDA3937_RS18395at 4202.864 kb on + strand, within DDA3937_RS18395at 4202.927 kb on - strand, within DDA3937_RS18395at 4202.927 kb on - strand, within DDA3937_RS18395at 4202.974 kb on + strand, within DDA3937_RS18395at 4203.045 kb on - strand, within DDA3937_RS18395at 4203.045 kb on - strand, within DDA3937_RS18395at 4203.202 kb on + strandat 4203.203 kb on - strandat 4203.341 kb on + strand, within DDA3937_RS23345at 4203.341 kb on + strand, within DDA3937_RS23345at 4203.341 kb on + strand, within DDA3937_RS23345at 4203.342 kb on - strand, within DDA3937_RS23345at 4203.345 kb on - strand, within DDA3937_RS23345at 4203.345 kb on - strand, within DDA3937_RS23345at 4203.356 kb on - strand, within DDA3937_RS23345at 4203.416 kb on - strand, within DDA3937_RS23345at 4203.502 kb on + strand, within DDA3937_RS23345at 4203.552 kb on + strandat 4203.552 kb on + strandat 4203.552 kb on + strandat 4203.553 kb on - strandat 4203.553 kb on - strandat 4203.579 kb on - strandat 4203.584 kb on + strandat 4203.584 kb on + strandat 4203.585 kb on - strandat 4203.621 kb on + strandat 4203.649 kb on - strandat 4203.650 kb on + strandat 4203.650 kb on + strandat 4203.650 kb on + strandat 4203.650 kb on + strandat 4203.651 kb on - strandat 4203.651 kb on - strandat 4203.651 kb on - strandat 4203.651 kb on - strandat 4203.846 kb on + strand, within DDA3937_RS18400at 4203.846 kb on + strand, within DDA3937_RS18400at 4203.846 kb on + strand, within DDA3937_RS18400at 4203.847 kb on - strand, within DDA3937_RS18400at 4203.847 kb on - strand, within DDA3937_RS18400at 4203.911 kb on + strand, within DDA3937_RS18400at 4203.912 kb on - strand, within DDA3937_RS18400at 4203.912 kb on - strand, within DDA3937_RS18400at 4203.912 kb on - strand, within DDA3937_RS18400at 4203.927 kb on + strand, within DDA3937_RS18400at 4204.014 kb on + strand, within DDA3937_RS18400at 4204.015 kb on - strand, within DDA3937_RS18400at 4204.015 kb on - strand, within DDA3937_RS18400at 4204.015 kb on - strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.107 kb on + strand, within DDA3937_RS18400at 4204.107 kb on + strand, within DDA3937_RS18400at 4204.107 kb on + strand, within DDA3937_RS18400at 4204.108 kb on - strand, within DDA3937_RS18400at 4204.150 kb on + strand, within DDA3937_RS18400at 4204.151 kb on - strand, within DDA3937_RS18400at 4204.204 kb on - strand, within DDA3937_RS18400at 4204.296 kb on + strandat 4204.297 kb on - strandat 4204.297 kb on - strandat 4204.297 kb on - strandat 4204.299 kb on + strandat 4204.299 kb on + strandat 4204.395 kb on - strandat 4204.395 kb on - strandat 4204.436 kb on + strandat 4204.445 kb on - strandat 4204.495 kb on + strandat 4204.495 kb on + strandat 4204.508 kb on - strandat 4204.623 kb on - strandat 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.753 kb on + strand, within DDA3937_RS18405at 4204.753 kb on + strand, within DDA3937_RS18405at 4204.754 kb on - strand, within DDA3937_RS18405at 4204.781 kb on + strand, within DDA3937_RS18405at 4204.781 kb on + strand, within DDA3937_RS18405at 4204.782 kb on - strand, within DDA3937_RS18405at 4204.782 kb on - strand, within DDA3937_RS18405at 4204.782 kb on - strand, within DDA3937_RS18405at 4204.782 kb on - strand, within DDA3937_RS18405at 4204.782 kb on - strand, within DDA3937_RS18405at 4204.988 kb on + strand, within DDA3937_RS18405at 4204.989 kb on - strand, within DDA3937_RS18405at 4205.074 kb on - strand, within DDA3937_RS18405at 4205.074 kb on - strand, within DDA3937_RS18405at 4205.119 kb on + strand, within DDA3937_RS18405at 4205.119 kb on + strand, within DDA3937_RS18405at 4205.120 kb on - strand, within DDA3937_RS18405at 4205.120 kb on - strand, within DDA3937_RS18405at 4205.120 kb on - strand, within DDA3937_RS18405at 4205.122 kb on + strand, within DDA3937_RS18405at 4205.122 kb on + strand, within DDA3937_RS18405at 4205.122 kb on + strand, within DDA3937_RS18405at 4205.123 kb on - strand, within DDA3937_RS18405at 4205.123 kb on - strand, within DDA3937_RS18405at 4205.123 kb on - strand, within DDA3937_RS18405at 4205.123 kb on - strand, within DDA3937_RS18405at 4205.258 kb on + strand, within DDA3937_RS18405at 4205.282 kb on + strand, within DDA3937_RS18405at 4205.283 kb on - strand, within DDA3937_RS18405at 4205.283 kb on - strand, within DDA3937_RS18405at 4205.283 kb on - strand, within DDA3937_RS18405at 4205.360 kb on - strand, within DDA3937_RS18405

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,202,644 + DDA3937_RS18395 0.33 -1.3
4,202,644 + DDA3937_RS18395 0.33 +0.2
4,202,647 + DDA3937_RS18395 0.33 -0.9
4,202,647 + DDA3937_RS18395 0.33 -1.6
4,202,648 - DDA3937_RS18395 0.34 -0.2
4,202,648 - DDA3937_RS18395 0.34 -0.4
4,202,654 - DDA3937_RS18395 0.34 +1.8
4,202,654 - DDA3937_RS18395 0.34 -0.9
4,202,726 - DDA3937_RS18395 0.42 -0.1
4,202,726 - DDA3937_RS18395 0.42 -0.8
4,202,822 + DDA3937_RS18395 0.52 -0.8
4,202,822 + DDA3937_RS18395 0.52 -3.1
4,202,864 + DDA3937_RS18395 0.56 -0.8
4,202,927 - DDA3937_RS18395 0.63 -3.1
4,202,927 - DDA3937_RS18395 0.63 -1.8
4,202,974 + DDA3937_RS18395 0.68 -0.6
4,203,045 - DDA3937_RS18395 0.75 +0.5
4,203,045 - DDA3937_RS18395 0.75 -0.4
4,203,202 + -0.3
4,203,203 - +0.8
4,203,341 + DDA3937_RS23345 0.14 -2.5
4,203,341 + DDA3937_RS23345 0.14 +0.8
4,203,341 + DDA3937_RS23345 0.14 -1.0
4,203,342 - DDA3937_RS23345 0.14 -0.2
4,203,345 - DDA3937_RS23345 0.16 +0.4
4,203,345 - DDA3937_RS23345 0.16 +0.1
4,203,356 - DDA3937_RS23345 0.20 -0.1
4,203,416 - DDA3937_RS23345 0.44 +0.5
4,203,502 + DDA3937_RS23345 0.79 -0.9
4,203,552 + -0.4
4,203,552 + +0.8
4,203,552 + -0.2
4,203,553 - +0.8
4,203,553 - +0.2
4,203,579 - -0.6
4,203,584 + -0.6
4,203,584 + -0.2
4,203,585 - +0.8
4,203,621 + -0.8
4,203,649 - -0.2
4,203,650 + +1.3
4,203,650 + -1.7
4,203,650 + -0.1
4,203,650 + -0.6
4,203,651 - +0.7
4,203,651 - +0.6
4,203,651 - +0.3
4,203,651 - +0.0
4,203,846 + DDA3937_RS18400 0.33 -0.0
4,203,846 + DDA3937_RS18400 0.33 +0.3
4,203,846 + DDA3937_RS18400 0.33 +1.3
4,203,847 - DDA3937_RS18400 0.34 +1.5
4,203,847 - DDA3937_RS18400 0.34 +0.0
4,203,911 + DDA3937_RS18400 0.42 -1.2
4,203,912 - DDA3937_RS18400 0.42 -1.1
4,203,912 - DDA3937_RS18400 0.42 -3.1
4,203,912 - DDA3937_RS18400 0.42 -2.0
4,203,927 + DDA3937_RS18400 0.44 +0.2
4,204,014 + DDA3937_RS18400 0.55 +0.5
4,204,015 - DDA3937_RS18400 0.55 -0.9
4,204,015 - DDA3937_RS18400 0.55 +0.4
4,204,015 - DDA3937_RS18400 0.55 -1.9
4,204,016 + DDA3937_RS18400 0.55 +1.8
4,204,016 + DDA3937_RS18400 0.55 +0.5
4,204,016 + DDA3937_RS18400 0.55 +1.1
4,204,016 + DDA3937_RS18400 0.55 -1.9
4,204,016 + DDA3937_RS18400 0.55 -3.1
4,204,017 - DDA3937_RS18400 0.55 -0.3
4,204,017 - DDA3937_RS18400 0.55 -1.3
4,204,017 - DDA3937_RS18400 0.55 -0.6
4,204,017 - DDA3937_RS18400 0.55 -1.6
4,204,017 - DDA3937_RS18400 0.55 +0.0
4,204,107 + DDA3937_RS18400 0.67 -0.6
4,204,107 + DDA3937_RS18400 0.67 -1.6
4,204,107 + DDA3937_RS18400 0.67 -0.4
4,204,108 - DDA3937_RS18400 0.67 -0.2
4,204,150 + DDA3937_RS18400 0.72 -0.7
4,204,151 - DDA3937_RS18400 0.73 +0.3
4,204,204 - DDA3937_RS18400 0.79 +0.1
4,204,296 + -0.1
4,204,297 - +0.4
4,204,297 - +0.1
4,204,297 - -0.2
4,204,299 + +0.2
4,204,299 + +0.3
4,204,395 - -2.4
4,204,395 - -1.0
4,204,436 + -1.6
4,204,445 - -0.8
4,204,495 + +0.0
4,204,495 + +1.5
4,204,508 - -0.6
4,204,623 - -2.2
4,204,751 + DDA3937_RS18405 0.19 -4.4
4,204,751 + DDA3937_RS18405 0.19 -2.8
4,204,751 + DDA3937_RS18405 0.19 -1.6
4,204,751 + DDA3937_RS18405 0.19 -3.8
4,204,751 + DDA3937_RS18405 0.19 -4.8
4,204,751 + DDA3937_RS18405 0.19 -1.2
4,204,751 + DDA3937_RS18405 0.19 -0.2
4,204,751 + DDA3937_RS18405 0.19 +1.0
4,204,751 + DDA3937_RS18405 0.19 -1.8
4,204,751 + DDA3937_RS18405 0.19 -5.1
4,204,751 + DDA3937_RS18405 0.19 -3.4
4,204,751 + DDA3937_RS18405 0.19 -3.8
4,204,752 - DDA3937_RS18405 0.19 -2.9
4,204,752 - DDA3937_RS18405 0.19 -2.6
4,204,752 - DDA3937_RS18405 0.19 -3.4
4,204,752 - DDA3937_RS18405 0.19 -0.8
4,204,752 - DDA3937_RS18405 0.19 -0.8
4,204,752 - DDA3937_RS18405 0.19 -0.8
4,204,752 - DDA3937_RS18405 0.19 -1.2
4,204,752 - DDA3937_RS18405 0.19 -1.3
4,204,752 - DDA3937_RS18405 0.19 -1.1
4,204,752 - DDA3937_RS18405 0.19 -5.8
4,204,753 + DDA3937_RS18405 0.19 -2.8
4,204,753 + DDA3937_RS18405 0.19 -2.0
4,204,754 - DDA3937_RS18405 0.19 -2.2
4,204,781 + DDA3937_RS18405 0.21 -2.8
4,204,781 + DDA3937_RS18405 0.21 -4.3
4,204,782 - DDA3937_RS18405 0.21 -4.0
4,204,782 - DDA3937_RS18405 0.21 -5.0
4,204,782 - DDA3937_RS18405 0.21 -3.6
4,204,782 - DDA3937_RS18405 0.21 -4.6
4,204,782 - DDA3937_RS18405 0.21 -3.9
4,204,988 + DDA3937_RS18405 0.37 -2.6
4,204,989 - DDA3937_RS18405 0.37 -2.0
4,205,074 - DDA3937_RS18405 0.44 -2.0
4,205,074 - DDA3937_RS18405 0.44 -4.1
4,205,119 + DDA3937_RS18405 0.48 -4.9
4,205,119 + DDA3937_RS18405 0.48 -3.3
4,205,120 - DDA3937_RS18405 0.48 -2.5
4,205,120 - DDA3937_RS18405 0.48 -4.0
4,205,120 - DDA3937_RS18405 0.48 -0.8
4,205,122 + DDA3937_RS18405 0.48 -2.9
4,205,122 + DDA3937_RS18405 0.48 -3.5
4,205,122 + DDA3937_RS18405 0.48 -3.9
4,205,123 - DDA3937_RS18405 0.48 -4.4
4,205,123 - DDA3937_RS18405 0.48 -2.8
4,205,123 - DDA3937_RS18405 0.48 -2.7
4,205,123 - DDA3937_RS18405 0.48 -2.9
4,205,258 + DDA3937_RS18405 0.58 -2.6
4,205,282 + DDA3937_RS18405 0.60 -2.4
4,205,283 - DDA3937_RS18405 0.60 -0.5
4,205,283 - DDA3937_RS18405 0.60 -0.8
4,205,283 - DDA3937_RS18405 0.60 -4.4
4,205,360 - DDA3937_RS18405 0.66 -2.6

Or see this region's nucleotide sequence