Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16745

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,809,682	+				+0.2
3,809,770	+		DDA3937_RS16740	0.42	-0.3
3,809,770	+		DDA3937_RS16740	0.42	-1.9
3,809,771	-		DDA3937_RS16740	0.42	-0.7
3,809,853	+		DDA3937_RS16740	0.49	+0.7
3,809,853	+		DDA3937_RS16740	0.49	-1.8
3,809,853	+		DDA3937_RS16740	0.49	+2.2
3,809,854	-		DDA3937_RS16740	0.49	+0.7
3,809,854	-		DDA3937_RS16740	0.49	-0.2
3,809,854	-		DDA3937_RS16740	0.49	-2.3
3,809,854	-		DDA3937_RS16740	0.49	-1.3
3,809,854	-		DDA3937_RS16740	0.49	-0.4
3,809,867	+		DDA3937_RS16740	0.50	-0.3
3,809,909	+		DDA3937_RS16740	0.54	+0.0
3,809,914	-		DDA3937_RS16740	0.54	-0.9
3,809,914	-		DDA3937_RS16740	0.54	+0.7
3,809,947	-		DDA3937_RS16740	0.57	-0.9
3,809,998	+		DDA3937_RS16740	0.61	-1.7
3,809,999	-		DDA3937_RS16740	0.61	-1.7
3,810,005	-		DDA3937_RS16740	0.62	+0.3
3,810,005	-		DDA3937_RS16740	0.62	+1.7
3,810,005	-		DDA3937_RS16740	0.62	+1.7
3,810,017	+		DDA3937_RS16740	0.63	+1.4
3,810,216	-		DDA3937_RS16740	0.79	-0.0
3,810,255	+		DDA3937_RS16740	0.82	+1.9
3,810,255	+		DDA3937_RS16740	0.82	+1.7
3,810,256	-		DDA3937_RS16740	0.82	+0.8
3,810,292	+		DDA3937_RS16740	0.85	+1.1
3,810,292	+		DDA3937_RS16740	0.85	-1.1
3,810,292	+		DDA3937_RS16740	0.85	+0.3
3,810,304	+		DDA3937_RS16740	0.86	+1.6
3,810,304	+		DDA3937_RS16740	0.86	+1.5
3,810,304	+		DDA3937_RS16740	0.86	+1.4
3,810,304	+		DDA3937_RS16740	0.86	+0.4
3,810,305	-		DDA3937_RS16740	0.86	-0.2
3,810,305	-		DDA3937_RS16740	0.86	+0.2
3,810,343	+		DDA3937_RS16740	0.90	+1.0
3,810,343	+		DDA3937_RS16740	0.90	+0.8
3,810,349	+				+1.1
3,810,350	-				+0.1
3,810,350	-				-0.5
3,810,395	+				+1.3
3,810,395	+				+1.3
3,810,395	+				-1.9
3,810,395	+				+0.3
3,810,396	-				-1.9
3,810,396	-				-0.7
3,810,396	-				+0.9
3,810,396	-				-1.3
3,810,396	-				-0.3
3,810,396	-				+4.0
3,810,470	-				-1.3
3,810,494	+				+0.6
3,810,548	+				+1.8
3,810,679	+		DDA3937_RS16745	0.15	+2.2
3,810,679	+		DDA3937_RS16745	0.15	-0.1
3,810,680	-		DDA3937_RS16745	0.15	-1.0
3,810,684	-		DDA3937_RS16745	0.15	-0.1
3,810,684	-		DDA3937_RS16745	0.15	+0.3
3,810,767	-		DDA3937_RS16745	0.26	+1.4
3,810,767	-		DDA3937_RS16745	0.26	-0.2
3,810,800	+		DDA3937_RS16745	0.30	+1.6
3,810,819	+		DDA3937_RS16745	0.33	+1.7
3,810,820	-		DDA3937_RS16745	0.33	-1.7
3,810,820	-		DDA3937_RS16745	0.33	-0.1
3,810,857	+		DDA3937_RS16745	0.38	+1.1
3,810,858	-		DDA3937_RS16745	0.38	+1.0
3,810,858	-		DDA3937_RS16745	0.38	-0.5
3,810,872	-		DDA3937_RS16745	0.40	+0.7
3,810,872	-		DDA3937_RS16745	0.40	-0.3
3,810,897	+		DDA3937_RS16745	0.43	+2.1
3,810,897	+		DDA3937_RS16745	0.43	-0.1
3,810,897	+		DDA3937_RS16745	0.43	+1.9
3,810,898	-		DDA3937_RS16745	0.43	-0.6
3,810,898	-		DDA3937_RS16745	0.43	-1.7
3,810,898	-		DDA3937_RS16745	0.43	-0.8
3,810,898	-		DDA3937_RS16745	0.43	-1.0
3,810,991	-		DDA3937_RS16745	0.56	-1.7
3,811,077	-		DDA3937_RS16745	0.67	-0.6
3,811,131	+		DDA3937_RS16745	0.74	+0.9
3,811,236	-		DDA3937_RS16745	0.88	-2.7
3,811,331	+				+0.6
3,811,331	+				+1.9
3,811,332	-				+0.1
3,811,339	+				+1.1
3,811,355	-				-1.1
3,811,371	-		DDA3937_RS16750	0.13	-1.4
3,811,582	-		DDA3937_RS16750	0.75	-1.3
3,811,600	+		DDA3937_RS16750	0.80	+1.8
3,811,601	-		DDA3937_RS16750	0.80	+1.4
3,811,601	-		DDA3937_RS16750	0.80	-1.1
3,811,601	-		DDA3937_RS16750	0.80	-0.3
3,811,604	-		DDA3937_RS16750	0.81	-0.0
3,811,604	-		DDA3937_RS16750	0.81	-1.0
3,811,630	-		DDA3937_RS16750	0.89	-0.2
3,811,636	+				+1.6
3,811,636	+				-0.9
3,811,636	+				+0.9
3,811,636	+				+1.2
3,811,637	-				-0.3
3,811,637	-				-2.3
3,811,637	-				-1.7
3,811,639	+				+1.1
3,811,639	+				+0.6
3,811,640	-				+0.7
3,811,640	-				-2.3
3,811,640	-				-0.4
3,811,640	-				+0.0
3,811,640	-				-1.6
3,811,643	+				+1.7
3,811,643	+				+1.9
3,811,643	+				+2.6
3,811,643	+				-0.0
3,811,644	-				-0.5
3,811,644	-				-1.3
3,811,644	-				+0.7
3,811,644	-				-1.8
3,811,672	-				+0.9
3,811,672	-				-1.6
3,811,672	-				+0.2
3,811,707	+				+1.0
3,811,708	-				+0.4
3,811,708	-				+0.7
3,811,708	-				-0.6
3,811,738	-				-1.3
3,811,738	-				-0.9
3,811,758	-				-0.5
3,811,758	-				-0.4
3,811,758	-				-1.3
3,811,764	+				+0.2
3,811,787	-				-2.5
3,811,790	+				-0.8
3,811,795	-				-1.9
3,811,810	+				-0.3
3,811,810	+				+0.7
3,811,880	+				-1.7
3,811,880	+				-1.5
3,811,881	-				-1.6
3,811,946	+		DDA3937_RS16755	0.20	-0.9
3,811,946	+		DDA3937_RS16755	0.20	-1.3
3,811,946	+		DDA3937_RS16755	0.20	-2.5
3,811,946	+		DDA3937_RS16755	0.20	-1.8
3,811,946	+		DDA3937_RS16755	0.20	-1.3
3,811,947	-		DDA3937_RS16755	0.20	-1.8
3,811,947	-		DDA3937_RS16755	0.20	-1.3
3,811,947	-		DDA3937_RS16755	0.20	-1.7
3,811,979	+		DDA3937_RS16755	0.27	+0.7
3,811,979	+		DDA3937_RS16755	0.27	-1.4
3,811,979	+		DDA3937_RS16755	0.27	-1.9
3,811,980	-		DDA3937_RS16755	0.27	-2.6
3,812,027	+		DDA3937_RS16755	0.36	-0.8
3,812,182	-		DDA3937_RS16755	0.66	-3.8
3,812,187	+		DDA3937_RS16755	0.67	-1.7
3,812,187	+		DDA3937_RS16755	0.67	-1.7
3,812,187	+		DDA3937_RS16755	0.67	-2.0
3,812,187	+		DDA3937_RS16755	0.67	-2.9
3,812,187	+		DDA3937_RS16755	0.67	-3.2
3,812,187	+		DDA3937_RS16755	0.67	+0.1
3,812,187	+		DDA3937_RS16755	0.67	-2.0
3,812,188	-		DDA3937_RS16755	0.67	-1.3
3,812,188	-		DDA3937_RS16755	0.67	-1.3
3,812,188	-		DDA3937_RS16755	0.67	-0.9
3,812,188	-		DDA3937_RS16755	0.67	-0.8
3,812,188	-		DDA3937_RS16755	0.67	+0.2
3,812,188	-		DDA3937_RS16755	0.67	-1.0
3,812,188	-		DDA3937_RS16755	0.67	-1.5
3,812,252	+		DDA3937_RS16755	0.80	-1.2