Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS13720 and DDA3937_RS13725 are separated by 75 nucleotides DDA3937_RS13725 and DDA3937_RS13730 are separated by 384 nucleotides DDA3937_RS13730 and DDA3937_RS13735 are separated by 161 nucleotides
DDA3937_RS13720: DDA3937_RS13720 - D-serine/D-alanine/glycine transporter, at 3,124,304 to 3,125,707
_RS13720
DDA3937_RS13725: DDA3937_RS13725 - LysR family transcriptional regulator, at 3,125,783 to 3,126,049
_RS13725
DDA3937_RS13730: DDA3937_RS13730 - tRNA-Asn, at 3,126,434 to 3,126,509
_RS13730
DDA3937_RS13735: DDA3937_RS13735 - integrase arm-type DNA-binding domain-containing protein, at 3,126,671 to 3,127,954
_RS13735
Position (kb) 3125
3126
3127 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3124.847 kb on - strand, within DDA3937_RS13720 at 3124.859 kb on - strand, within DDA3937_RS13720 at 3124.859 kb on - strand, within DDA3937_RS13720 at 3124.891 kb on + strand, within DDA3937_RS13720 at 3124.892 kb on - strand, within DDA3937_RS13720 at 3124.956 kb on + strand, within DDA3937_RS13720 at 3124.956 kb on + strand, within DDA3937_RS13720 at 3124.957 kb on - strand, within DDA3937_RS13720 at 3125.068 kb on + strand, within DDA3937_RS13720 at 3125.068 kb on + strand, within DDA3937_RS13720 at 3125.075 kb on + strand, within DDA3937_RS13720 at 3125.075 kb on + strand, within DDA3937_RS13720 at 3125.076 kb on - strand, within DDA3937_RS13720 at 3125.076 kb on - strand, within DDA3937_RS13720 at 3125.098 kb on + strand, within DDA3937_RS13720 at 3125.098 kb on + strand, within DDA3937_RS13720 at 3125.098 kb on + strand, within DDA3937_RS13720 at 3125.098 kb on + strand, within DDA3937_RS13720 at 3125.098 kb on + strand, within DDA3937_RS13720 at 3125.098 kb on + strand, within DDA3937_RS13720 at 3125.098 kb on + strand, within DDA3937_RS13720 at 3125.099 kb on - strand, within DDA3937_RS13720 at 3125.384 kb on + strand, within DDA3937_RS13720 at 3125.384 kb on + strand, within DDA3937_RS13720 at 3125.388 kb on + strand, within DDA3937_RS13720 at 3125.388 kb on + strand, within DDA3937_RS13720 at 3125.389 kb on - strand, within DDA3937_RS13720 at 3125.389 kb on - strand, within DDA3937_RS13720 at 3125.461 kb on + strand, within DDA3937_RS13720 at 3125.462 kb on - strand, within DDA3937_RS13720 at 3125.462 kb on - strand, within DDA3937_RS13720 at 3125.477 kb on + strand, within DDA3937_RS13720 at 3125.477 kb on + strand, within DDA3937_RS13720 at 3125.477 kb on + strand, within DDA3937_RS13720 at 3125.486 kb on + strand, within DDA3937_RS13720 at 3125.487 kb on - strand, within DDA3937_RS13720 at 3125.487 kb on - strand, within DDA3937_RS13720 at 3125.526 kb on - strand, within DDA3937_RS13720 at 3125.544 kb on + strand, within DDA3937_RS13720 at 3125.544 kb on + strand, within DDA3937_RS13720 at 3125.545 kb on - strand, within DDA3937_RS13720 at 3125.545 kb on - strand, within DDA3937_RS13720 at 3125.545 kb on - strand, within DDA3937_RS13720 at 3125.547 kb on + strand, within DDA3937_RS13720 at 3125.547 kb on + strand, within DDA3937_RS13720 at 3125.548 kb on - strand, within DDA3937_RS13720 at 3125.548 kb on - strand, within DDA3937_RS13720 at 3125.559 kb on + strand, within DDA3937_RS13720 at 3125.560 kb on - strand, within DDA3937_RS13720 at 3125.589 kb on + strand at 3125.589 kb on + strand at 3125.589 kb on + strand at 3125.589 kb on + strand at 3125.590 kb on - strand at 3125.590 kb on - strand at 3125.632 kb on + strand at 3125.714 kb on - strand at 3125.733 kb on + strand at 3125.734 kb on - strand at 3125.744 kb on - strand at 3125.744 kb on - strand at 3125.744 kb on - strand at 3125.744 kb on - strand at 3125.757 kb on + strand at 3125.757 kb on + strand at 3125.758 kb on - strand at 3125.758 kb on - strand at 3125.758 kb on - strand at 3125.775 kb on + strand at 3125.795 kb on + strand at 3126.028 kb on - strand at 3126.064 kb on + strand at 3126.068 kb on + strand at 3126.068 kb on + strand at 3126.068 kb on + strand at 3126.069 kb on - strand at 3126.069 kb on - strand at 3126.074 kb on + strand at 3126.075 kb on - strand at 3126.078 kb on + strand at 3126.078 kb on + strand at 3126.079 kb on - strand at 3126.079 kb on - strand at 3126.082 kb on - strand at 3126.082 kb on - strand at 3126.146 kb on + strand at 3126.156 kb on + strand at 3126.189 kb on + strand at 3126.189 kb on + strand at 3126.190 kb on - strand at 3126.190 kb on - strand at 3126.190 kb on - strand at 3126.192 kb on + strand at 3126.192 kb on + strand at 3126.264 kb on - strand at 3126.264 kb on - strand at 3126.331 kb on - strand at 3126.331 kb on - strand at 3126.348 kb on + strand at 3126.411 kb on + strand at 3126.427 kb on + strand at 3126.427 kb on + strand at 3126.476 kb on + strand, within DDA3937_RS13730 at 3126.476 kb on + strand, within DDA3937_RS13730 at 3126.542 kb on + strand at 3126.565 kb on + strand at 3126.575 kb on + strand at 3126.679 kb on + strand at 3126.702 kb on + strand at 3126.756 kb on + strand at 3126.756 kb on + strand at 3126.756 kb on + strand at 3126.757 kb on - strand at 3126.757 kb on - strand at 3126.757 kb on - strand at 3126.786 kb on - strand at 3126.795 kb on - strand at 3126.805 kb on + strand, within DDA3937_RS13735 at 3126.806 kb on - strand, within DDA3937_RS13735 at 3126.828 kb on + strand, within DDA3937_RS13735 at 3126.828 kb on + strand at 3126.829 kb on - strand, within DDA3937_RS13735 at 3126.829 kb on - strand, within DDA3937_RS13735 at 3126.832 kb on + strand, within DDA3937_RS13735 at 3126.833 kb on - strand, within DDA3937_RS13735 at 3126.836 kb on + strand, within DDA3937_RS13735 at 3126.837 kb on - strand, within DDA3937_RS13735 at 3126.837 kb on - strand, within DDA3937_RS13735 at 3126.846 kb on + strand, within DDA3937_RS13735 at 3126.886 kb on + strand, within DDA3937_RS13735 at 3126.904 kb on + strand, within DDA3937_RS13735 at 3126.904 kb on + strand, within DDA3937_RS13735 at 3127.049 kb on + strand, within DDA3937_RS13735
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 3,124,847 - DDA3937_RS13720 0.39 -0.6 3,124,859 - DDA3937_RS13720 0.40 -0.4 3,124,859 - DDA3937_RS13720 0.40 +0.1 3,124,891 + DDA3937_RS13720 0.42 +1.6 3,124,892 - DDA3937_RS13720 0.42 +0.3 3,124,956 + DDA3937_RS13720 0.46 -0.9 3,124,956 + DDA3937_RS13720 0.46 -0.2 3,124,957 - DDA3937_RS13720 0.47 -1.5 3,125,068 + DDA3937_RS13720 0.54 +0.6 3,125,068 + DDA3937_RS13720 0.54 -0.6 3,125,075 + DDA3937_RS13720 0.55 -0.6 3,125,075 + DDA3937_RS13720 0.55 -0.3 3,125,076 - DDA3937_RS13720 0.55 +0.3 3,125,076 - DDA3937_RS13720 0.55 -1.1 3,125,098 + DDA3937_RS13720 0.57 +1.3 3,125,098 + DDA3937_RS13720 0.57 +0.1 3,125,098 + DDA3937_RS13720 0.57 -1.5 3,125,098 + DDA3937_RS13720 0.57 +0.2 3,125,098 + DDA3937_RS13720 0.57 -2.3 3,125,098 + DDA3937_RS13720 0.57 +0.7 3,125,098 + DDA3937_RS13720 0.57 +0.5 3,125,099 - DDA3937_RS13720 0.57 -0.9 3,125,384 + DDA3937_RS13720 0.77 +0.1 3,125,384 + DDA3937_RS13720 0.77 -2.2 3,125,388 + DDA3937_RS13720 0.77 +0.3 3,125,388 + DDA3937_RS13720 0.77 -0.0 3,125,389 - DDA3937_RS13720 0.77 -0.5 3,125,389 - DDA3937_RS13720 0.77 +1.7 3,125,461 + DDA3937_RS13720 0.82 -0.6 3,125,462 - DDA3937_RS13720 0.82 +0.3 3,125,462 - DDA3937_RS13720 0.82 -2.5 3,125,477 + DDA3937_RS13720 0.84 -0.7 3,125,477 + DDA3937_RS13720 0.84 -0.6 3,125,477 + DDA3937_RS13720 0.84 -0.5 3,125,486 + DDA3937_RS13720 0.84 +0.0 3,125,487 - DDA3937_RS13720 0.84 -2.3 3,125,487 - DDA3937_RS13720 0.84 -0.9 3,125,526 - DDA3937_RS13720 0.87 +0.8 3,125,544 + DDA3937_RS13720 0.88 -0.4 3,125,544 + DDA3937_RS13720 0.88 -2.0 3,125,545 - DDA3937_RS13720 0.88 -2.3 3,125,545 - DDA3937_RS13720 0.88 -1.0 3,125,545 - DDA3937_RS13720 0.88 +0.5 3,125,547 + DDA3937_RS13720 0.89 -0.2 3,125,547 + DDA3937_RS13720 0.89 -1.7 3,125,548 - DDA3937_RS13720 0.89 -0.5 3,125,548 - DDA3937_RS13720 0.89 +0.1 3,125,559 + DDA3937_RS13720 0.89 +0.2 3,125,560 - DDA3937_RS13720 0.89 -0.1 3,125,589 + -0.1 3,125,589 + -0.2 3,125,589 + -1.0 3,125,589 + +1.5 3,125,590 - +0.1 3,125,590 - -1.7 3,125,632 + +1.0 3,125,714 - -2.3 3,125,733 + -1.2 3,125,734 - +0.3 3,125,744 - -0.9 3,125,744 - +0.3 3,125,744 - -0.2 3,125,744 - +0.8 3,125,757 + +0.7 3,125,757 + -0.3 3,125,758 - -0.5 3,125,758 - -2.5 3,125,758 - -1.0 3,125,775 + -1.2 3,125,795 + -1.0 3,126,028 - -1.3 3,126,064 + +0.2 3,126,068 + -1.3 3,126,068 + +0.9 3,126,068 + -1.2 3,126,069 - +1.3 3,126,069 - +0.0 3,126,074 + +0.6 3,126,075 - -0.6 3,126,078 + +2.2 3,126,078 + -1.5 3,126,079 - -1.5 3,126,079 - -0.3 3,126,082 - +0.4 3,126,082 - +1.0 3,126,146 + -0.3 3,126,156 + -0.3 3,126,189 + -0.5 3,126,189 + +0.3 3,126,190 - -0.1 3,126,190 - -0.5 3,126,190 - +0.9 3,126,192 + -1.0 3,126,192 + +3.1 3,126,264 - -1.7 3,126,264 - -0.5 3,126,331 - -0.4 3,126,331 - -0.2 3,126,348 + -0.3 3,126,411 + -0.9 3,126,427 + +0.4 3,126,427 + -0.7 3,126,476 + DDA3937_RS13730 0.55 -0.7 3,126,476 + DDA3937_RS13730 0.55 +2.1 3,126,542 + -0.7 3,126,565 + -0.7 3,126,575 + +0.2 3,126,679 + -1.0 3,126,702 + -0.8 3,126,756 + -0.7 3,126,756 + -0.6 3,126,756 + -1.3 3,126,757 - -1.1 3,126,757 - +1.4 3,126,757 - +1.0 3,126,786 - +0.3 3,126,795 - +0.5 3,126,805 + DDA3937_RS13735 0.10 -1.0 3,126,806 - DDA3937_RS13735 0.11 -1.0 3,126,828 + DDA3937_RS13735 0.12 -1.4 3,126,828 + +0.3 3,126,829 - DDA3937_RS13735 0.12 +1.0 3,126,829 - DDA3937_RS13735 0.12 -1.7 3,126,832 + DDA3937_RS13735 0.13 -1.3 3,126,833 - DDA3937_RS13735 0.13 +0.5 3,126,836 + DDA3937_RS13735 0.13 -0.2 3,126,837 - DDA3937_RS13735 0.13 -0.3 3,126,837 - DDA3937_RS13735 0.13 -1.9 3,126,846 + DDA3937_RS13735 0.14 +0.1 3,126,886 + DDA3937_RS13735 0.17 +0.1 3,126,904 + DDA3937_RS13735 0.18 -0.1 3,126,904 + DDA3937_RS13735 0.18 -0.2 3,127,049 + DDA3937_RS13735 0.29 +1.9
Or see this region's nucleotide sequence