Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13570

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,089,802	-				+4.6
3,089,802	-				+4.1
3,089,820	+				+3.6
3,089,820	+				+3.3
3,089,821	-				+4.0
3,089,867	+		DDA3937_RS13565	0.14	+7.4
3,089,867	+		DDA3937_RS13565	0.14	+2.5
3,089,868	-		DDA3937_RS13565	0.14	+3.0
3,089,870	+		DDA3937_RS13565	0.15	+3.6
3,089,871	-		DDA3937_RS13565	0.15	+1.1
3,089,871	-		DDA3937_RS13565	0.15	+4.0
3,089,891	-		DDA3937_RS13565	0.21	+5.3
3,089,936	+		DDA3937_RS13565	0.33	+4.3
3,089,937	-		DDA3937_RS13565	0.34	+3.8
3,089,940	-		DDA3937_RS13565	0.34	+5.1
3,089,944	+		DDA3937_RS13565	0.36	+4.5
3,089,950	+		DDA3937_RS13565	0.37	+5.4
3,089,950	+		DDA3937_RS13565	0.37	+4.6
3,089,951	-		DDA3937_RS13565	0.38	+4.8
3,089,978	+		DDA3937_RS13565	0.45	+4.5
3,089,978	+		DDA3937_RS13565	0.45	+5.5
3,089,979	-		DDA3937_RS13565	0.46	+4.1
3,089,981	+		DDA3937_RS13565	0.46	+3.6
3,089,981	+		DDA3937_RS13565	0.46	+4.1
3,089,981	+		DDA3937_RS13565	0.46	+5.8
3,089,982	-		DDA3937_RS13565	0.46	+4.2
3,089,982	-		DDA3937_RS13565	0.46	+4.2
3,089,982	-		DDA3937_RS13565	0.46	+3.4
3,089,982	-		DDA3937_RS13565	0.46	+4.8
3,089,982	-		DDA3937_RS13565	0.46	+4.5
3,090,005	+		DDA3937_RS13565	0.53	+5.2
3,090,006	-		DDA3937_RS13565	0.53	+4.1
3,090,099	-		DDA3937_RS13565	0.80	+3.6
3,090,138	+				+3.9
3,090,138	+				+4.3
3,090,138	+				+4.4
3,090,139	-				+4.6
3,090,139	-				+3.2
3,090,139	-				+5.0
3,090,139	-				+3.8
3,090,169	+				+5.4
3,090,188	+				+4.2
3,090,188	+				+5.5
3,090,188	+				+4.3
3,090,188	+				+5.2
3,090,188	+				+3.6
3,090,189	-				+3.8
3,090,189	-				+3.2
3,090,201	+				+4.8
3,090,201	+				+3.2
3,090,201	+				+4.9
3,090,202	-				+3.8
3,090,202	-				+3.7
3,090,202	-				+3.6
3,090,202	-				+0.8
3,090,202	-				+3.6
3,090,206	+				+4.4
3,090,213	+				+4.2
3,090,213	+				+3.3
3,090,213	+				+5.2
3,090,213	+				+2.8
3,090,213	+				+4.3
3,090,246	+				+4.2
3,090,247	-				+2.0
3,090,247	-				+1.1
3,090,263	-				-1.0
3,090,275	+				+4.1
3,090,276	-				+2.5
3,090,282	-				-0.0
3,090,284	+				+4.4
3,090,285	-				+0.7
3,090,289	+				+6.4
3,090,289	+				+4.2
3,090,289	+				+4.0
3,090,290	-				+1.5
3,090,291	+				+5.4
3,090,291	+				+5.2
3,090,292	-				+4.4
3,090,292	-				+1.0
3,090,300	-				+1.7
3,090,303	-				+3.5
3,090,303	-				-2.9
3,090,381	-				+1.3
3,090,394	+				+3.1
3,090,395	-				+1.8
3,090,395	-				+2.2
3,090,395	-				+3.0
3,090,401	+				+4.3
3,090,401	+				+4.7
3,090,401	+				+5.3
3,090,401	+				+4.7
3,090,402	-				+4.2
3,090,402	-				+0.6
3,090,402	-				-1.0
3,090,408	-				+1.2
3,090,413	+				+3.8
3,090,444	-				+2.6
3,090,463	+				+5.5
3,090,463	+				+5.9
3,090,463	+				+4.5
3,090,463	+				+4.4
3,090,463	+				+2.9
3,090,464	-				+0.5
3,090,464	-				+2.6
3,090,465	+				+4.6
3,090,466	-				+3.7
3,090,466	-				+0.3
3,090,481	+				+3.2
3,090,522	+				-0.1
3,090,567	+				-2.5
3,090,568	-				-3.0
3,090,601	+				-2.0
3,090,705	+				+0.8
3,090,719	+				-0.7
3,090,767	-				+2.1
3,090,768	+				-0.2
3,090,807	+				-0.6
3,090,864	+				-2.0
3,090,886	+				-0.6
3,090,963	+		DDA3937_RS13570	0.15	-1.7
3,090,964	-		DDA3937_RS13570	0.15	-0.7
3,090,965	+		DDA3937_RS13570	0.15	-0.0
3,090,965	+		DDA3937_RS13570	0.15	-0.0
3,091,005	+		DDA3937_RS13570	0.18	+1.3
3,091,006	-		DDA3937_RS13570	0.19	-0.7
3,091,139	+		DDA3937_RS13570	0.30	-0.5
3,091,140	-		DDA3937_RS13570	0.30	-0.2
3,091,270	-		DDA3937_RS13570	0.41	+0.2
3,091,271	+		DDA3937_RS13570	0.41	+0.3
3,091,271	+		DDA3937_RS13570	0.41	-0.2
3,091,271	+		DDA3937_RS13570	0.41	-1.7
3,091,272	-		DDA3937_RS13570	0.42	+0.4
3,091,286	-		DDA3937_RS13570	0.43	+1.0
3,091,286	-		DDA3937_RS13570	0.43	-1.7
3,091,323	+		DDA3937_RS13570	0.46	-1.9
3,091,358	-		DDA3937_RS13570	0.49	-0.0
3,091,379	-		DDA3937_RS13570	0.51	+0.6
3,091,389	+		DDA3937_RS13570	0.52	-2.3
3,091,390	-		DDA3937_RS13570	0.52	-0.2
3,091,399	-		DDA3937_RS13570	0.53	+0.1
3,091,454	-		DDA3937_RS13570	0.57	+0.3
3,091,456	+		DDA3937_RS13570	0.57	-0.7
3,091,457	-		DDA3937_RS13570	0.58	+1.1
3,091,457	-		DDA3937_RS13570	0.58	-0.3
3,091,457	-		DDA3937_RS13570	0.58	-0.0
3,091,478	-		DDA3937_RS13570	0.59	+0.4
3,091,494	+		DDA3937_RS13570	0.61	-2.5
3,091,494	+		DDA3937_RS13570	0.61	-0.9
3,091,494	+		DDA3937_RS13570	0.61	-0.5
3,091,495	-		DDA3937_RS13570	0.61	-0.6
3,091,495	-		DDA3937_RS13570	0.61	+0.4
3,091,495	-		DDA3937_RS13570	0.61	-0.0
3,091,495	-		DDA3937_RS13570	0.61	+0.9
3,091,514	+		DDA3937_RS13570	0.63	-0.2
3,091,514	+		DDA3937_RS13570	0.63	-1.8
3,091,514	+		DDA3937_RS13570	0.63	-0.9
3,091,515	-		DDA3937_RS13570	0.63	+0.9
3,091,515	-		DDA3937_RS13570	0.63	-1.7
3,091,798	+		DDA3937_RS13570	0.87	-0.7
3,091,819	-		DDA3937_RS13570	0.89	+0.2
3,091,970	+				-0.4
3,091,970	+				+0.3
3,091,970	+				-0.0
3,091,970	+				-0.7
3,091,971	-				+0.3
3,091,982	+				+0.4
3,091,982	+				-1.0
3,091,982	+				-0.0
3,091,982	+				-2.3
3,091,983	-				+1.3
3,091,983	-				-0.7
3,091,983	-				+0.9
3,091,995	+				-0.4
3,091,996	-				+0.3
3,092,028	-				-0.7
3,092,047	+				-1.7
3,092,048	-				+1.5
3,092,055	+				-0.5
3,092,067	+				-1.0
3,092,067	+				-2.9
3,092,067	+				-2.5
3,092,068	-				-0.3
3,092,069	+				-0.7
3,092,069	+				-1.3
3,092,071	+				-1.5
3,092,071	+				-0.5
3,092,072	-				-0.9
3,092,072	-				+0.1
3,092,075	+				-0.7
3,092,090	+				+0.3
3,092,090	+				-0.6
3,092,091	-				-0.7
3,092,148	+				-1.6
3,092,148	+				+0.3
3,092,148	+				-2.4
3,092,149	-				-0.7
3,092,149	-				+0.3
3,092,149	-				+0.0
3,092,149	-				+0.1
3,092,150	+				-0.0
3,092,150	+				+0.7
3,092,151	-				-1.6
3,092,151	-				-1.3
3,092,161	+				-1.5
3,092,162	-				+2.5
3,092,162	-				-1.0
3,092,166	+				+1.4
3,092,166	+				-2.7
3,092,167	-				+1.5
3,092,174	+				-1.4
3,092,175	-				+0.0
3,092,182	+				-1.7
3,092,229	-				+0.3
3,092,229	-				-0.3
3,092,229	-				+0.8
3,092,229	-				-0.7
3,092,229	-				-0.5
3,092,240	+				+0.3
3,092,240	+				-2.0
3,092,240	+				-2.4
3,092,241	-				-0.3
3,092,241	-				+4.7
3,092,241	-				-0.3
3,092,244	-				+0.1
3,092,254	+				-0.3
3,092,254	+				-2.3
3,092,255	-				+1.6
3,092,255	-				+1.6
3,092,255	-				+0.3
3,092,255	-				-1.0
3,092,258	+				-1.3
3,092,258	+				-1.9
3,092,258	+				-0.0
3,092,259	-				+0.2
3,092,260	+				-0.8
3,092,260	+				-0.7
3,092,261	-				+1.3
3,092,320	+				-0.3
3,092,331	+				+0.9
3,092,339	-				-0.7
3,092,358	+				+2.0
3,092,358	+				-0.6
3,092,359	-				-0.1
3,092,392	-				-0.4
3,092,392	-				+0.4
3,092,420	+				-0.7
3,092,453	+				-0.5
3,092,453	+				+0.4
3,092,459	-		DDA3937_RS13575	0.10	+0.9
3,092,459	-		DDA3937_RS13575	0.10	+0.6
3,092,571	+				+0.3
3,092,571	+		DDA3937_RS13575	0.17	+0.1
3,092,571	+		DDA3937_RS13575	0.17	-1.0
3,092,572	-		DDA3937_RS13575	0.17	-0.3
3,092,572	-		DDA3937_RS13575	0.17	-1.3
3,092,572	-		DDA3937_RS13575	0.17	+0.5
3,092,578	+		DDA3937_RS13575	0.17	-1.0
3,092,637	-		DDA3937_RS13575	0.21	+0.9
3,092,637	-				+0.6
3,092,637	-		DDA3937_RS13575	0.21	-0.0
3,092,692	+		DDA3937_RS13575	0.24	-0.6
3,092,699	+		DDA3937_RS13575	0.24	+0.6
3,092,699	+		DDA3937_RS13575	0.24	-0.6
3,092,699	+		DDA3937_RS13575	0.24	+0.0
3,092,700	-		DDA3937_RS13575	0.24	-0.4
3,092,700	-		DDA3937_RS13575	0.24	+0.8
3,092,708	+		DDA3937_RS13575	0.25	-0.7
3,092,709	-		DDA3937_RS13575	0.25	-0.5
3,092,738	-		DDA3937_RS13575	0.26	-0.7
3,092,738	-		DDA3937_RS13575	0.26	-0.0
3,092,814	-		DDA3937_RS13575	0.31	-0.4
3,092,814	-		DDA3937_RS13575	0.31	-0.9
3,092,814	-		DDA3937_RS13575	0.31	-0.5
3,092,819	-		DDA3937_RS13575	0.31	-1.3
3,092,819	-		DDA3937_RS13575	0.31	-0.6
3,092,819	-		DDA3937_RS13575	0.31	+1.4
3,092,870	-		DDA3937_RS13575	0.34	-2.5
3,092,872	+		DDA3937_RS13575	0.34	+0.3
3,092,872	+		DDA3937_RS13575	0.34	+0.4
3,092,873	-		DDA3937_RS13575	0.34	+0.3
3,092,885	+		DDA3937_RS13575	0.35	+0.4
3,092,886	-		DDA3937_RS13575	0.35	-0.4
3,092,905	+		DDA3937_RS13575	0.36	+0.8
3,092,905	+		DDA3937_RS13575	0.36	+0.7
3,092,905	+		DDA3937_RS13575	0.36	+1.0
3,092,905	+		DDA3937_RS13575	0.36	+0.8
3,092,905	+		DDA3937_RS13575	0.36	-1.0
3,092,905	+		DDA3937_RS13575	0.36	-0.7
3,092,905	+		DDA3937_RS13575	0.36	+1.1
3,092,906	-		DDA3937_RS13575	0.36	-1.0
3,092,906	-				-1.0
3,092,906	-		DDA3937_RS13575	0.36	-0.5
3,092,906	-		DDA3937_RS13575	0.36	+1.1
3,092,906	-		DDA3937_RS13575	0.36	+0.6
3,092,906	-		DDA3937_RS13575	0.36	+0.6
3,092,906	-		DDA3937_RS13575	0.36	+0.3