Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13445

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,065,936	+				+3.8
3,065,941	+				+3.0
3,065,942	-				-0.1
3,065,948	+				-1.3
3,065,948	+				+0.5
3,065,948	+				+1.7
3,065,948	+				+1.5
3,065,948	+				+2.8
3,065,948	+				+2.2
3,065,948	+				+0.4
3,065,948	+				+2.2
3,065,948	+				+4.9
3,065,948	+				-1.0
3,065,948	+				+1.9
3,065,949	-				-1.3
3,065,949	-				+1.1
3,065,949	-				-0.5
3,065,949	-				+1.2
3,065,949	-				-1.7
3,065,949	-				-0.9
3,065,949	-				+0.3
3,065,949	-				+0.4
3,065,949	-				-1.5
3,065,949	-				+0.7
3,065,950	+				+2.4
3,065,950	+				+1.9
3,065,950	+				+2.7
3,065,950	+				+0.5
3,065,950	+				+4.0
3,065,950	+				+2.6
3,065,950	+				+2.8
3,065,951	-				-0.2
3,065,951	-				-0.6
3,065,951	-				-1.1
3,065,951	-				-2.0
3,065,951	-				-1.0
3,065,951	-				-1.0
3,065,951	-				+0.6
3,065,951	-				+1.2
3,065,951	-				+0.9
3,065,951	-				-2.5
3,065,951	-				-0.0
3,065,951	-				-0.5
3,065,951	-				-1.7
3,065,951	-				-0.8
3,065,951	-				-0.9
3,065,951	-				+1.9
3,065,951	-				+0.8
3,065,951	-				-0.1
3,065,955	-				+1.0
3,065,987	+				+0.3
3,066,012	+				+0.5
3,066,012	+				+0.9
3,066,012	+				+0.3
3,066,013	-				+0.5
3,066,013	-				-0.2
3,066,013	-				+1.1
3,066,013	-				-1.3
3,066,013	-				+0.9
3,066,014	+				+0.3
3,066,014	+				-0.5
3,066,015	-				+0.4
3,066,064	+				+2.3
3,066,064	+				+1.6
3,066,081	-		DDA3937_RS13440	0.10	+1.9
3,066,099	-		DDA3937_RS13440	0.12	-0.3
3,066,099	-		DDA3937_RS13440	0.12	+4.4
3,066,212	+		DDA3937_RS13440	0.24	+2.4
3,066,213	-		DDA3937_RS13440	0.24	+2.9
3,066,222	-		DDA3937_RS13440	0.25	+3.3
3,066,222	-		DDA3937_RS13440	0.25	+4.3
3,066,224	-		DDA3937_RS13440	0.25	+1.9
3,066,224	-		DDA3937_RS13440	0.25	+2.8
3,066,250	-		DDA3937_RS13440	0.28	+2.5
3,066,266	+		DDA3937_RS13440	0.29	+2.3
3,066,267	-		DDA3937_RS13440	0.30	+2.3
3,066,267	-		DDA3937_RS13440	0.30	+2.5
3,066,267	-		DDA3937_RS13440	0.30	-1.0
3,066,267	-		DDA3937_RS13440	0.30	+0.7
3,066,267	-		DDA3937_RS13440	0.30	+2.9
3,066,277	-		DDA3937_RS13440	0.31	+6.1
3,066,306	+		DDA3937_RS13440	0.34	+2.4
3,066,306	+		DDA3937_RS13440	0.34	+1.3
3,066,307	-		DDA3937_RS13440	0.34	+2.2
3,066,358	-		DDA3937_RS13440	0.39	+2.2
3,066,405	+		DDA3937_RS13440	0.44	+1.9
3,066,406	-		DDA3937_RS13440	0.44	+3.0
3,066,519	+		DDA3937_RS13440	0.56	+1.0
3,066,519	+		DDA3937_RS13440	0.56	+1.2
3,066,519	+		DDA3937_RS13440	0.56	+3.0
3,066,520	-		DDA3937_RS13440	0.56	+1.4
3,066,520	-		DDA3937_RS13440	0.56	+1.4
3,066,520	-		DDA3937_RS13440	0.56	+2.2
3,066,520	-		DDA3937_RS13440	0.56	+1.5
3,066,520	-		DDA3937_RS13440	0.56	+2.5
3,066,551	-		DDA3937_RS13440	0.59	+3.8
3,066,551	-		DDA3937_RS13440	0.59	+1.7
3,066,574	+		DDA3937_RS13440	0.62	+2.4
3,066,574	+		DDA3937_RS13440	0.62	+2.1
3,066,575	-		DDA3937_RS13440	0.62	+2.8
3,066,713	+		DDA3937_RS13440	0.76	+1.8
3,066,713	+		DDA3937_RS13440	0.76	+6.2
3,066,713	+		DDA3937_RS13440	0.76	-1.3
3,066,713	+		DDA3937_RS13440	0.76	+3.5
3,066,713	+		DDA3937_RS13440	0.76	+1.9
3,066,714	-		DDA3937_RS13440	0.77	+1.9
3,066,714	-		DDA3937_RS13440	0.77	+2.4
3,066,714	-		DDA3937_RS13440	0.77	+3.2
3,066,714	-		DDA3937_RS13440	0.77	+4.4
3,066,714	-		DDA3937_RS13440	0.77	+2.2
3,066,714	-		DDA3937_RS13440	0.77	+1.9
3,066,714	-		DDA3937_RS13440	0.77	+1.9
3,066,714	-		DDA3937_RS13440	0.77	+0.4
3,066,753	+		DDA3937_RS13440	0.81	+2.9
3,066,753	+		DDA3937_RS13440	0.81	+1.7
3,066,754	-		DDA3937_RS13440	0.81	+1.2
3,066,865	+				+2.6
3,066,865	+				+1.8
3,066,865	+				+3.8
3,066,865	+				+2.7
3,066,866	-				+2.0
3,066,866	-				+3.1
3,066,866	-				+4.5
3,066,866	-				+3.0
3,066,866	-				+2.4
3,066,866	-				+1.1
3,066,902	+				+2.0
3,066,902	+				+1.5
3,066,903	-				+1.4
3,066,903	-				+2.5
3,066,903	-				+1.9
3,066,903	-				+1.4
3,066,915	+				+1.9
3,066,915	+				+0.7
3,066,941	+				-1.7
3,067,013	+				+2.4
3,067,049	+		DDA3937_RS13445	0.10	+1.5
3,067,068	+		DDA3937_RS13445	0.12	+0.6
3,067,126	-		DDA3937_RS13445	0.17	+2.8
3,067,164	-		DDA3937_RS13445	0.21	+2.9
3,067,269	-		DDA3937_RS13445	0.30	+1.7
3,067,274	+		DDA3937_RS13445	0.30	+2.0
3,067,311	-		DDA3937_RS13445	0.34	+2.3
3,067,311	-		DDA3937_RS13445	0.34	+2.6
3,067,376	+		DDA3937_RS13445	0.40	+2.7
3,067,467	+		DDA3937_RS13445	0.48	+2.2
3,067,484	+		DDA3937_RS13445	0.49	+3.2
3,067,484	+		DDA3937_RS13445	0.49	-1.7
3,067,484	+		DDA3937_RS13445	0.49	+2.3
3,067,502	+		DDA3937_RS13445	0.51	+1.8
3,067,502	+		DDA3937_RS13445	0.51	+2.0
3,067,542	-		DDA3937_RS13445	0.55	+3.1
3,067,564	-		DDA3937_RS13445	0.57	+2.1
3,067,564	-		DDA3937_RS13445	0.57	+3.0
3,067,634	-		DDA3937_RS13445	0.63	+1.3
3,067,634	-		DDA3937_RS13445	0.63	+5.7
3,067,634	-		DDA3937_RS13445	0.63	+0.8
3,067,634	-		DDA3937_RS13445	0.63	+1.3
3,067,716	+		DDA3937_RS13445	0.70	+1.9
3,067,716	+		DDA3937_RS13445	0.70	+3.1
3,067,717	-				+1.9
3,067,717	-		DDA3937_RS13445	0.70	+2.9
3,067,717	-		DDA3937_RS13445	0.70	+2.1
3,067,717	-		DDA3937_RS13445	0.70	+3.1
3,067,845	-		DDA3937_RS13445	0.82	+2.0
3,067,906	-		DDA3937_RS13445	0.87	+2.6
3,067,918	+		DDA3937_RS13445	0.88	+4.9
3,067,935	-				+2.1
3,068,048	+				+4.5
3,068,048	+				+0.2
3,068,048	+				+3.1
3,068,048	+				+2.6
3,068,048	+				+2.9
3,068,048	+				+3.2
3,068,048	+				+3.1
3,068,048	+				+0.3
3,068,049	-				+0.1
3,068,049	-				+0.8
3,068,049	-				+1.9
3,068,049	-				+1.6
3,068,049	-				+2.5
3,068,049	-				+1.6
3,068,049	-				+2.7
3,068,049	-				+2.8
3,068,049	-				+1.4
3,068,049	-				+6.6
3,068,049	-				+1.6
3,068,049	-				+1.1
3,068,049	-				+1.6
3,068,063	+				+0.6
3,068,079	+				+3.2
3,068,126	+				+0.6
3,068,127	-				+0.9
3,068,127	-				+2.2
3,068,127	-				+2.0
3,068,141	+		DDA3937_RS13450	0.11	-0.4
3,068,141	+		DDA3937_RS13450	0.11	+0.9
3,068,141	+		DDA3937_RS13450	0.11	+2.1
3,068,142	-		DDA3937_RS13450	0.11	+1.5
3,068,142	-		DDA3937_RS13450	0.11	+3.0
3,068,142	-		DDA3937_RS13450	0.11	+1.1
3,068,142	-		DDA3937_RS13450	0.11	+2.0
3,068,142	-		DDA3937_RS13450	0.11	+3.7
3,068,148	+		DDA3937_RS13450	0.12	+1.6
3,068,196	+		DDA3937_RS13450	0.19	+2.6
3,068,196	+		DDA3937_RS13450	0.19	+2.7
3,068,196	+		DDA3937_RS13450	0.19	+4.1
3,068,196	+		DDA3937_RS13450	0.19	+2.4
3,068,196	+		DDA3937_RS13450	0.19	+2.2
3,068,197	-		DDA3937_RS13450	0.19	+2.9
3,068,197	-		DDA3937_RS13450	0.19	+1.9
3,068,197	-		DDA3937_RS13450	0.19	+2.2
3,068,229	+		DDA3937_RS13450	0.23	+3.1
3,068,247	+		DDA3937_RS13450	0.26	+3.3
3,068,248	-		DDA3937_RS13450	0.26	+1.8
3,068,338	-				+1.1
3,068,338	-		DDA3937_RS13450	0.38	+2.3
3,068,338	-				+1.7
3,068,539	+		DDA3937_RS13450	0.67	+1.4
3,068,540	-		DDA3937_RS13450	0.67	+1.7
3,068,582	+		DDA3937_RS13450	0.73	+1.1
3,068,582	+		DDA3937_RS13450	0.73	+2.3
3,068,582	+		DDA3937_RS13450	0.73	+2.2
3,068,582	+		DDA3937_RS13450	0.73	+3.1
3,068,582	+		DDA3937_RS13450	0.73	+3.6
3,068,582	+		DDA3937_RS13450	0.73	+1.3
3,068,582	+		DDA3937_RS13450	0.73	+2.7
3,068,582	+		DDA3937_RS13450	0.73	+1.5
3,068,582	+		DDA3937_RS13450	0.73	+3.0
3,068,583	-		DDA3937_RS13450	0.73	+1.7
3,068,583	-		DDA3937_RS13450	0.73	+2.9
3,068,583	-				+2.9
3,068,583	-		DDA3937_RS13450	0.73	+2.5
3,068,626	-		DDA3937_RS13450	0.79	+2.6
3,068,633	-		DDA3937_RS13450	0.80	+2.6
3,068,686	+		DDA3937_RS13450	0.87	+3.1
3,068,686	+		DDA3937_RS13450	0.87	+2.5
3,068,686	+		DDA3937_RS13450	0.87	-0.2
3,068,686	+		DDA3937_RS13450	0.87	+1.0
3,068,686	+		DDA3937_RS13450	0.87	+2.7
3,068,686	+		DDA3937_RS13450	0.87	+2.4
3,068,686	+		DDA3937_RS13450	0.87	+2.1
3,068,686	+		DDA3937_RS13450	0.87	+3.5
3,068,686	+		DDA3937_RS13450	0.87	+2.1
3,068,686	+		DDA3937_RS13450	0.87	+2.7
3,068,686	+		DDA3937_RS13450	0.87	+1.9
3,068,687	-		DDA3937_RS13450	0.87	+1.1
3,068,687	-		DDA3937_RS13450	0.87	+4.5
3,068,687	-		DDA3937_RS13450	0.87	+2.1
3,068,687	-		DDA3937_RS13450	0.87	+2.2
3,068,687	-		DDA3937_RS13450	0.87	+2.3
3,068,687	-		DDA3937_RS13450	0.87	+2.8
3,068,687	-		DDA3937_RS13450	0.87	+1.6
3,068,687	-		DDA3937_RS13450	0.87	+2.0
3,068,688	+		DDA3937_RS13450	0.87	+2.4
3,068,688	+		DDA3937_RS13450	0.87	+2.7
3,068,688	+		DDA3937_RS13450	0.87	-1.1
3,068,689	-		DDA3937_RS13450	0.87	+3.4
3,068,689	-		DDA3937_RS13450	0.87	+2.1
3,068,689	-		DDA3937_RS13450	0.87	+2.8
3,068,689	-		DDA3937_RS13450	0.87	+2.9
3,068,689	-		DDA3937_RS13450	0.87	+2.8
3,068,689	-		DDA3937_RS13450	0.87	+1.8
3,068,689	-		DDA3937_RS13450	0.87	+2.6
3,068,689	-		DDA3937_RS13450	0.87	+3.1
3,068,689	-		DDA3937_RS13450	0.87	+3.2
3,068,690	+		DDA3937_RS13450	0.88	+4.4
3,068,691	-		DDA3937_RS13450	0.88	+2.5
3,068,691	-		DDA3937_RS13450	0.88	+5.2
3,068,691	-		DDA3937_RS13450	0.88	+0.9
3,068,691	-		DDA3937_RS13450	0.88	+3.3
3,068,710	+				+3.7
3,068,711	-				+1.5
3,068,723	+				+2.4
3,068,723	+				+1.9
3,068,724	-				+2.5
3,068,813	+				+4.4
3,068,813	+				-2.0
3,068,814	-				+1.3
3,068,821	+				+1.5
3,068,821	+				+1.4
3,068,821	+				+4.2
3,068,821	+				+4.6
3,068,822	-				-1.5
3,068,822	-				-1.5
3,068,885	+				+1.6
3,068,885	+				+1.1
3,068,885	+				+2.3
3,068,885	+				+2.0
3,068,885	+				+2.4
3,068,886	-				-0.2
3,068,889	+				+3.0
3,068,890	-				-0.4
3,068,890	-				-0.1
3,068,890	-				+0.2