Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13400

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,058,257	-		DDA3937_RS13390	0.85	+2.7
3,058,343	-				+1.7
3,058,343	-				+3.1
3,058,412	+				+0.8
3,058,413	-				+1.9
3,058,447	-				+1.4
3,058,457	-				+0.3
3,058,496	+				+2.1
3,058,497	-				+2.5
3,058,540	+				-0.5
3,058,541	-				+2.6
3,058,544	+				+0.9
3,058,544	+				-0.3
3,058,544	+				-1.3
3,058,547	+				+0.5
3,058,563	+				+3.1
3,058,563	+				+2.4
3,058,567	+				+2.0
3,058,574	-				+5.4
3,058,577	+				+2.0
3,058,588	-				+2.8
3,058,588	-				+0.1
3,058,588	-				+2.9
3,058,598	-				+2.1
3,058,606	+				+2.8
3,058,607	-				+5.3
3,058,607	-				+2.6
3,058,607	-				+3.4
3,058,607	-				+4.6
3,058,631	-				+2.4
3,058,631	-				+3.1
3,058,631	-				+1.3
3,058,650	+		DDA3937_RS13395	0.12	+1.8
3,058,651	-		DDA3937_RS13395	0.12	+1.8
3,058,718	-		DDA3937_RS13395	0.26	+3.6
3,058,767	+		DDA3937_RS13395	0.36	+1.6
3,058,767	+		DDA3937_RS13395	0.36	-0.7
3,058,771	+		DDA3937_RS13395	0.37	+1.5
3,058,771	+		DDA3937_RS13395	0.37	+2.0
3,058,772	-		DDA3937_RS13395	0.37	+1.9
3,058,783	+		DDA3937_RS13395	0.39	+1.8
3,058,783	+		DDA3937_RS13395	0.39	+1.0
3,058,784	-		DDA3937_RS13395	0.39	+3.7
3,058,835	+				+3.1
3,058,835	+		DDA3937_RS13395	0.50	+0.6
3,058,835	+		DDA3937_RS13395	0.50	+4.7
3,058,835	+		DDA3937_RS13395	0.50	-2.5
3,058,835	+		DDA3937_RS13395	0.50	+3.7
3,058,835	+		DDA3937_RS13395	0.50	+1.9
3,058,836	-		DDA3937_RS13395	0.50	+3.2
3,058,836	-		DDA3937_RS13395	0.50	+2.6
3,058,892	+		DDA3937_RS13395	0.61	+1.6
3,058,892	+		DDA3937_RS13395	0.61	+1.0
3,058,893	-				+1.8
3,058,893	-		DDA3937_RS13395	0.62	+3.3
3,058,893	-		DDA3937_RS13395	0.62	+4.0
3,058,893	-		DDA3937_RS13395	0.62	+1.6
3,058,893	-		DDA3937_RS13395	0.62	-1.1
3,058,921	+		DDA3937_RS13395	0.67	+1.7
3,058,921	+		DDA3937_RS13395	0.67	+0.0
3,058,921	+		DDA3937_RS13395	0.67	+0.3
3,059,001	+		DDA3937_RS13395	0.84	-0.5
3,059,001	+		DDA3937_RS13395	0.84	-0.3
3,059,001	+		DDA3937_RS13395	0.84	+1.1
3,059,002	-		DDA3937_RS13395	0.84	+2.9
3,059,002	-		DDA3937_RS13395	0.84	+2.8
3,059,002	-		DDA3937_RS13395	0.84	+4.4
3,059,002	-		DDA3937_RS13395	0.84	+5.4
3,059,004	+		DDA3937_RS13395	0.84	+1.5
3,059,004	+		DDA3937_RS13395	0.84	+1.2
3,059,004	+		DDA3937_RS13395	0.84	+0.3
3,059,033	-				+2.1
3,059,033	-				+1.8
3,059,033	-				+2.4
3,059,033	-				+3.7
3,059,040	+				+3.1
3,059,041	-				+3.7
3,059,041	-				+3.3
3,059,130	-				-0.2
3,059,142	+				+2.5
3,059,149	-				+2.6
3,059,151	+				+3.6
3,059,151	+				+1.5
3,059,151	+				+3.5
3,059,152	-				+2.6
3,059,152	-				+3.4
3,059,152	-				+2.7
3,059,203	+		DDA3937_RS13400	0.12	+2.7
3,059,203	+		DDA3937_RS13400	0.12	+3.1
3,059,203	+		DDA3937_RS13400	0.12	+3.0
3,059,214	+		DDA3937_RS13400	0.13	+1.7
3,059,325	+		DDA3937_RS13400	0.24	+3.6
3,059,357	-		DDA3937_RS13400	0.27	+3.4
3,059,405	+		DDA3937_RS13400	0.31	+3.2
3,059,529	+		DDA3937_RS13400	0.44	+3.2
3,059,530	-		DDA3937_RS13400	0.44	+2.2
3,059,530	-		DDA3937_RS13400	0.44	+3.5
3,059,565	+		DDA3937_RS13400	0.47	+1.8
3,059,566	-		DDA3937_RS13400	0.47	+1.6
3,059,566	-		DDA3937_RS13400	0.47	+3.1
3,059,584	+		DDA3937_RS13400	0.49	+3.2
3,059,584	+		DDA3937_RS13400	0.49	+2.9
3,059,585	-		DDA3937_RS13400	0.49	+0.7
3,059,585	-		DDA3937_RS13400	0.49	+5.8
3,059,608	+		DDA3937_RS13400	0.51	+2.9
3,059,615	+		DDA3937_RS13400	0.52	+2.7
3,059,616	-		DDA3937_RS13400	0.52	+2.6
3,059,616	-		DDA3937_RS13400	0.52	+2.9
3,059,616	-		DDA3937_RS13400	0.52	+2.6
3,059,616	-		DDA3937_RS13400	0.52	+2.7
3,059,616	-		DDA3937_RS13400	0.52	+3.0
3,059,616	-		DDA3937_RS13400	0.52	+3.2
3,059,626	+		DDA3937_RS13400	0.53	+3.1
3,059,626	+		DDA3937_RS13400	0.53	+4.2
3,059,626	+		DDA3937_RS13400	0.53	+5.6
3,059,627	-		DDA3937_RS13400	0.53	+2.4
3,059,648	+		DDA3937_RS13400	0.55	+3.2
3,059,667	+		DDA3937_RS13400	0.57	+2.3
3,059,667	+		DDA3937_RS13400	0.57	+3.7
3,059,667	+		DDA3937_RS13400	0.57	+3.7
3,059,667	+		DDA3937_RS13400	0.57	+3.4
3,059,667	+		DDA3937_RS13400	0.57	+2.6
3,059,668	-		DDA3937_RS13400	0.57	+4.2
3,059,668	-		DDA3937_RS13400	0.57	+2.0
3,059,668	-		DDA3937_RS13400	0.57	+2.9
3,059,668	-		DDA3937_RS13400	0.57	+3.3
3,059,668	-		DDA3937_RS13400	0.57	+3.3
3,059,739	+		DDA3937_RS13400	0.64	+2.0
3,059,740	-		DDA3937_RS13400	0.64	+5.0
3,059,745	+		DDA3937_RS13400	0.65	-0.7
3,059,746	-		DDA3937_RS13400	0.65	+2.6
3,059,746	-		DDA3937_RS13400	0.65	+4.0
3,059,852	+		DDA3937_RS13400	0.75	+3.7
3,059,852	+		DDA3937_RS13400	0.75	+1.8
3,059,853	-		DDA3937_RS13400	0.75	+3.1
3,059,892	+		DDA3937_RS13400	0.79	+1.5
3,059,893	-		DDA3937_RS13400	0.79	+3.4
3,059,893	-		DDA3937_RS13400	0.79	+2.8
3,059,893	-		DDA3937_RS13400	0.79	+3.5
3,059,893	-		DDA3937_RS13400	0.79	+4.4
3,059,894	+		DDA3937_RS13400	0.79	+4.0
3,059,894	+		DDA3937_RS13400	0.79	+3.6
3,059,894	+		DDA3937_RS13400	0.79	+3.0
3,059,894	+		DDA3937_RS13400	0.79	+2.4
3,059,895	-		DDA3937_RS13400	0.80	+3.4
3,059,895	-		DDA3937_RS13400	0.80	+3.6
3,059,937	+		DDA3937_RS13400	0.84	+2.6
3,059,938	-		DDA3937_RS13400	0.84	+4.7
3,059,938	-		DDA3937_RS13400	0.84	+0.6
3,059,938	-		DDA3937_RS13400	0.84	+3.7
3,059,953	-		DDA3937_RS13400	0.85	+2.9
3,059,994	-		DDA3937_RS13400	0.89	+3.5
3,060,007	+				+4.1
3,060,007	+				+3.6
3,060,008	-				+3.6
3,060,012	+				+3.0
3,060,012	+				+2.8
3,060,013	-				+2.8
3,060,017	+				+2.5
3,060,017	+				+3.4
3,060,017	+				+6.4
3,060,017	+				+2.6
3,060,018	-				+2.9
3,060,018	-				+1.0
3,060,018	-				+2.0
3,060,018	-				+2.7
3,060,018	-				+2.2
3,060,018	-				+3.4
3,060,018	-				+0.5
3,060,028	+				+4.0
3,060,028	+				+2.3
3,060,029	-				+4.6
3,060,029	-				+1.7
3,060,160	+		DDA3937_RS13405	0.16	+4.5
3,060,160	+		DDA3937_RS13405	0.16	+2.5
3,060,160	+		DDA3937_RS13405	0.16	+4.3
3,060,160	+		DDA3937_RS13405	0.16	+3.4
3,060,161	-		DDA3937_RS13405	0.16	+3.3
3,060,208	+		DDA3937_RS13405	0.27	+3.6
3,060,209	-		DDA3937_RS13405	0.27	+2.8
3,060,257	-		DDA3937_RS13405	0.39	+3.4
3,060,288	+		DDA3937_RS13405	0.46	+3.9
3,060,288	+		DDA3937_RS13405	0.46	+3.1
3,060,289	-		DDA3937_RS13405	0.47	+2.6
3,060,289	-				+4.0
3,060,289	-		DDA3937_RS13405	0.47	+1.9
3,060,295	-		DDA3937_RS13405	0.48	+3.8
3,060,400	+		DDA3937_RS13405	0.73	+3.9
3,060,407	+		DDA3937_RS13405	0.75	+5.4
3,060,449	+		DDA3937_RS13405	0.85	+2.8
3,060,449	+		DDA3937_RS13405	0.85	+3.3
3,060,449	+		DDA3937_RS13405	0.85	+3.0
3,060,449	+		DDA3937_RS13405	0.85	+3.0
3,060,449	+		DDA3937_RS13405	0.85	+1.9
3,060,450	-		DDA3937_RS13405	0.85	+1.3
3,060,450	-		DDA3937_RS13405	0.85	+4.7
3,060,450	-		DDA3937_RS13405	0.85	+3.0
3,060,450	-		DDA3937_RS13405	0.85	+3.6
3,060,456	+		DDA3937_RS13405	0.87	+2.9
3,060,456	+		DDA3937_RS13405	0.87	+0.9
3,060,456	+		DDA3937_RS13405	0.87	+3.5
3,060,457	-		DDA3937_RS13405	0.87	+1.6
3,060,457	-		DDA3937_RS13405	0.87	+1.9
3,060,457	-		DDA3937_RS13405	0.87	+3.3
3,060,457	-		DDA3937_RS13405	0.87	+3.4
3,060,460	+		DDA3937_RS13405	0.88	+4.7
3,060,461	-		DDA3937_RS13405	0.88	+6.5
3,060,461	-		DDA3937_RS13405	0.88	+3.4
3,060,461	-		DDA3937_RS13405	0.88	+2.1
3,060,461	-		DDA3937_RS13405	0.88	+4.6
3,060,461	-		DDA3937_RS13405	0.88	+3.1
3,060,461	-		DDA3937_RS13405	0.88	+5.7
3,060,461	-		DDA3937_RS13405	0.88	+3.0
3,060,470	-				+2.4
3,060,473	-				+3.0
3,060,473	-				+2.9
3,060,475	+				+2.5
3,060,490	+				+1.1
3,060,490	+				+2.6
3,060,491	-				+3.2
3,060,491	-				+2.5
3,060,501	+				+4.2
3,060,576	+		DDA3937_RS13410	0.16	+5.3
3,060,593	+		DDA3937_RS13410	0.20	+2.2
3,060,593	+		DDA3937_RS13410	0.20	+2.2
3,060,659	+		DDA3937_RS13410	0.35	+3.0
3,060,686	+		DDA3937_RS13410	0.42	+3.1
3,060,696	+		DDA3937_RS13410	0.44	+1.1
3,060,697	-		DDA3937_RS13410	0.45	+2.7
3,060,697	-		DDA3937_RS13410	0.45	+1.9
3,060,744	+		DDA3937_RS13410	0.56	+4.1
3,060,744	+		DDA3937_RS13410	0.56	+3.0
3,060,745	-		DDA3937_RS13410	0.56	+2.3
3,060,749	+				+2.0
3,060,749	+		DDA3937_RS13410	0.57	+2.2
3,060,750	-		DDA3937_RS13410	0.57	+2.4
3,060,750	-		DDA3937_RS13410	0.57	+3.3
3,060,750	-		DDA3937_RS13410	0.57	+1.9
3,060,769	-		DDA3937_RS13410	0.62	+1.9
3,060,779	+		DDA3937_RS13410	0.64	+2.2
3,060,779	+		DDA3937_RS13410	0.64	+2.8
3,060,779	+		DDA3937_RS13410	0.64	+4.1
3,060,779	+		DDA3937_RS13410	0.64	+1.3
3,060,780	-		DDA3937_RS13410	0.65	+2.8
3,060,780	-		DDA3937_RS13410	0.65	+2.8
3,060,780	-		DDA3937_RS13410	0.65	+2.8
3,060,780	-		DDA3937_RS13410	0.65	+1.4
3,060,780	-		DDA3937_RS13410	0.65	+3.5
3,060,780	-		DDA3937_RS13410	0.65	+1.8
3,060,780	-		DDA3937_RS13410	0.65	+1.6
3,060,929	+				+0.3
3,060,930	-				+1.6
3,060,930	-				+2.3
3,060,930	-				+2.0
3,060,930	-				+2.1
3,060,973	+				+2.8
3,060,973	+				+4.2
3,060,973	+				+3.2
3,060,973	+				+2.9
3,060,973	+				+3.2
3,060,973	+				+4.3
3,060,974	-				+2.8
3,060,974	-				+1.3
3,060,974	-				+0.1
3,060,974	-				+2.0
3,060,992	+				+2.1
3,060,992	+				+2.5
3,060,993	-				+2.6
3,060,993	-				+2.6
3,060,993	-				+2.0
3,060,993	-				+2.4
3,060,993	-				+2.3