Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13390

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,056,216	+		DDA3937_RS13380	0.66	+3.9
3,056,234	-		DDA3937_RS13380	0.67	+2.6
3,056,252	+		DDA3937_RS13380	0.69	+4.2
3,056,252	+		DDA3937_RS13380	0.69	+3.9
3,056,253	-		DDA3937_RS13380	0.69	+3.5
3,056,270	+		DDA3937_RS13380	0.70	+2.9
3,056,270	+		DDA3937_RS13380	0.70	+2.0
3,056,271	-		DDA3937_RS13380	0.70	+0.6
3,056,285	+		DDA3937_RS13380	0.71	+2.5
3,056,357	+		DDA3937_RS13380	0.76	+3.7
3,056,357	+		DDA3937_RS13380	0.76	+3.0
3,056,358	-		DDA3937_RS13380	0.76	+1.3
3,056,358	-		DDA3937_RS13380	0.76	+2.2
3,056,358	-		DDA3937_RS13380	0.76	+3.5
3,056,395	-		DDA3937_RS13380	0.79	+3.0
3,056,420	+		DDA3937_RS13380	0.81	+2.3
3,056,420	+		DDA3937_RS13380	0.81	+1.4
3,056,421	-		DDA3937_RS13380	0.81	+1.8
3,056,421	-		DDA3937_RS13380	0.81	+4.2
3,056,423	+		DDA3937_RS13380	0.81	+2.4
3,056,446	+		DDA3937_RS13380	0.83	+3.2
3,056,446	+		DDA3937_RS13380	0.83	+3.7
3,056,446	+		DDA3937_RS13380	0.83	+3.4
3,056,446	+		DDA3937_RS13380	0.83	+4.7
3,056,446	+		DDA3937_RS13380	0.83	-0.2
3,056,446	+		DDA3937_RS13380	0.83	+2.9
3,056,446	+		DDA3937_RS13380	0.83	-1.7
3,056,447	-		DDA3937_RS13380	0.83	+2.0
3,056,447	-		DDA3937_RS13380	0.83	+2.3
3,056,460	+		DDA3937_RS13380	0.84	+1.0
3,056,500	-		DDA3937_RS13380	0.87	+2.8
3,056,500	-		DDA3937_RS13380	0.87	+2.7
3,056,500	-		DDA3937_RS13380	0.87	+1.1
3,056,523	-		DDA3937_RS13380	0.88	+2.8
3,056,523	-		DDA3937_RS13380	0.88	+2.8
3,056,523	-		DDA3937_RS13380	0.88	+0.7
3,056,535	+		DDA3937_RS13380	0.89	+4.1
3,056,535	+		DDA3937_RS13380	0.89	+1.8
3,056,572	+				+2.9
3,056,572	+				+3.8
3,056,658	-				+1.9
3,056,671	-				+1.5
3,056,673	-				+0.5
3,056,704	+				+3.0
3,056,704	+				+0.3
3,056,705	-				+3.7
3,056,807	-		DDA3937_RS13385	0.27	+2.4
3,056,817	+		DDA3937_RS13385	0.29	+1.8
3,056,818	-		DDA3937_RS13385	0.29	+3.9
3,056,818	-		DDA3937_RS13385	0.29	+3.2
3,056,818	-		DDA3937_RS13385	0.29	+2.0
3,056,894	+		DDA3937_RS13385	0.46	+2.8
3,056,905	+		DDA3937_RS13385	0.49	+2.8
3,056,950	-		DDA3937_RS13385	0.59	+4.0
3,056,952	+		DDA3937_RS13385	0.59	+2.6
3,056,952	+		DDA3937_RS13385	0.59	+2.7
3,056,952	+		DDA3937_RS13385	0.59	+3.6
3,056,952	+		DDA3937_RS13385	0.59	+3.4
3,057,022	+		DDA3937_RS13385	0.75	+2.8
3,057,022	+		DDA3937_RS13385	0.75	+4.3
3,057,022	+		DDA3937_RS13385	0.75	+1.4
3,057,023	-		DDA3937_RS13385	0.76	+3.8
3,057,023	-		DDA3937_RS13385	0.76	+2.3
3,057,023	-		DDA3937_RS13385	0.76	+2.6
3,057,049	+		DDA3937_RS13385	0.81	+2.7
3,057,050	-		DDA3937_RS13385	0.82	+2.9
3,057,128	+				+0.5
3,057,128	+				-0.4
3,057,129	-				+0.6
3,057,129	-				+0.3
3,057,129	-				+2.1
3,057,133	-				+2.9
3,057,133	-				+0.5
3,057,133	-				+1.7
3,057,133	-				+1.9
3,057,203	+				+3.5
3,057,204	-				+2.1
3,057,231	-				+7.2
3,057,231	-				+2.0
3,057,396	+		DDA3937_RS13390	0.20	+1.9
3,057,516	+		DDA3937_RS13390	0.29	+2.7
3,057,545	+		DDA3937_RS13390	0.31	+3.0
3,057,553	-		DDA3937_RS13390	0.32	+2.3
3,057,553	-		DDA3937_RS13390	0.32	+2.0
3,057,582	+		DDA3937_RS13390	0.34	+1.3
3,057,582	+		DDA3937_RS13390	0.34	+1.0
3,057,735	+		DDA3937_RS13390	0.45	+4.2
3,057,738	+		DDA3937_RS13390	0.46	+3.0
3,057,738	+		DDA3937_RS13390	0.46	+1.6
3,057,768	+		DDA3937_RS13390	0.48	+3.4
3,057,768	+		DDA3937_RS13390	0.48	+3.3
3,057,769	-		DDA3937_RS13390	0.48	+2.6
3,057,825	+		DDA3937_RS13390	0.52	+0.9
3,057,825	+		DDA3937_RS13390	0.52	+2.5
3,057,825	+		DDA3937_RS13390	0.52	+1.8
3,057,826	-		DDA3937_RS13390	0.52	+2.4
3,057,826	-		DDA3937_RS13390	0.52	+3.2
3,057,826	-		DDA3937_RS13390	0.52	+2.3
3,057,826	-		DDA3937_RS13390	0.52	+5.3
3,057,826	-		DDA3937_RS13390	0.52	+3.4
3,057,826	-		DDA3937_RS13390	0.52	+2.6
3,057,865	-		DDA3937_RS13390	0.55	+2.7
3,057,977	+		DDA3937_RS13390	0.64	+2.2
3,057,978	-		DDA3937_RS13390	0.64	+3.2
3,058,257	-		DDA3937_RS13390	0.85	+2.7
3,058,343	-				+1.7
3,058,343	-				+3.1
3,058,412	+				+0.8
3,058,413	-				+1.9
3,058,447	-				+1.4
3,058,457	-				+0.3
3,058,496	+				+2.1
3,058,497	-				+2.5
3,058,540	+				-0.5
3,058,541	-				+2.6
3,058,544	+				+0.9
3,058,544	+				-0.3
3,058,544	+				-1.3
3,058,547	+				+0.5
3,058,563	+				+3.1
3,058,563	+				+2.4
3,058,567	+				+2.0
3,058,574	-				+5.4
3,058,577	+				+2.0
3,058,588	-				+2.8
3,058,588	-				+0.1
3,058,588	-				+2.9
3,058,598	-				+2.1
3,058,606	+				+2.8
3,058,607	-				+5.3
3,058,607	-				+2.6
3,058,607	-				+3.4
3,058,607	-				+4.6
3,058,631	-				+2.4
3,058,631	-				+3.1
3,058,631	-				+1.3
3,058,650	+		DDA3937_RS13395	0.12	+1.8
3,058,651	-		DDA3937_RS13395	0.12	+1.8
3,058,718	-		DDA3937_RS13395	0.26	+3.6
3,058,767	+		DDA3937_RS13395	0.36	+1.6
3,058,767	+		DDA3937_RS13395	0.36	-0.7
3,058,771	+		DDA3937_RS13395	0.37	+1.5
3,058,771	+		DDA3937_RS13395	0.37	+2.0
3,058,772	-		DDA3937_RS13395	0.37	+1.9
3,058,783	+		DDA3937_RS13395	0.39	+1.8
3,058,783	+		DDA3937_RS13395	0.39	+1.0
3,058,784	-		DDA3937_RS13395	0.39	+3.7
3,058,835	+				+3.1
3,058,835	+		DDA3937_RS13395	0.50	+0.6
3,058,835	+		DDA3937_RS13395	0.50	+4.7
3,058,835	+		DDA3937_RS13395	0.50	-2.5
3,058,835	+		DDA3937_RS13395	0.50	+3.7
3,058,835	+		DDA3937_RS13395	0.50	+1.9
3,058,836	-		DDA3937_RS13395	0.50	+3.2
3,058,836	-		DDA3937_RS13395	0.50	+2.6
3,058,892	+		DDA3937_RS13395	0.61	+1.6
3,058,892	+		DDA3937_RS13395	0.61	+1.0
3,058,893	-				+1.8
3,058,893	-		DDA3937_RS13395	0.62	+3.3
3,058,893	-		DDA3937_RS13395	0.62	+4.0
3,058,893	-		DDA3937_RS13395	0.62	+1.6
3,058,893	-		DDA3937_RS13395	0.62	-1.1
3,058,921	+		DDA3937_RS13395	0.67	+1.7
3,058,921	+		DDA3937_RS13395	0.67	+0.0
3,058,921	+		DDA3937_RS13395	0.67	+0.3
3,059,001	+		DDA3937_RS13395	0.84	-0.5
3,059,001	+		DDA3937_RS13395	0.84	-0.3
3,059,001	+		DDA3937_RS13395	0.84	+1.1
3,059,002	-		DDA3937_RS13395	0.84	+2.9
3,059,002	-		DDA3937_RS13395	0.84	+2.8
3,059,002	-		DDA3937_RS13395	0.84	+4.4
3,059,002	-		DDA3937_RS13395	0.84	+5.4
3,059,004	+		DDA3937_RS13395	0.84	+1.5
3,059,004	+		DDA3937_RS13395	0.84	+1.2
3,059,004	+		DDA3937_RS13395	0.84	+0.3
3,059,033	-				+2.1
3,059,033	-				+1.8
3,059,033	-				+2.4
3,059,033	-				+3.7
3,059,040	+				+3.1
3,059,041	-				+3.7
3,059,041	-				+3.3
3,059,130	-				-0.2
3,059,142	+				+2.5
3,059,149	-				+2.6
3,059,151	+				+3.6
3,059,151	+				+1.5
3,059,151	+				+3.5
3,059,152	-				+2.6
3,059,152	-				+3.4
3,059,152	-				+2.7
3,059,203	+		DDA3937_RS13400	0.12	+2.7
3,059,203	+		DDA3937_RS13400	0.12	+3.1
3,059,203	+		DDA3937_RS13400	0.12	+3.0
3,059,214	+		DDA3937_RS13400	0.13	+1.7
3,059,325	+		DDA3937_RS13400	0.24	+3.6
3,059,357	-		DDA3937_RS13400	0.27	+3.4
3,059,405	+		DDA3937_RS13400	0.31	+3.2