Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13375

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,053,588	+				+4.2
3,053,588	+				+2.6
3,053,588	+				+2.6
3,053,588	+				+2.1
3,053,589	-				+0.5
3,053,589	-				+1.6
3,053,589	-				+4.0
3,053,589	-				+0.2
3,053,589	-				+2.7
3,053,589	-				+3.4
3,053,604	-				+2.3
3,053,623	+				+2.9
3,053,623	+				-1.3
3,053,664	-				+4.0
3,053,699	+		DDA3937_RS13370	0.11	+3.1
3,053,700	-		DDA3937_RS13370	0.11	+1.4
3,053,781	+		DDA3937_RS13370	0.19	+3.3
3,053,781	+		DDA3937_RS13370	0.19	+4.0
3,053,782	-		DDA3937_RS13370	0.19	+2.8
3,053,782	-		DDA3937_RS13370	0.19	+6.7
3,053,782	-		DDA3937_RS13370	0.19	+1.9
3,053,811	+		DDA3937_RS13370	0.22	+1.4
3,053,811	+		DDA3937_RS13370	0.22	+4.9
3,053,811	+		DDA3937_RS13370	0.22	+2.7
3,053,812	-		DDA3937_RS13370	0.22	+1.8
3,053,812	-		DDA3937_RS13370	0.22	-0.8
3,053,812	-		DDA3937_RS13370	0.22	+4.3
3,053,812	-		DDA3937_RS13370	0.22	+2.8
3,053,821	-		DDA3937_RS13370	0.23	+0.9
3,053,874	-		DDA3937_RS13370	0.29	+3.4
3,054,047	+		DDA3937_RS13370	0.46	+2.9
3,054,047	+		DDA3937_RS13370	0.46	+0.7
3,054,048	-		DDA3937_RS13370	0.46	+2.0
3,054,048	-		DDA3937_RS13370	0.46	+2.9
3,054,056	+		DDA3937_RS13370	0.47	+4.1
3,054,057	-		DDA3937_RS13370	0.47	+2.0
3,054,057	-		DDA3937_RS13370	0.47	+1.6
3,054,176	+		DDA3937_RS13370	0.59	+1.3
3,054,192	-		DDA3937_RS13370	0.61	+1.2
3,054,273	-		DDA3937_RS13370	0.69	+3.2
3,054,273	-		DDA3937_RS13370	0.69	+3.9
3,054,473	-		DDA3937_RS13370	0.89	+2.6
3,054,476	+		DDA3937_RS13370	0.89	+3.9
3,054,476	+		DDA3937_RS13370	0.89	+2.6
3,054,476	+		DDA3937_RS13370	0.89	+2.7
3,054,476	+		DDA3937_RS13370	0.89	+1.3
3,054,476	+		DDA3937_RS13370	0.89	+4.3
3,054,476	+		DDA3937_RS13370	0.89	-1.6
3,054,476	+		DDA3937_RS13370	0.89	+2.7
3,054,476	+		DDA3937_RS13370	0.89	+3.7
3,054,476	+		DDA3937_RS13370	0.89	-1.3
3,054,476	+		DDA3937_RS13370	0.89	+1.8
3,054,476	+		DDA3937_RS13370	0.89	+5.7
3,054,476	+		DDA3937_RS13370	0.89	+2.4
3,054,476	+		DDA3937_RS13370	0.89	+4.5
3,054,477	-		DDA3937_RS13370	0.89	+2.3
3,054,477	-		DDA3937_RS13370	0.89	+3.2
3,054,477	-		DDA3937_RS13370	0.89	+2.5
3,054,477	-		DDA3937_RS13370	0.89	+2.6
3,054,477	-		DDA3937_RS13370	0.89	+3.5
3,054,477	-		DDA3937_RS13370	0.89	+2.4
3,054,477	-		DDA3937_RS13370	0.89	+1.3
3,054,477	-		DDA3937_RS13370	0.89	+1.7
3,054,477	-		DDA3937_RS13370	0.89	+2.4
3,054,477	-		DDA3937_RS13370	0.89	+1.2
3,054,477	-		DDA3937_RS13370	0.89	+2.9
3,054,477	-		DDA3937_RS13370	0.89	+3.2
3,054,477	-		DDA3937_RS13370	0.89	+0.1
3,054,520	+				+3.2
3,054,520	+				+3.1
3,054,520	+				+4.6
3,054,520	+				+4.3
3,054,520	+				+3.6
3,054,521	-				+1.8
3,054,579	+				+2.3
3,054,580	-				+4.1
3,054,723	+		DDA3937_RS13375	0.21	+3.0
3,054,998	+		DDA3937_RS13375	0.58	+1.1
3,055,064	+		DDA3937_RS13375	0.67	+1.6
3,055,064	+		DDA3937_RS13375	0.67	+2.7
3,055,064	+		DDA3937_RS13375	0.67	+1.3
3,055,064	+		DDA3937_RS13375	0.67	+5.8
3,055,064	+		DDA3937_RS13375	0.67	+2.4
3,055,065	-		DDA3937_RS13375	0.67	+3.2
3,055,065	-		DDA3937_RS13375	0.67	+2.2
3,055,119	-		DDA3937_RS13375	0.74	+1.1
3,055,161	+		DDA3937_RS13375	0.80	+4.9
3,055,343	+				+3.5
3,055,343	+				+2.1
3,055,344	-				+3.1
3,055,344	-				+4.5
3,055,344	-				+0.9
3,055,364	+				+2.6
3,055,373	+				+2.6
3,055,373	+				+2.6
3,055,373	+				+2.1
3,055,373	+				+4.4
3,055,374	-				+2.5
3,055,374	-				+2.5
3,055,504	+		DDA3937_RS13380	0.14	+3.4
3,055,505	-		DDA3937_RS13380	0.14	+2.9
3,055,505	-		DDA3937_RS13380	0.14	+3.1
3,055,505	-		DDA3937_RS13380	0.14	+3.8
3,055,593	+		DDA3937_RS13380	0.21	+2.4
3,055,594	-		DDA3937_RS13380	0.21	+0.3
3,055,594	-		DDA3937_RS13380	0.21	+2.4
3,055,594	-		DDA3937_RS13380	0.21	+4.6
3,055,594	-		DDA3937_RS13380	0.21	+2.3
3,055,594	-		DDA3937_RS13380	0.21	+3.0
3,055,594	-		DDA3937_RS13380	0.21	+2.3
3,055,636	+		DDA3937_RS13380	0.24	+2.8
3,055,636	+		DDA3937_RS13380	0.24	+4.2
3,055,643	-		DDA3937_RS13380	0.24	+4.8
3,055,643	-		DDA3937_RS13380	0.24	+2.5
3,055,719	+		DDA3937_RS13380	0.30	+3.6
3,055,719	+		DDA3937_RS13380	0.30	+2.1
3,055,763	+		DDA3937_RS13380	0.33	+3.1
3,055,764	-		DDA3937_RS13380	0.33	+3.9
3,055,839	-		DDA3937_RS13380	0.39	+2.2
3,055,839	-		DDA3937_RS13380	0.39	+6.0
3,055,839	-		DDA3937_RS13380	0.39	+5.1
3,055,868	+		DDA3937_RS13380	0.41	+3.6
3,055,900	-		DDA3937_RS13380	0.43	+2.2
3,055,900	-		DDA3937_RS13380	0.43	+2.5
3,055,900	-		DDA3937_RS13380	0.43	+4.4
3,055,901	+		DDA3937_RS13380	0.43	+2.9
3,055,902	-		DDA3937_RS13380	0.43	+2.7
3,055,902	-		DDA3937_RS13380	0.43	+2.3
3,055,921	+		DDA3937_RS13380	0.44	+2.7
3,055,921	+		DDA3937_RS13380	0.44	+2.8
3,055,922	-				+2.7
3,055,973	+		DDA3937_RS13380	0.48	+3.3
3,056,045	+		DDA3937_RS13380	0.54	+2.2
3,056,061	+		DDA3937_RS13380	0.55	+3.6
3,056,062	-		DDA3937_RS13380	0.55	+3.0
3,056,062	-		DDA3937_RS13380	0.55	+2.8
3,056,062	-		DDA3937_RS13380	0.55	+3.3
3,056,062	-		DDA3937_RS13380	0.55	+3.8
3,056,066	+		DDA3937_RS13380	0.55	+4.1
3,056,066	+		DDA3937_RS13380	0.55	+3.0
3,056,107	+		DDA3937_RS13380	0.58	+3.1
3,056,107	+				+5.5
3,056,107	+		DDA3937_RS13380	0.58	+3.3
3,056,107	+		DDA3937_RS13380	0.58	+4.3
3,056,107	+		DDA3937_RS13380	0.58	+2.6
3,056,107	+		DDA3937_RS13380	0.58	+2.8
3,056,107	+		DDA3937_RS13380	0.58	+2.0
3,056,108	-		DDA3937_RS13380	0.58	+2.8
3,056,108	-		DDA3937_RS13380	0.58	+2.4
3,056,108	-		DDA3937_RS13380	0.58	-1.1
3,056,108	-		DDA3937_RS13380	0.58	+2.2
3,056,108	-		DDA3937_RS13380	0.58	+1.4
3,056,108	-		DDA3937_RS13380	0.58	+1.0
3,056,108	-		DDA3937_RS13380	0.58	+3.5
3,056,108	-		DDA3937_RS13380	0.58	+2.2
3,056,117	+		DDA3937_RS13380	0.59	+2.9
3,056,117	+		DDA3937_RS13380	0.59	+4.8
3,056,216	+		DDA3937_RS13380	0.66	+3.9
3,056,234	-		DDA3937_RS13380	0.67	+2.6
3,056,252	+		DDA3937_RS13380	0.69	+4.2
3,056,252	+		DDA3937_RS13380	0.69	+3.9
3,056,253	-		DDA3937_RS13380	0.69	+3.5
3,056,270	+		DDA3937_RS13380	0.70	+2.9
3,056,270	+		DDA3937_RS13380	0.70	+2.0
3,056,271	-		DDA3937_RS13380	0.70	+0.6
3,056,285	+		DDA3937_RS13380	0.71	+2.5