Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13370

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,052,606	-		DDA3937_RS13365	0.43	-1.0
3,052,609	+		DDA3937_RS13365	0.43	+3.1
3,052,609	+		DDA3937_RS13365	0.43	+3.4
3,052,610	-		DDA3937_RS13365	0.43	+2.1
3,052,720	+		DDA3937_RS13365	0.49	+2.7
3,052,720	+		DDA3937_RS13365	0.49	+2.9
3,052,720	+		DDA3937_RS13365	0.49	+3.3
3,052,720	+		DDA3937_RS13365	0.49	+2.8
3,052,721	-		DDA3937_RS13365	0.49	+2.9
3,052,721	-		DDA3937_RS13365	0.49	+1.9
3,052,729	-		DDA3937_RS13365	0.50	+1.1
3,052,729	-		DDA3937_RS13365	0.50	+1.9
3,052,754	+		DDA3937_RS13365	0.51	+2.8
3,052,755	-		DDA3937_RS13365	0.51	+3.3
3,052,755	-		DDA3937_RS13365	0.51	+0.8
3,052,755	-		DDA3937_RS13365	0.51	+3.6
3,052,802	+		DDA3937_RS13365	0.54	+2.0
3,052,802	+		DDA3937_RS13365	0.54	+4.2
3,052,802	+		DDA3937_RS13365	0.54	+4.1
3,052,802	+		DDA3937_RS13365	0.54	+3.3
3,052,802	+		DDA3937_RS13365	0.54	+3.5
3,052,802	+		DDA3937_RS13365	0.54	+2.6
3,052,803	-		DDA3937_RS13365	0.54	+2.7
3,052,803	-		DDA3937_RS13365	0.54	+2.5
3,052,803	-		DDA3937_RS13365	0.54	+4.8
3,052,803	-		DDA3937_RS13365	0.54	+3.0
3,052,857	+		DDA3937_RS13365	0.57	+2.9
3,052,884	+		DDA3937_RS13365	0.59	+0.3
3,052,884	+		DDA3937_RS13365	0.59	+4.7
3,052,905	+		DDA3937_RS13365	0.60	+2.9
3,052,944	+		DDA3937_RS13365	0.62	+4.4
3,052,944	+		DDA3937_RS13365	0.62	+3.0
3,052,944	+		DDA3937_RS13365	0.62	+2.3
3,052,945	-		DDA3937_RS13365	0.62	+2.8
3,052,945	-		DDA3937_RS13365	0.62	+3.4
3,052,981	+		DDA3937_RS13365	0.64	-1.6
3,052,981	+		DDA3937_RS13365	0.64	+4.0
3,052,981	+		DDA3937_RS13365	0.64	+4.5
3,052,981	+		DDA3937_RS13365	0.64	+2.2
3,052,981	+		DDA3937_RS13365	0.64	+3.0
3,052,982	-		DDA3937_RS13365	0.65	+2.7
3,053,011	+		DDA3937_RS13365	0.66	+4.2
3,053,011	+		DDA3937_RS13365	0.66	+0.7
3,053,012	-		DDA3937_RS13365	0.66	+2.3
3,053,012	-		DDA3937_RS13365	0.66	+4.3
3,053,012	-		DDA3937_RS13365	0.66	+2.6
3,053,089	-		DDA3937_RS13365	0.71	+2.0
3,053,092	+		DDA3937_RS13365	0.71	+4.1
3,053,092	+		DDA3937_RS13365	0.71	+4.4
3,053,093	-		DDA3937_RS13365	0.71	+3.1
3,053,093	-		DDA3937_RS13365	0.71	+0.2
3,053,093	-		DDA3937_RS13365	0.71	+2.4
3,053,093	-		DDA3937_RS13365	0.71	+1.2
3,053,093	-		DDA3937_RS13365	0.71	+3.9
3,053,214	+		DDA3937_RS13365	0.78	+2.7
3,053,217	+		DDA3937_RS13365	0.78	+3.5
3,053,217	+		DDA3937_RS13365	0.78	+3.5
3,053,217	+		DDA3937_RS13365	0.78	+2.9
3,053,217	+		DDA3937_RS13365	0.78	+2.8
3,053,217	+		DDA3937_RS13365	0.78	+6.1
3,053,217	+		DDA3937_RS13365	0.78	+2.8
3,053,217	+		DDA3937_RS13365	0.78	+5.2
3,053,218	-		DDA3937_RS13365	0.78	+3.6
3,053,218	-		DDA3937_RS13365	0.78	+5.1
3,053,218	-		DDA3937_RS13365	0.78	+5.9
3,053,218	-		DDA3937_RS13365	0.78	+1.0
3,053,218	-		DDA3937_RS13365	0.78	+2.9
3,053,218	-		DDA3937_RS13365	0.78	+0.9
3,053,218	-		DDA3937_RS13365	0.78	+2.4
3,053,218	-		DDA3937_RS13365	0.78	-0.5
3,053,300	+		DDA3937_RS13365	0.83	+2.7
3,053,300	+		DDA3937_RS13365	0.83	+3.9
3,053,346	+				+4.3
3,053,346	+		DDA3937_RS13365	0.86	+3.6
3,053,346	+		DDA3937_RS13365	0.86	+2.6
3,053,451	+				+2.9
3,053,451	+				+1.9
3,053,451	+				+2.8
3,053,562	-				+2.4
3,053,588	+				+4.2
3,053,588	+				+2.6
3,053,588	+				+2.6
3,053,588	+				+2.1
3,053,589	-				+0.5
3,053,589	-				+1.6
3,053,589	-				+4.0
3,053,589	-				+0.2
3,053,589	-				+2.7
3,053,589	-				+3.4
3,053,604	-				+2.3
3,053,623	+				+2.9
3,053,623	+				-1.3
3,053,664	-				+4.0
3,053,699	+		DDA3937_RS13370	0.11	+3.1
3,053,700	-		DDA3937_RS13370	0.11	+1.4
3,053,781	+		DDA3937_RS13370	0.19	+3.3
3,053,781	+		DDA3937_RS13370	0.19	+4.0
3,053,782	-		DDA3937_RS13370	0.19	+2.8
3,053,782	-		DDA3937_RS13370	0.19	+6.7
3,053,782	-		DDA3937_RS13370	0.19	+1.9
3,053,811	+		DDA3937_RS13370	0.22	+1.4
3,053,811	+		DDA3937_RS13370	0.22	+4.9
3,053,811	+		DDA3937_RS13370	0.22	+2.7
3,053,812	-		DDA3937_RS13370	0.22	+1.8
3,053,812	-		DDA3937_RS13370	0.22	-0.8
3,053,812	-		DDA3937_RS13370	0.22	+4.3
3,053,812	-		DDA3937_RS13370	0.22	+2.8
3,053,821	-		DDA3937_RS13370	0.23	+0.9
3,053,874	-		DDA3937_RS13370	0.29	+3.4
3,054,047	+		DDA3937_RS13370	0.46	+2.9
3,054,047	+		DDA3937_RS13370	0.46	+0.7
3,054,048	-		DDA3937_RS13370	0.46	+2.0
3,054,048	-		DDA3937_RS13370	0.46	+2.9
3,054,056	+		DDA3937_RS13370	0.47	+4.1
3,054,057	-		DDA3937_RS13370	0.47	+2.0
3,054,057	-		DDA3937_RS13370	0.47	+1.6
3,054,176	+		DDA3937_RS13370	0.59	+1.3
3,054,192	-		DDA3937_RS13370	0.61	+1.2
3,054,273	-		DDA3937_RS13370	0.69	+3.2
3,054,273	-		DDA3937_RS13370	0.69	+3.9
3,054,473	-		DDA3937_RS13370	0.89	+2.6
3,054,476	+		DDA3937_RS13370	0.89	+3.9
3,054,476	+		DDA3937_RS13370	0.89	+2.6
3,054,476	+		DDA3937_RS13370	0.89	+2.7
3,054,476	+		DDA3937_RS13370	0.89	+1.3
3,054,476	+		DDA3937_RS13370	0.89	+4.3
3,054,476	+		DDA3937_RS13370	0.89	-1.6
3,054,476	+		DDA3937_RS13370	0.89	+2.7
3,054,476	+		DDA3937_RS13370	0.89	+3.7
3,054,476	+		DDA3937_RS13370	0.89	-1.3
3,054,476	+		DDA3937_RS13370	0.89	+1.8
3,054,476	+		DDA3937_RS13370	0.89	+5.7
3,054,476	+		DDA3937_RS13370	0.89	+2.4
3,054,476	+		DDA3937_RS13370	0.89	+4.5
3,054,477	-		DDA3937_RS13370	0.89	+2.3
3,054,477	-		DDA3937_RS13370	0.89	+3.2
3,054,477	-		DDA3937_RS13370	0.89	+2.5
3,054,477	-		DDA3937_RS13370	0.89	+2.6
3,054,477	-		DDA3937_RS13370	0.89	+3.5
3,054,477	-		DDA3937_RS13370	0.89	+2.4
3,054,477	-		DDA3937_RS13370	0.89	+1.3
3,054,477	-		DDA3937_RS13370	0.89	+1.7
3,054,477	-		DDA3937_RS13370	0.89	+2.4
3,054,477	-		DDA3937_RS13370	0.89	+1.2
3,054,477	-		DDA3937_RS13370	0.89	+2.9
3,054,477	-		DDA3937_RS13370	0.89	+3.2
3,054,477	-		DDA3937_RS13370	0.89	+0.1
3,054,520	+				+3.2
3,054,520	+				+3.1
3,054,520	+				+4.6
3,054,520	+				+4.3
3,054,520	+				+3.6
3,054,521	-				+1.8
3,054,579	+				+2.3
3,054,580	-				+4.1
3,054,723	+		DDA3937_RS13375	0.21	+3.0
3,054,998	+		DDA3937_RS13375	0.58	+1.1
3,055,064	+		DDA3937_RS13375	0.67	+1.6
3,055,064	+		DDA3937_RS13375	0.67	+2.7
3,055,064	+		DDA3937_RS13375	0.67	+1.3
3,055,064	+		DDA3937_RS13375	0.67	+5.8
3,055,064	+		DDA3937_RS13375	0.67	+2.4
3,055,065	-		DDA3937_RS13375	0.67	+3.2
3,055,065	-		DDA3937_RS13375	0.67	+2.2
3,055,119	-		DDA3937_RS13375	0.74	+1.1
3,055,161	+		DDA3937_RS13375	0.80	+4.9
3,055,343	+				+3.5
3,055,343	+				+2.1
3,055,344	-				+3.1
3,055,344	-				+4.5
3,055,344	-				+0.9
3,055,364	+				+2.6
3,055,373	+				+2.6
3,055,373	+				+2.6
3,055,373	+				+2.1
3,055,373	+				+4.4
3,055,374	-				+2.5
3,055,374	-				+2.5
3,055,504	+		DDA3937_RS13380	0.14	+3.4
3,055,505	-		DDA3937_RS13380	0.14	+2.9
3,055,505	-		DDA3937_RS13380	0.14	+3.1
3,055,505	-		DDA3937_RS13380	0.14	+3.8