Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13305

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,035,396	+		DDA3937_RS13300	0.17	+0.5
3,035,397	-		DDA3937_RS13300	0.17	+2.0
3,035,397	-		DDA3937_RS13300	0.17	+3.4
3,035,397	-		DDA3937_RS13300	0.17	-2.6
3,035,428	+		DDA3937_RS13300	0.22	+3.7
3,035,428	+		DDA3937_RS13300	0.22	+3.8
3,035,461	+		DDA3937_RS13300	0.26	+2.9
3,035,558	+		DDA3937_RS13300	0.40	+0.9
3,035,558	+		DDA3937_RS13300	0.40	+3.6
3,035,574	+		DDA3937_RS13300	0.42	+3.1
3,035,574	+		DDA3937_RS13300	0.42	+0.9
3,035,575	-		DDA3937_RS13300	0.42	+3.7
3,035,620	-		DDA3937_RS13300	0.48	+4.1
3,035,620	-		DDA3937_RS13300	0.48	+3.3
3,035,620	-		DDA3937_RS13300	0.48	+3.8
3,035,620	-		DDA3937_RS13300	0.48	+6.0
3,035,650	-		DDA3937_RS13300	0.52	+2.7
3,035,710	-		DDA3937_RS13300	0.61	+1.1
3,035,772	+		DDA3937_RS13300	0.69	+3.2
3,035,772	+		DDA3937_RS13300	0.69	+4.1
3,035,773	-		DDA3937_RS13300	0.69	+3.4
3,035,773	-		DDA3937_RS13300	0.69	+4.6
3,035,786	+		DDA3937_RS13300	0.71	+2.6
3,035,786	+		DDA3937_RS13300	0.71	+3.3
3,035,786	+		DDA3937_RS13300	0.71	+1.9
3,035,786	+		DDA3937_RS13300	0.71	+5.4
3,035,787	-		DDA3937_RS13300	0.71	+3.9
3,035,787	-		DDA3937_RS13300	0.71	+2.7
3,035,819	+		DDA3937_RS13300	0.76	+3.7
3,035,820	-		DDA3937_RS13300	0.76	+3.3
3,035,903	+		DDA3937_RS13300	0.87	+2.1
3,035,908	+		DDA3937_RS13300	0.88	+3.0
3,035,908	+		DDA3937_RS13300	0.88	-0.4
3,035,908	+		DDA3937_RS13300	0.88	+4.0
3,035,908	+		DDA3937_RS13300	0.88	+5.0
3,035,909	-		DDA3937_RS13300	0.88	+3.7
3,035,937	-				+4.6
3,035,981	+				+3.1
3,035,981	+				+3.0
3,035,982	-				+2.9
3,035,982	-				+4.1
3,036,000	+				+4.5
3,036,001	-				+3.7
3,036,001	-				+3.1
3,036,001	-				+0.7
3,036,004	+				+2.8
3,036,004	+				+3.2
3,036,004	+				+2.3
3,036,004	+				+4.0
3,036,004	+				+4.8
3,036,005	-				+2.2
3,036,005	-				+1.4
3,036,005	-				+0.1
3,036,016	+				+3.4
3,036,035	-				+1.6
3,036,047	+				+4.1
3,036,048	-				-0.9
3,036,048	-				-0.3
3,036,048	-				-0.5
3,036,048	-				+0.2
3,036,048	-				+0.0
3,036,048	-				-0.6
3,036,067	+				+1.5
3,036,067	+				-1.4
3,036,067	+				+1.1
3,036,068	-				-0.6
3,036,068	-				+0.9
3,036,068	-				-1.9
3,036,068	-				+0.4
3,036,074	-				-0.8
3,036,121	+				+3.0
3,036,121	+				+0.2
3,036,126	+				+0.1
3,036,127	-				-1.5
3,036,127	-				+1.1
3,036,133	+				-1.1
3,036,134	-				+0.0
3,036,136	-				-0.1
3,036,140	+				-1.0
3,036,141	-				-0.8
3,036,161	+				-0.1
3,036,161	+				+0.2
3,036,161	+				-0.3
3,036,166	+				+0.5
3,036,167	-				-0.6
3,036,185	+				+1.0
3,036,186	-				+1.0
3,036,186	-				-2.3
3,036,186	-				-1.1
3,036,186	-				+0.4
3,036,186	-				-1.1
3,036,186	-				+1.2
3,036,191	+				-1.4
3,036,192	-				-1.6
3,036,201	+				-1.3
3,036,218	-				-0.3
3,036,220	+				+0.1
3,036,226	-				+1.7
3,036,228	+				-1.4
3,036,228	+				-0.9
3,036,307	+				-0.2
3,036,307	+				-0.3
3,036,308	-				+0.5
3,036,308	-				-2.1
3,036,310	+				-0.3
3,036,311	-				+0.6
3,036,316	-				-0.4
3,036,329	-				-1.2
3,036,375	+				-0.9
3,036,412	-				+0.2
3,036,595	+		DDA3937_RS13305	0.15	+0.4
3,036,595	+		DDA3937_RS13305	0.15	+1.7
3,036,596	-		DDA3937_RS13305	0.16	-0.2
3,036,619	+		DDA3937_RS13305	0.17	+0.9
3,036,620	-		DDA3937_RS13305	0.17	-0.6
3,036,620	-		DDA3937_RS13305	0.17	-0.4
3,036,620	-		DDA3937_RS13305	0.17	+0.8
3,036,751	+		DDA3937_RS13305	0.26	+2.2
3,036,752	-				+0.2
3,037,032	+		DDA3937_RS13305	0.46	-2.4
3,037,059	+		DDA3937_RS13305	0.48	-0.5
3,037,062	+		DDA3937_RS13305	0.48	+1.2
3,037,063	-		DDA3937_RS13305	0.48	-0.1
3,037,066	+		DDA3937_RS13305	0.48	+1.2
3,037,086	-		DDA3937_RS13305	0.50	+0.6
3,037,185	+		DDA3937_RS13305	0.57	+1.5
3,037,302	+		DDA3937_RS13305	0.65	+0.7
3,037,452	+		DDA3937_RS13305	0.75	-0.4
3,037,479	-		DDA3937_RS13305	0.77	-0.2
3,037,491	+		DDA3937_RS13305	0.78	+3.1
3,037,525	+		DDA3937_RS13305	0.81	+2.4
3,037,525	+		DDA3937_RS13305	0.81	+0.4
3,037,525	+		DDA3937_RS13305	0.81	-0.8
3,037,567	+		DDA3937_RS13305	0.84	-0.4
3,037,567	+		DDA3937_RS13305	0.84	-1.4
3,037,663	-				+2.8
3,037,679	-				+1.2
3,037,764	+				-1.5
3,037,764	+				+0.7
3,037,781	+				+1.7
3,037,782	-				+0.1
3,037,791	+				+0.2
3,037,802	-				-0.8
3,037,826	+				+0.9
3,037,855	+				-0.9
3,037,855	+				+0.0
3,037,855	+				+0.1
3,037,855	+				-1.8
3,037,856	-				-0.0
3,037,856	-				+1.8
3,037,856	-				+0.4
3,037,856	-				-1.6
3,037,903	+				+0.3
3,037,903	+				-0.5
3,037,904	-				+0.7
3,037,904	-				-1.5
3,037,955	+				+1.8
3,037,957	+				+2.0
3,037,958	-				-0.2
3,037,958	-				+0.6
3,037,958	-				+1.4
3,037,969	+				+1.2
3,038,001	-				+1.4
3,038,002	+				-0.4
3,038,003	-				+0.1
3,038,003	-				+1.7
3,038,003	-				-1.1
3,038,003	-				-0.7
3,038,038	+		DDA3937_RS13310	0.12	+0.6
3,038,076	-		DDA3937_RS13310	0.16	+0.4
3,038,076	-		DDA3937_RS13310	0.16	+0.6
3,038,138	+		DDA3937_RS13310	0.21	+2.2
3,038,154	+		DDA3937_RS13310	0.23	-0.8
3,038,154	+		DDA3937_RS13310	0.23	+2.4
3,038,275	+		DDA3937_RS13310	0.34	+2.5
3,038,275	+		DDA3937_RS13310	0.34	+1.6
3,038,300	+		DDA3937_RS13310	0.36	+0.9
3,038,393	+		DDA3937_RS13310	0.45	+1.0
3,038,393	+		DDA3937_RS13310	0.45	+0.5
3,038,461	+		DDA3937_RS13310	0.51	+2.8
3,038,461	+		DDA3937_RS13310	0.51	+0.6
3,038,462	-		DDA3937_RS13310	0.51	+0.4
3,038,462	-		DDA3937_RS13310	0.51	+1.2
3,038,489	+		DDA3937_RS13310	0.54	+0.2
3,038,489	+		DDA3937_RS13310	0.54	+1.1
3,038,489	+		DDA3937_RS13310	0.54	+1.8
3,038,490	-		DDA3937_RS13310	0.54	+1.0
3,038,490	-		DDA3937_RS13310	0.54	-0.6
3,038,609	-		DDA3937_RS13310	0.65	+2.3
3,038,609	-		DDA3937_RS13310	0.65	-0.2
3,038,681	-		DDA3937_RS13310	0.71	-0.5
3,038,757	+		DDA3937_RS13310	0.78	+1.6
3,038,758	-		DDA3937_RS13310	0.79	+1.1