Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS12795

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,908,324	+				+2.0
2,908,418	-		DDA3937_RS12785	0.15	-0.4
2,908,436	+		DDA3937_RS12785	0.19	-0.8
2,908,449	+		DDA3937_RS12785	0.23	-0.4
2,908,494	-		DDA3937_RS12785	0.34	+0.3
2,908,497	-		DDA3937_RS12785	0.35	-2.4
2,908,497	-		DDA3937_RS12785	0.35	-0.7
2,908,497	-		DDA3937_RS12785	0.35	-0.6
2,908,553	+		DDA3937_RS12785	0.49	-0.7
2,908,554	-		DDA3937_RS12785	0.49	+2.2
2,908,554	-		DDA3937_RS12785	0.49	-1.1
2,908,606	+		DDA3937_RS12785	0.62	-0.3
2,908,624	-		DDA3937_RS12785	0.66	-1.3
2,908,641	-		DDA3937_RS12785	0.70	-2.0
2,908,641	-		DDA3937_RS12785	0.70	-0.7
2,908,641	-		DDA3937_RS12785	0.70	-1.1
2,908,643	+		DDA3937_RS12785	0.71	-0.7
2,908,643	+		DDA3937_RS12785	0.71	-0.9
2,908,643	+		DDA3937_RS12785	0.71	+2.3
2,908,643	+		DDA3937_RS12785	0.71	+0.6
2,908,644	-		DDA3937_RS12785	0.71	-1.2
2,908,644	-		DDA3937_RS12785	0.71	+0.6
2,908,644	-		DDA3937_RS12785	0.71	-1.3
2,908,696	+		DDA3937_RS12785	0.84	-1.6
2,908,697	-		DDA3937_RS12785	0.84	-1.5
2,908,733	-				+0.4
2,908,750	+				-1.1
2,908,750	+				-0.0
2,908,765	-				-1.8
2,908,773	+				+0.6
2,908,774	-				+0.3
2,908,774	-				-1.4
2,909,005	-		DDA3937_RS12790	0.41	-1.8
2,909,171	+		DDA3937_RS12790	0.81	-0.8
2,909,172	-		DDA3937_RS12790	0.81	-0.1
2,909,229	-				-0.1
2,909,229	-				-1.7
2,909,229	-				-1.1
2,909,232	+				-1.0
2,909,232	+				+0.2
2,909,232	+				-2.4
2,909,232	+				+0.5
2,909,232	+				-0.7
2,909,233	-				+0.5
2,909,233	-				+1.0
2,909,233	-				-0.9
2,909,233	-				+0.1
2,909,305	+				+0.2
2,909,306	-				+1.3
2,909,306	-				-0.3
2,909,394	+				-2.4
2,909,394	+				-0.4
2,909,394	+				-1.6
2,909,394	+				-1.2
2,909,394	+				+0.2
2,909,394	+				+0.5
2,909,394	+				-1.4
2,909,394	+				+0.6
2,909,394	+				-0.8
2,909,394	+				-0.0
2,909,394	+				+1.2
2,909,394	+				-0.1
2,909,394	+				+0.6
2,909,395	-				-2.4
2,909,395	-				-1.6
2,909,395	-				-0.3
2,909,395	-				-0.8
2,909,395	-				-2.4
2,909,395	-				+0.2
2,909,395	-				+0.5
2,909,395	-				-1.4
2,909,395	-				+0.2
2,909,395	-				+0.5
2,909,395	-				-3.0
2,909,395	-				-1.4
2,909,395	-				+0.5
2,909,395	-				-2.8
2,909,395	-				-0.2
2,909,436	+				-0.7
2,909,436	+				+1.2
2,909,436	+				+0.2
2,909,436	+				+0.5
2,909,436	+				+0.2
2,909,437	-				-1.8
2,909,437	-				+1.8
2,909,437	-				-0.3
2,909,437	-				+0.2
2,909,467	+				-2.1
2,909,565	+				+0.8
2,909,565	+		DDA3937_RS12795	0.10	+0.2
2,909,566	-		DDA3937_RS12795	0.10	+1.8
2,909,697	+		DDA3937_RS12795	0.15	+1.6
2,909,702	+		DDA3937_RS12795	0.15	-1.0
2,909,702	+		DDA3937_RS12795	0.15	-1.8
2,909,702	+		DDA3937_RS12795	0.15	+0.1
2,909,702	+		DDA3937_RS12795	0.15	-0.7
2,909,703	-		DDA3937_RS12795	0.15	-1.3
2,909,703	-		DDA3937_RS12795	0.15	+0.6
2,909,815	+		DDA3937_RS12795	0.18	-1.0
2,909,815	+		DDA3937_RS12795	0.18	-2.1
2,909,815	+		DDA3937_RS12795	0.18	-0.5
2,909,816	-		DDA3937_RS12795	0.18	+0.5
2,909,816	-		DDA3937_RS12795	0.18	-0.5
2,909,816	-		DDA3937_RS12795	0.18	-2.6
2,909,816	-		DDA3937_RS12795	0.18	-0.9
2,909,816	-		DDA3937_RS12795	0.18	-1.4
2,909,914	-		DDA3937_RS12795	0.22	+1.0
2,909,914	-		DDA3937_RS12795	0.22	+0.7
2,909,914	-		DDA3937_RS12795	0.22	-1.5
2,909,916	+		DDA3937_RS12795	0.22	+0.2
2,910,056	+		DDA3937_RS12795	0.26	-1.4
2,910,056	+		DDA3937_RS12795	0.26	-1.4
2,910,057	-		DDA3937_RS12795	0.26	-0.5
2,910,156	+		DDA3937_RS12795	0.30	+0.2
2,910,156	+		DDA3937_RS12795	0.30	+0.1
2,910,156	+		DDA3937_RS12795	0.30	-0.1
2,910,156	+		DDA3937_RS12795	0.30	-0.7
2,910,157	-		DDA3937_RS12795	0.30	-1.2
2,910,157	-		DDA3937_RS12795	0.30	-0.4
2,910,157	-		DDA3937_RS12795	0.30	+0.5
2,910,157	-		DDA3937_RS12795	0.30	-0.3
2,910,213	+		DDA3937_RS12795	0.31	-0.4
2,910,213	+		DDA3937_RS12795	0.31	-2.0
2,910,333	+				-0.8
2,910,333	+		DDA3937_RS12795	0.35	-1.4
2,910,333	+		DDA3937_RS12795	0.35	-0.8
2,910,334	-				+0.2
2,910,334	-		DDA3937_RS12795	0.35	-0.2
2,910,358	+		DDA3937_RS12795	0.36	-2.1
2,910,359	-		DDA3937_RS12795	0.36	-0.8
2,910,359	-		DDA3937_RS12795	0.36	-0.4
2,910,502	+		DDA3937_RS12795	0.41	-1.7
2,910,597	+		DDA3937_RS12795	0.44	-0.2
2,910,633	+		DDA3937_RS12795	0.45	+0.7
2,910,633	+		DDA3937_RS12795	0.45	-0.7
2,910,633	+		DDA3937_RS12795	0.45	-0.7
2,910,634	-		DDA3937_RS12795	0.45	+0.1
2,910,634	-		DDA3937_RS12795	0.45	-0.8
2,910,759	+		DDA3937_RS12795	0.49	-1.5
2,910,759	+				+0.9
2,910,759	+		DDA3937_RS12795	0.49	+0.4
2,910,760	-		DDA3937_RS12795	0.49	-1.6
2,910,760	-		DDA3937_RS12795	0.49	-1.4
2,910,760	-		DDA3937_RS12795	0.49	-1.4
2,910,789	+		DDA3937_RS12795	0.50	-0.1
2,910,790	-		DDA3937_RS12795	0.50	-0.9
2,910,837	+		DDA3937_RS12795	0.52	+0.2
2,910,837	+		DDA3937_RS12795	0.52	-2.0
2,910,907	+		DDA3937_RS12795	0.54	+0.8
2,910,908	-		DDA3937_RS12795	0.54	+0.7
2,910,964	-		DDA3937_RS12795	0.56	-2.7
2,910,964	-		DDA3937_RS12795	0.56	-0.8
2,910,964	-		DDA3937_RS12795	0.56	-1.0
2,911,009	-		DDA3937_RS12795	0.57	-0.8
2,911,009	-		DDA3937_RS12795	0.57	-1.5
2,911,009	-		DDA3937_RS12795	0.57	+0.5
2,911,116	+		DDA3937_RS12795	0.61	-0.8
2,911,116	+		DDA3937_RS12795	0.61	-0.7
2,911,116	+		DDA3937_RS12795	0.61	+0.2
2,911,116	+		DDA3937_RS12795	0.61	-1.4
2,911,120	+		DDA3937_RS12795	0.61	+0.1
2,911,120	+		DDA3937_RS12795	0.61	-1.0
2,911,121	-		DDA3937_RS12795	0.61	+0.4
2,911,121	-		DDA3937_RS12795	0.61	+0.8
2,911,301	-		DDA3937_RS12795	0.67	-1.3
2,911,330	+		DDA3937_RS12795	0.68	-0.9
2,911,438	-		DDA3937_RS12795	0.71	-0.4
2,911,438	-		DDA3937_RS12795	0.71	-0.6
2,911,438	-		DDA3937_RS12795	0.71	-1.3
2,911,661	+		DDA3937_RS12795	0.79	-1.2
2,911,661	+		DDA3937_RS12795	0.79	-0.4
2,911,662	-		DDA3937_RS12795	0.79	-0.1
2,911,662	-		DDA3937_RS12795	0.79	-0.9
2,911,671	+		DDA3937_RS12795	0.79	+0.2
2,911,672	-		DDA3937_RS12795	0.79	-0.8
2,911,675	+		DDA3937_RS12795	0.79	-1.8
2,911,675	+		DDA3937_RS12795	0.79	-1.6
2,911,804	-		DDA3937_RS12795	0.83	+1.7
2,911,894	-		DDA3937_RS12795	0.86	-0.5
2,911,985	-		DDA3937_RS12795	0.89	-0.0
2,911,985	-		DDA3937_RS12795	0.89	-0.5
2,911,995	+		DDA3937_RS12795	0.90	+1.1
2,911,996	-		DDA3937_RS12795	0.90	-0.6
2,912,005	+		DDA3937_RS12795	0.90	-1.0
2,912,005	+		DDA3937_RS12795	0.90	-0.9
2,912,006	-				+0.9
2,912,006	-				-0.8
2,912,006	-				+1.5
2,912,006	-				-0.3
2,912,006	-				-0.8
2,912,170	-				-0.3
2,912,173	+				-0.3
2,912,173	+				+0.1
2,912,173	+				-3.3
2,912,173	+				-2.4
2,912,173	+				-1.6
2,912,173	+				-0.1
2,912,174	-				-0.6
2,912,174	-				-0.9
2,912,174	-				+0.5
2,912,174	-				+0.2
2,912,174	-				-0.5
2,912,174	-				-0.2
2,912,174	-				-0.3
2,912,312	+				-0.2
2,912,312	+				-0.0
2,912,312	+				-0.1
2,912,312	+				+0.8
2,912,312	+				+0.8
2,912,312	+				-0.3
2,912,312	+				-2.4
2,912,312	+				-0.5
2,912,312	+				-0.2
2,912,312	+				+0.7
2,912,312	+				+0.2
2,912,312	+				-0.5
2,912,313	-				+0.5
2,912,313	-				-1.4
2,912,313	-				-0.3
2,912,313	-				-0.7
2,912,313	-				-0.0
2,912,313	-				+0.1
2,912,313	-				+0.1
2,912,313	-				+0.5
2,912,313	-				-1.6
2,912,313	-				-1.9
2,912,313	-				-1.8
2,912,313	-				-1.7
2,912,350	+				+0.2
2,912,355	+				+0.4
2,912,356	-				+0.3
2,912,363	-				-0.8
2,912,365	+				-0.3
2,912,370	+				-1.6
2,912,370	+				+0.6
2,912,371	-				-0.2
2,912,492	+				-0.4
2,912,492	+				-1.8
2,912,492	+				-0.3
2,912,493	-				-1.0
2,912,630	+				+1.8
2,912,631	-				-0.4
2,912,649	-				+0.8
2,912,727	+				+1.2
2,912,797	-		DDA3937_RS12800	0.12	-0.5
2,912,826	-		DDA3937_RS12800	0.14	-1.1
2,913,106	+				+1.2
2,913,131	+		DDA3937_RS12800	0.42	-0.7
2,913,174	+		DDA3937_RS12800	0.46	-0.3
2,913,174	+		DDA3937_RS12800	0.46	-0.8
2,913,175	-		DDA3937_RS12800	0.46	-0.8
2,913,198	-		DDA3937_RS12800	0.48	+0.6