Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08645

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,951,356	-		DDA3937_RS08640	0.61	-1.3
1,951,356	-		DDA3937_RS08640	0.61	-0.8
1,951,371	-		DDA3937_RS08640	0.63	-0.0
1,951,371	-		DDA3937_RS08640	0.63	-0.5
1,951,453	+		DDA3937_RS08640	0.71	+0.2
1,951,454	-		DDA3937_RS08640	0.71	-0.1
1,951,624	-		DDA3937_RS08640	0.88	+0.5
1,951,627	+		DDA3937_RS08640	0.88	-0.0
1,951,627	+		DDA3937_RS08640	0.88	-0.5
1,951,627	+		DDA3937_RS08640	0.88	-0.4
1,951,627	+		DDA3937_RS08640	0.88	-0.2
1,951,628	-		DDA3937_RS08640	0.88	+1.5
1,951,628	-		DDA3937_RS08640	0.88	-1.0
1,951,628	-		DDA3937_RS08640	0.88	-0.0
1,951,628	-		DDA3937_RS08640	0.88	+0.2
1,951,628	-		DDA3937_RS08640	0.88	-1.3
1,951,628	-		DDA3937_RS08640	0.88	+0.3
1,951,628	-		DDA3937_RS08640	0.88	-2.0
1,951,628	-		DDA3937_RS08640	0.88	-0.1
1,951,628	-		DDA3937_RS08640	0.88	-0.0
1,951,632	+		DDA3937_RS08640	0.89	-2.0
1,951,633	-		DDA3937_RS08640	0.89	-0.3
1,951,633	-		DDA3937_RS08640	0.89	-0.9
1,951,638	-		DDA3937_RS08640	0.89	-1.8
1,951,666	-				-2.3
1,951,726	+				+0.3
1,951,727	-				-1.0
1,951,741	-				-1.1
1,951,741	-				+0.3
1,951,747	-				+0.9
1,951,823	+				-0.1
1,951,823	+				-1.0
1,951,823	+				+0.0
1,951,823	+				-0.4
1,951,823	+				+0.5
1,951,823	+				-0.1
1,951,823	+				-1.0
1,951,823	+				-1.3
1,951,824	-				-0.6
1,951,824	-				-0.7
1,951,824	-				-2.0
1,951,824	-				-0.7
1,951,825	+				-0.9
1,951,826	-				+0.3
1,951,826	-				-0.3
1,951,826	-				+0.9
1,951,826	-				+0.3
1,951,826	-				-0.7
1,951,826	-				-0.9
1,951,826	-				-1.0
1,951,828	+				+1.1
1,951,828	+				-0.7
1,951,828	+				-0.1
1,951,828	+				+0.0
1,951,828	+				-2.9
1,951,829	-				-0.4
1,951,829	-				-1.4
1,951,834	+				+0.1
1,951,895	+				+0.1
1,951,895	+				-0.5
1,951,895	+				-1.3
1,951,895	+				-0.2
1,951,895	+				+0.7
1,951,895	+				-0.1
1,951,895	+				-0.7
1,951,895	+				+0.4
1,951,895	+				+1.0
1,951,895	+				+0.9
1,951,895	+				-0.7
1,951,895	+				-0.2
1,951,895	+				-1.1
1,951,895	+				+0.6
1,951,895	+				-0.5
1,951,895	+				+0.1
1,951,896	-				-0.1
1,951,896	-				-0.4
1,951,896	-				-1.7
1,951,896	-				-0.5
1,951,896	-				-2.3
1,951,991	+				+0.4
1,952,035	-				+0.7
1,952,040	-				-0.1
1,952,040	-				-0.7
1,952,064	+				+0.1
1,952,064	+				-0.0
1,952,064	+				+0.8
1,952,064	+				-0.3
1,952,064	+				-1.3
1,952,064	+				-1.0
1,952,065	-				+0.2
1,952,065	-				-0.2
1,952,065	-				-0.5
1,952,065	-				-1.7
1,952,065	-				+1.9
1,952,106	+				+0.9
1,952,196	+				-1.3
1,952,197	-				+0.6
1,952,229	+				-0.4
1,952,243	+				-0.9
1,952,244	-				+1.6
1,952,244	-				+1.6
1,952,300	+				+0.1
1,952,488	+		DDA3937_RS08645	0.21	+2.3
1,952,489	-		DDA3937_RS08645	0.21	+1.5
1,952,489	-		DDA3937_RS08645	0.21	+0.8
1,952,497	+		DDA3937_RS08645	0.22	+1.4
1,952,497	+		DDA3937_RS08645	0.22	+1.2
1,952,497	+		DDA3937_RS08645	0.22	-0.7
1,952,497	+		DDA3937_RS08645	0.22	+2.0
1,952,498	-		DDA3937_RS08645	0.22	+0.6
1,952,498	-		DDA3937_RS08645	0.22	+1.7
1,952,498	-		DDA3937_RS08645	0.22	+1.3
1,952,539	-		DDA3937_RS08645	0.25	+1.2
1,952,539	-		DDA3937_RS08645	0.25	+0.8
1,952,539	-		DDA3937_RS08645	0.25	-1.1
1,952,577	+		DDA3937_RS08645	0.28	+1.9
1,952,577	+		DDA3937_RS08645	0.28	+2.5
1,952,578	-		DDA3937_RS08645	0.28	+2.4
1,952,695	-		DDA3937_RS08645	0.36	+2.5
1,952,838	+		DDA3937_RS08645	0.47	-0.4
1,952,995	-		DDA3937_RS08645	0.58	+0.1
1,953,154	+		DDA3937_RS08645	0.70	+1.7
1,953,155	-		DDA3937_RS08645	0.70	-0.9
1,953,155	-		DDA3937_RS08645	0.70	-2.0
1,953,155	-		DDA3937_RS08645	0.70	-2.3
1,953,155	-		DDA3937_RS08645	0.70	+1.3
1,953,155	-		DDA3937_RS08645	0.70	+0.7
1,953,181	+		DDA3937_RS08645	0.72	+0.6
1,953,182	-		DDA3937_RS08645	0.72	-0.5
1,953,182	-		DDA3937_RS08645	0.72	-0.1
1,953,202	-		DDA3937_RS08645	0.74	-0.5
1,953,339	+		DDA3937_RS08645	0.84	-1.0
1,953,340	-		DDA3937_RS08645	0.84	-2.2
1,953,559	+				+0.4
1,953,630	+				+0.7
1,953,731	+		DDA3937_RS08650	0.11	-0.1
1,953,731	+		DDA3937_RS08650	0.11	-0.4
1,953,732	-		DDA3937_RS08650	0.11	+0.1
1,953,732	-		DDA3937_RS08650	0.11	-1.7
1,953,732	-		DDA3937_RS08650	0.11	+0.1
1,953,735	+		DDA3937_RS08650	0.12	-0.1
1,953,735	+		DDA3937_RS08650	0.12	-2.3
1,953,735	+		DDA3937_RS08650	0.12	+0.1
1,953,735	+		DDA3937_RS08650	0.12	-2.0
1,953,736	-		DDA3937_RS08650	0.12	-0.4
1,953,736	-		DDA3937_RS08650	0.12	-0.9
1,953,793	-		DDA3937_RS08650	0.18	+1.0
1,953,834	+		DDA3937_RS08650	0.23	-0.2
1,953,834	+		DDA3937_RS08650	0.23	+0.0
1,953,835	-		DDA3937_RS08650	0.23	-1.1
1,953,835	-		DDA3937_RS08650	0.23	-1.2
1,953,873	+		DDA3937_RS08650	0.27	+0.7
1,953,873	+		DDA3937_RS08650	0.27	+0.0
1,953,873	+		DDA3937_RS08650	0.27	-2.1
1,953,874	-		DDA3937_RS08650	0.27	+0.4
1,953,874	-		DDA3937_RS08650	0.27	-0.4
1,953,963	+		DDA3937_RS08650	0.37	-3.5
1,953,963	+		DDA3937_RS08650	0.37	+0.4
1,953,964	-		DDA3937_RS08650	0.37	-0.2
1,953,964	-		DDA3937_RS08650	0.37	+1.2
1,954,050	+		DDA3937_RS08650	0.47	-0.8
1,954,050	+		DDA3937_RS08650	0.47	-0.6
1,954,051	-		DDA3937_RS08650	0.47	+0.9
1,954,051	-		DDA3937_RS08650	0.47	-0.5
1,954,085	+		DDA3937_RS08650	0.51	+0.3
1,954,085	+		DDA3937_RS08650	0.51	-0.4
1,954,085	+		DDA3937_RS08650	0.51	+0.1
1,954,085	+		DDA3937_RS08650	0.51	+0.0
1,954,086	-		DDA3937_RS08650	0.51	-0.1
1,954,086	-		DDA3937_RS08650	0.51	+0.8
1,954,086	-		DDA3937_RS08650	0.51	+1.3
1,954,102	+		DDA3937_RS08650	0.53	+0.4
1,954,226	+		DDA3937_RS08650	0.66	+1.0
1,954,284	+		DDA3937_RS08650	0.73	+1.4
1,954,284	+		DDA3937_RS08650	0.73	-1.2
1,954,284	+		DDA3937_RS08650	0.73	-0.1
1,954,285	-		DDA3937_RS08650	0.73	+0.0
1,954,394	+		DDA3937_RS08650	0.85	-0.9
1,954,395	-		DDA3937_RS08650	0.85	+0.2
1,954,460	+				-0.5
1,954,460	+				+0.3
1,954,460	+				-1.3
1,954,461	-				-1.3
1,954,461	-				-0.2
1,954,509	+				+0.3
1,954,510	-				-0.5
1,954,520	-				-0.3
1,954,520	-				-0.3
1,954,520	-				+0.7
1,954,549	+				+0.7
1,954,549	+				-1.3
1,954,549	+				+0.6
1,954,550	-				-0.5
1,954,550	-				-0.5
1,954,550	-				-1.5
1,954,550	-				-1.6
1,954,550	-				-2.9