Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07825

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS07820 and DDA3937_RS07825 are separated by 103 nucleotidesDDA3937_RS07825 and DDA3937_RS07830 are separated by 32 nucleotidesDDA3937_RS07830 and DDA3937_RS07835 overlap by 1 nucleotides DDA3937_RS07820: DDA3937_RS07820 - fumarylacetoacetate hydrolase family protein, at 1,766,509 to 1,767,393 _RS07820 DDA3937_RS07825: DDA3937_RS07825 - [citrate (pro-3S)-lyase] ligase, at 1,767,497 to 1,768,540 _RS07825 DDA3937_RS07830: DDA3937_RS07830 - citrate lyase acyl carrier protein, at 1,768,573 to 1,768,863 _RS07830 DDA3937_RS07835: DDA3937_RS07835 - citrate (pro-3S)-lyase subunit beta, at 1,768,863 to 1,769,753 _RS07835 Position (kb) 1767 1768 1769Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1767.441 kb on + strandat 1767.441 kb on + strandat 1767.441 kb on + strandat 1767.441 kb on + strandat 1767.441 kb on + strandat 1767.442 kb on - strandat 1767.442 kb on - strandat 1767.444 kb on + strandat 1767.444 kb on + strandat 1767.444 kb on + strandat 1767.444 kb on + strandat 1767.444 kb on + strandat 1767.445 kb on - strandat 1767.461 kb on - strandat 1767.461 kb on - strandat 1767.473 kb on - strandat 1767.676 kb on + strand, within DDA3937_RS07825at 1767.676 kb on + strand, within DDA3937_RS07825at 1767.992 kb on + strand, within DDA3937_RS07825at 1768.317 kb on - strand, within DDA3937_RS07825at 1768.317 kb on - strand, within DDA3937_RS07825at 1768.317 kb on - strand, within DDA3937_RS07825at 1769.350 kb on - strand, within DDA3937_RS07835at 1769.398 kb on - strand, within DDA3937_RS07835

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,767,441 + -0.8
1,767,441 + -0.1
1,767,441 + +0.0
1,767,441 + +0.7
1,767,441 + -0.5
1,767,442 - -1.1
1,767,442 - -0.3
1,767,444 + +2.5
1,767,444 + -0.1
1,767,444 + -2.8
1,767,444 + -0.8
1,767,444 + -0.2
1,767,445 - +1.0
1,767,461 - -1.0
1,767,461 - -2.0
1,767,473 - +0.9
1,767,676 + DDA3937_RS07825 0.17 -1.0
1,767,676 + DDA3937_RS07825 0.17 -2.3
1,767,992 + DDA3937_RS07825 0.47 -0.4
1,768,317 - DDA3937_RS07825 0.79 -1.1
1,768,317 - DDA3937_RS07825 0.79 -1.0
1,768,317 - DDA3937_RS07825 0.79 +0.1
1,769,350 - DDA3937_RS07835 0.55 +0.3
1,769,398 - DDA3937_RS07835 0.60 +1.3

Or see this region's nucleotide sequence