Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06930

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06925 and DDA3937_RS06930 overlap by 4 nucleotidesDDA3937_RS06930 and DDA3937_RS06935 overlap by 14 nucleotides DDA3937_RS06925: DDA3937_RS06925 - ABC transporter ATP-binding protein, at 1,549,443 to 1,550,462 _RS06925 DDA3937_RS06930: DDA3937_RS06930 - ATP-binding cassette domain-containing protein, at 1,550,459 to 1,551,550 _RS06930 DDA3937_RS06935: DDA3937_RS06935 - ABC transporter substrate-binding protein, at 1,551,537 to 1,553,051 _RS06935 Position (kb) 1550 1551 1552Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1549.460 kb on - strandat 1549.477 kb on + strandat 1549.478 kb on - strandat 1549.478 kb on - strandat 1549.478 kb on - strandat 1549.495 kb on + strandat 1549.496 kb on - strandat 1549.920 kb on + strand, within DDA3937_RS06925at 1549.921 kb on - strand, within DDA3937_RS06925at 1550.154 kb on + strand, within DDA3937_RS06925at 1550.154 kb on + strand, within DDA3937_RS06925at 1550.155 kb on - strand, within DDA3937_RS06925at 1550.217 kb on + strand, within DDA3937_RS06925at 1550.217 kb on + strand, within DDA3937_RS06925at 1550.218 kb on - strand, within DDA3937_RS06925at 1550.218 kb on - strand, within DDA3937_RS06925at 1550.218 kb on - strand, within DDA3937_RS06925at 1550.218 kb on - strand, within DDA3937_RS06925at 1550.218 kb on - strand, within DDA3937_RS06925at 1550.218 kb on - strand, within DDA3937_RS06925at 1550.218 kb on - strand, within DDA3937_RS06925at 1550.218 kb on - strand, within DDA3937_RS06925at 1550.219 kb on + strand, within DDA3937_RS06925at 1550.220 kb on - strand, within DDA3937_RS06925at 1550.626 kb on + strand, within DDA3937_RS06930at 1550.627 kb on - strand, within DDA3937_RS06930at 1550.667 kb on + strand, within DDA3937_RS06930at 1550.668 kb on - strand, within DDA3937_RS06930at 1550.728 kb on - strand, within DDA3937_RS06930at 1550.728 kb on - strand, within DDA3937_RS06930at 1550.728 kb on - strand, within DDA3937_RS06930at 1550.823 kb on + strand, within DDA3937_RS06930at 1550.823 kb on + strand, within DDA3937_RS06930at 1550.824 kb on - strand, within DDA3937_RS06930at 1550.833 kb on + strand, within DDA3937_RS06930at 1550.834 kb on - strand, within DDA3937_RS06930at 1551.046 kb on + strand, within DDA3937_RS06930at 1551.152 kb on + strand, within DDA3937_RS06930at 1551.152 kb on + strand, within DDA3937_RS06930at 1551.152 kb on + strand, within DDA3937_RS06930at 1551.152 kb on + strand, within DDA3937_RS06930at 1551.153 kb on - strand, within DDA3937_RS06930at 1551.215 kb on + strand, within DDA3937_RS06930at 1551.215 kb on + strand, within DDA3937_RS06930at 1551.216 kb on - strand, within DDA3937_RS06930at 1551.216 kb on - strand, within DDA3937_RS06930at 1551.216 kb on - strand, within DDA3937_RS06930at 1551.384 kb on + strand, within DDA3937_RS06930at 1551.385 kb on - strand, within DDA3937_RS06930at 1551.385 kb on - strand, within DDA3937_RS06930at 1551.385 kb on - strand, within DDA3937_RS06930at 1551.385 kb on - strand, within DDA3937_RS06930at 1551.385 kb on - strand, within DDA3937_RS06930at 1551.470 kb on - strandat 1551.470 kb on - strandat 1551.516 kb on + strandat 1551.547 kb on - strandat 1551.668 kb on + strandat 1551.669 kb on - strandat 1551.709 kb on + strand, within DDA3937_RS06935at 1551.710 kb on - strand, within DDA3937_RS06935at 1551.710 kb on - strand, within DDA3937_RS06935at 1551.801 kb on + strand, within DDA3937_RS06935at 1551.801 kb on + strand, within DDA3937_RS06935at 1551.801 kb on + strand, within DDA3937_RS06935at 1551.801 kb on + strand, within DDA3937_RS06935at 1551.802 kb on - strand, within DDA3937_RS06935at 1551.802 kb on - strand, within DDA3937_RS06935at 1551.866 kb on - strand, within DDA3937_RS06935at 1551.918 kb on + strand, within DDA3937_RS06935at 1551.918 kb on + strand, within DDA3937_RS06935at 1551.919 kb on - strand, within DDA3937_RS06935at 1551.919 kb on - strand, within DDA3937_RS06935at 1551.919 kb on - strand, within DDA3937_RS06935at 1551.956 kb on + strand, within DDA3937_RS06935at 1551.956 kb on + strand, within DDA3937_RS06935at 1552.155 kb on + strand, within DDA3937_RS06935at 1552.155 kb on + strand, within DDA3937_RS06935at 1552.156 kb on - strand, within DDA3937_RS06935at 1552.217 kb on + strand, within DDA3937_RS06935at 1552.218 kb on - strand, within DDA3937_RS06935at 1552.223 kb on + strand, within DDA3937_RS06935at 1552.223 kb on + strand, within DDA3937_RS06935at 1552.286 kb on - strand, within DDA3937_RS06935at 1552.384 kb on + strand, within DDA3937_RS06935at 1552.384 kb on + strand, within DDA3937_RS06935at 1552.385 kb on - strand, within DDA3937_RS06935at 1552.407 kb on + strand, within DDA3937_RS06935at 1552.407 kb on + strandat 1552.448 kb on + strand, within DDA3937_RS06935at 1552.448 kb on + strand, within DDA3937_RS06935at 1552.448 kb on + strand, within DDA3937_RS06935at 1552.449 kb on - strand, within DDA3937_RS06935at 1552.452 kb on + strand, within DDA3937_RS06935at 1552.452 kb on + strand, within DDA3937_RS06935at 1552.453 kb on - strand, within DDA3937_RS06935at 1552.453 kb on - strand, within DDA3937_RS06935at 1552.473 kb on + strand, within DDA3937_RS06935at 1552.474 kb on - strand, within DDA3937_RS06935at 1552.494 kb on + strand, within DDA3937_RS06935at 1552.495 kb on - strand, within DDA3937_RS06935at 1552.498 kb on - strand, within DDA3937_RS06935at 1552.500 kb on + strand, within DDA3937_RS06935at 1552.500 kb on + strand, within DDA3937_RS06935at 1552.501 kb on - strand, within DDA3937_RS06935at 1552.501 kb on - strand, within DDA3937_RS06935at 1552.524 kb on + strand, within DDA3937_RS06935at 1552.524 kb on + strand, within DDA3937_RS06935

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,549,460 - -0.1
1,549,477 + -1.2
1,549,478 - +0.1
1,549,478 - -0.5
1,549,478 - +0.8
1,549,495 + +0.6
1,549,496 - -0.1
1,549,920 + DDA3937_RS06925 0.47 -1.2
1,549,921 - DDA3937_RS06925 0.47 -0.9
1,550,154 + DDA3937_RS06925 0.70 -0.3
1,550,154 + DDA3937_RS06925 0.70 +0.9
1,550,155 - DDA3937_RS06925 0.70 +0.6
1,550,217 + DDA3937_RS06925 0.76 -0.1
1,550,217 + DDA3937_RS06925 0.76 -0.6
1,550,218 - DDA3937_RS06925 0.76 -1.6
1,550,218 - DDA3937_RS06925 0.76 -0.0
1,550,218 - DDA3937_RS06925 0.76 -1.5
1,550,218 - DDA3937_RS06925 0.76 +0.4
1,550,218 - DDA3937_RS06925 0.76 -1.9
1,550,218 - DDA3937_RS06925 0.76 -1.6
1,550,218 - DDA3937_RS06925 0.76 -0.1
1,550,218 - DDA3937_RS06925 0.76 -2.2
1,550,219 + DDA3937_RS06925 0.76 +0.3
1,550,220 - DDA3937_RS06925 0.76 -1.0
1,550,626 + DDA3937_RS06930 0.15 -0.0
1,550,627 - DDA3937_RS06930 0.15 -2.8
1,550,667 + DDA3937_RS06930 0.19 -0.5
1,550,668 - DDA3937_RS06930 0.19 +1.3
1,550,728 - DDA3937_RS06930 0.25 +0.8
1,550,728 - DDA3937_RS06930 0.25 -0.4
1,550,728 - DDA3937_RS06930 0.25 +0.6
1,550,823 + DDA3937_RS06930 0.33 +0.1
1,550,823 + DDA3937_RS06930 0.33 +0.4
1,550,824 - DDA3937_RS06930 0.33 +0.5
1,550,833 + DDA3937_RS06930 0.34 +0.2
1,550,834 - DDA3937_RS06930 0.34 +0.3
1,551,046 + DDA3937_RS06930 0.54 -0.9
1,551,152 + DDA3937_RS06930 0.63 +0.6
1,551,152 + DDA3937_RS06930 0.63 -0.2
1,551,152 + DDA3937_RS06930 0.63 -0.5
1,551,152 + DDA3937_RS06930 0.63 +0.7
1,551,153 - DDA3937_RS06930 0.64 -1.3
1,551,215 + DDA3937_RS06930 0.69 +0.0
1,551,215 + DDA3937_RS06930 0.69 -0.3
1,551,216 - DDA3937_RS06930 0.69 +1.5
1,551,216 - DDA3937_RS06930 0.69 -0.5
1,551,216 - DDA3937_RS06930 0.69 -0.4
1,551,384 + DDA3937_RS06930 0.85 +0.1
1,551,385 - DDA3937_RS06930 0.85 -0.4
1,551,385 - DDA3937_RS06930 0.85 +0.9
1,551,385 - DDA3937_RS06930 0.85 -0.9
1,551,385 - DDA3937_RS06930 0.85 +0.9
1,551,385 - DDA3937_RS06930 0.85 +0.2
1,551,470 - +1.4
1,551,470 - -0.6
1,551,516 + +0.2
1,551,547 - -1.0
1,551,668 + -1.9
1,551,669 - -1.6
1,551,709 + DDA3937_RS06935 0.11 +1.1
1,551,710 - DDA3937_RS06935 0.11 +0.2
1,551,710 - DDA3937_RS06935 0.11 -0.3
1,551,801 + DDA3937_RS06935 0.17 -0.3
1,551,801 + DDA3937_RS06935 0.17 +0.7
1,551,801 + DDA3937_RS06935 0.17 +0.7
1,551,801 + DDA3937_RS06935 0.17 +0.1
1,551,802 - DDA3937_RS06935 0.17 -0.3
1,551,802 - DDA3937_RS06935 0.17 -1.4
1,551,866 - DDA3937_RS06935 0.22 -1.2
1,551,918 + DDA3937_RS06935 0.25 +0.4
1,551,918 + DDA3937_RS06935 0.25 -1.6
1,551,919 - DDA3937_RS06935 0.25 +0.2
1,551,919 - DDA3937_RS06935 0.25 +0.1
1,551,919 - DDA3937_RS06935 0.25 -0.6
1,551,956 + DDA3937_RS06935 0.28 -1.0
1,551,956 + DDA3937_RS06935 0.28 +1.1
1,552,155 + DDA3937_RS06935 0.41 +0.2
1,552,155 + DDA3937_RS06935 0.41 +0.3
1,552,156 - DDA3937_RS06935 0.41 +0.1
1,552,217 + DDA3937_RS06935 0.45 +0.7
1,552,218 - DDA3937_RS06935 0.45 -0.3
1,552,223 + DDA3937_RS06935 0.45 +0.2
1,552,223 + DDA3937_RS06935 0.45 +2.1
1,552,286 - DDA3937_RS06935 0.49 -0.6
1,552,384 + DDA3937_RS06935 0.56 +0.4
1,552,384 + DDA3937_RS06935 0.56 +0.1
1,552,385 - DDA3937_RS06935 0.56 +2.7
1,552,407 + DDA3937_RS06935 0.57 -0.1
1,552,407 + +0.4
1,552,448 + DDA3937_RS06935 0.60 -1.7
1,552,448 + DDA3937_RS06935 0.60 +0.9
1,552,448 + DDA3937_RS06935 0.60 -0.6
1,552,449 - DDA3937_RS06935 0.60 -0.3
1,552,452 + DDA3937_RS06935 0.60 -1.0
1,552,452 + DDA3937_RS06935 0.60 +0.6
1,552,453 - DDA3937_RS06935 0.60 +0.3
1,552,453 - DDA3937_RS06935 0.60 +2.3
1,552,473 + DDA3937_RS06935 0.62 +0.1
1,552,474 - DDA3937_RS06935 0.62 +0.4
1,552,494 + DDA3937_RS06935 0.63 -0.8
1,552,495 - DDA3937_RS06935 0.63 -0.5
1,552,498 - DDA3937_RS06935 0.63 -0.6
1,552,500 + DDA3937_RS06935 0.64 -0.1
1,552,500 + DDA3937_RS06935 0.64 +0.4
1,552,501 - DDA3937_RS06935 0.64 -0.1
1,552,501 - DDA3937_RS06935 0.64 -3.1
1,552,524 + DDA3937_RS06935 0.65 -0.1
1,552,524 + DDA3937_RS06935 0.65 +0.7

Or see this region's nucleotide sequence