Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05610

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05595 and DDA3937_RS05600 are separated by 16 nucleotidesDDA3937_RS05600 and DDA3937_RS05605 overlap by 1 nucleotidesDDA3937_RS05605 and DDA3937_RS05610 overlap by 11 nucleotidesDDA3937_RS05610 and DDA3937_RS05615 are separated by 20 nucleotides DDA3937_RS05595: DDA3937_RS05595 - protoheme IX farnesyltransferase, at 1,249,533 to 1,250,423 _RS05595 DDA3937_RS05600: DDA3937_RS05600 - cytochrome o ubiquinol oxidase subunit IV, at 1,250,440 to 1,250,772 _RS05600 DDA3937_RS05605: DDA3937_RS05605 - cytochrome o ubiquinol oxidase subunit III, at 1,250,772 to 1,251,386 _RS05605 DDA3937_RS05610: DDA3937_RS05610 - cytochrome o ubiquinol oxidase subunit I, at 1,251,376 to 1,253,367 _RS05610 DDA3937_RS05615: DDA3937_RS05615 - cytochrome o ubiquinol oxidase subunit II, at 1,253,388 to 1,254,338 _RS05615 Position (kb) 1251 1252 1253 1254Strain fitness (log2 ratio) -2 -1 0 1 2at 1250.418 kb on - strandat 1250.418 kb on - strandat 1251.108 kb on - strand, within DDA3937_RS05605at 1251.458 kb on + strandat 1251.458 kb on + strandat 1251.462 kb on - strandat 1251.462 kb on - strandat 1251.954 kb on - strand, within DDA3937_RS05610at 1251.964 kb on - strand, within DDA3937_RS05610at 1252.142 kb on - strand, within DDA3937_RS05610at 1252.428 kb on + strand, within DDA3937_RS05610at 1252.545 kb on - strand, within DDA3937_RS05610at 1252.657 kb on + strand, within DDA3937_RS05610at 1252.807 kb on + strand, within DDA3937_RS05610at 1253.186 kb on + strandat 1253.543 kb on - strandat 1253.601 kb on - strand, within DDA3937_RS05615at 1253.774 kb on + strand, within DDA3937_RS05615at 1253.844 kb on - strand, within DDA3937_RS05615at 1254.159 kb on - strand, within DDA3937_RS05615at 1254.353 kb on + strandat 1254.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,250,418 - -1.5
1,250,418 - -1.4
1,251,108 - DDA3937_RS05605 0.55 -1.7
1,251,458 + +1.2
1,251,458 + -1.4
1,251,462 - -1.2
1,251,462 - -1.2
1,251,954 - DDA3937_RS05610 0.29 +1.0
1,251,964 - DDA3937_RS05610 0.30 +0.4
1,252,142 - DDA3937_RS05610 0.38 +2.0
1,252,428 + DDA3937_RS05610 0.53 +0.1
1,252,545 - DDA3937_RS05610 0.59 -1.7
1,252,657 + DDA3937_RS05610 0.64 -1.1
1,252,807 + DDA3937_RS05610 0.72 -1.2
1,253,186 + -1.2
1,253,543 - -1.7
1,253,601 - DDA3937_RS05615 0.22 -0.4
1,253,774 + DDA3937_RS05615 0.41 +1.8
1,253,844 - DDA3937_RS05615 0.48 +0.5
1,254,159 - DDA3937_RS05615 0.81 -1.7
1,254,353 + -2.0
1,254,364 + -0.4

Or see this region's nucleotide sequence