Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05320

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,184,428	+		DDA3937_RS05310	0.32	+0.4
1,184,429	-		DDA3937_RS05310	0.32	+0.9
1,184,448	-		DDA3937_RS05310	0.34	-1.0
1,184,658	+		DDA3937_RS05310	0.63	-0.6
1,184,658	+		DDA3937_RS05310	0.63	+1.0
1,184,659	-		DDA3937_RS05310	0.63	-0.5
1,184,659	-		DDA3937_RS05310	0.63	-2.7
1,184,659	-		DDA3937_RS05310	0.63	-0.4
1,184,659	-				-1.4
1,184,659	-		DDA3937_RS05310	0.63	-1.4
1,184,690	-		DDA3937_RS05310	0.68	+1.4
1,184,715	+		DDA3937_RS05310	0.71	-2.7
1,184,715	+		DDA3937_RS05310	0.71	-2.4
1,184,715	+		DDA3937_RS05310	0.71	+0.6
1,184,716	-		DDA3937_RS05310	0.71	-0.1
1,184,716	-		DDA3937_RS05310	0.71	-0.6
1,184,716	-		DDA3937_RS05310	0.71	+0.2
1,184,727	-		DDA3937_RS05310	0.73	-0.2
1,184,800	+		DDA3937_RS05310	0.83	+0.6
1,184,800	+		DDA3937_RS05310	0.83	-0.2
1,184,817	-		DDA3937_RS05310	0.85	+0.1
1,184,817	-		DDA3937_RS05310	0.85	-0.0
1,184,849	+		DDA3937_RS05310	0.90	+1.4
1,184,893	+				-0.5
1,184,914	+				+0.0
1,184,914	+				+0.5
1,184,915	-				+0.7
1,184,915	-				-0.1
1,184,915	-				-0.1
1,184,915	-				-1.0
1,184,915	-				-1.6
1,184,918	+				+0.4
1,184,918	+				+0.5
1,184,918	+				+1.6
1,184,918	+				+0.3
1,184,918	+				-2.0
1,184,918	+				+0.1
1,184,918	+				-0.7
1,184,919	-				-1.2
1,184,919	-				-0.1
1,184,919	-				+0.5
1,184,919	-				+0.7
1,184,919	-				-1.4
1,184,919	-				-0.2
1,184,919	-				-1.3
1,185,021	-				+0.6
1,185,021	-		DDA3937_RS05315	0.22	-0.3
1,185,023	+		DDA3937_RS05315	0.22	+0.3
1,185,023	+		DDA3937_RS05315	0.22	-0.1
1,185,023	+		DDA3937_RS05315	0.22	-1.7
1,185,023	+		DDA3937_RS05315	0.22	-1.5
1,185,024	-		DDA3937_RS05315	0.23	-1.4
1,185,024	-		DDA3937_RS05315	0.23	-0.5
1,185,024	-		DDA3937_RS05315	0.23	+0.7
1,185,024	-		DDA3937_RS05315	0.23	-1.4
1,185,072	+		DDA3937_RS05315	0.34	+0.9
1,185,073	-		DDA3937_RS05315	0.34	-0.2
1,185,076	-		DDA3937_RS05315	0.35	+0.2
1,185,116	+		DDA3937_RS05315	0.45	-2.0
1,185,117	-		DDA3937_RS05315	0.45	-1.1
1,185,117	-		DDA3937_RS05315	0.45	-2.0
1,185,185	+		DDA3937_RS05315	0.61	+0.4
1,185,215	+		DDA3937_RS05315	0.68	+0.6
1,185,215	+		DDA3937_RS05315	0.68	-0.4
1,185,239	+		DDA3937_RS05315	0.74	+0.0
1,185,317	+				-0.2
1,185,318	-				-0.7
1,185,334	+				-0.7
1,185,334	+				+1.2
1,185,334	+				-0.4
1,185,334	+				+0.1
1,185,334	+				-0.1
1,185,335	-				+0.1
1,185,335	-				+1.1
1,185,337	+				-0.2
1,185,337	+				-0.9
1,185,337	+				-0.7
1,185,337	+				-0.2
1,185,337	+				-0.4
1,185,337	+				-1.0
1,185,337	+				-1.0
1,185,338	-				+0.4
1,185,338	-				-0.6
1,185,338	-				+0.9
1,185,338	-				+0.8
1,185,338	-				+0.3
1,185,338	-				-1.7
1,185,338	-				-1.6
1,185,338	-				+1.0
1,185,353	-				-1.0
1,185,353	-				+3.0
1,185,353	-				-0.7
1,185,353	-				+0.4
1,185,370	+				+1.3
1,185,506	+		DDA3937_RS05320	0.28	-1.2
1,185,506	+		DDA3937_RS05320	0.28	-1.0
1,185,507	-		DDA3937_RS05320	0.28	+4.3
1,185,508	+		DDA3937_RS05320	0.28	+0.1
1,185,508	+		DDA3937_RS05320	0.28	+0.8
1,185,508	+		DDA3937_RS05320	0.28	+0.1
1,185,509	-		DDA3937_RS05320	0.29	+2.6
1,185,509	-		DDA3937_RS05320	0.29	+3.8
1,185,697	+		DDA3937_RS05320	0.63	-0.1
1,185,697	+		DDA3937_RS05320	0.63	+0.2
1,185,698	-		DDA3937_RS05320	0.63	+4.3
1,185,698	-		DDA3937_RS05320	0.63	+4.7
1,185,838	+		DDA3937_RS05320	0.88	-0.7
1,185,838	+		DDA3937_RS05320	0.88	-1.0
1,185,838	+		DDA3937_RS05320	0.88	-0.9
1,185,838	+		DDA3937_RS05320	0.88	+0.5
1,185,838	+		DDA3937_RS05320	0.88	-1.0
1,185,839	-		DDA3937_RS05320	0.88	+3.5
1,185,839	-		DDA3937_RS05320	0.88	+2.5
1,185,839	-		DDA3937_RS05320	0.88	+0.0
1,185,841	+		DDA3937_RS05320	0.89	-0.1
1,185,841	+		DDA3937_RS05320	0.89	-0.1
1,185,841	+		DDA3937_RS05320	0.89	+1.2
1,185,842	-		DDA3937_RS05320	0.89	+4.7
1,185,886	+				+1.6
1,185,887	-				+1.4
1,185,887	-				+2.6
1,185,887	-				+0.1
1,185,914	-				-0.4
1,185,956	+				+0.8
1,185,957	-				+0.4
1,185,957	-				+0.6
1,186,005	+				+0.8
1,186,005	+				-0.4
1,186,006	-				+0.4
1,186,006	-				+1.2
1,186,006	-				-0.9
1,186,006	-				-0.7
1,186,008	+				+1.0
1,186,008	+				-0.1
1,186,008	+				-1.9
1,186,009	-				+0.3
1,186,009	-				+1.0
1,186,035	+				-0.7
1,186,035	+				+0.6
1,186,189	+		DDA3937_RS05325	0.21	+0.6
1,186,189	+		DDA3937_RS05325	0.21	-0.7
1,186,190	-		DDA3937_RS05325	0.21	+2.4
1,186,190	-		DDA3937_RS05325	0.21	-0.3
1,186,190	-		DDA3937_RS05325	0.21	-0.2
1,186,202	+		DDA3937_RS05325	0.22	+0.0
1,186,202	+		DDA3937_RS05325	0.22	-0.9
1,186,202	+		DDA3937_RS05325	0.22	+0.6
1,186,203	-		DDA3937_RS05325	0.22	-1.0
1,186,203	-		DDA3937_RS05325	0.22	-1.3
1,186,203	-		DDA3937_RS05325	0.22	-0.6
1,186,203	-		DDA3937_RS05325	0.22	-0.6
1,186,203	-		DDA3937_RS05325	0.22	-0.8
1,186,205	-		DDA3937_RS05325	0.22	-0.4
1,186,205	-		DDA3937_RS05325	0.22	-0.5
1,186,205	-		DDA3937_RS05325	0.22	+0.4
1,186,266	-		DDA3937_RS05325	0.27	-0.6
1,186,266	-		DDA3937_RS05325	0.27	-0.6
1,186,266	-		DDA3937_RS05325	0.27	+2.7
1,186,321	+		DDA3937_RS05325	0.32	-0.1
1,186,372	+		DDA3937_RS05325	0.36	-2.2
1,186,373	-		DDA3937_RS05325	0.36	+0.4
1,186,403	+		DDA3937_RS05325	0.38	+0.2
1,186,403	+		DDA3937_RS05325	0.38	-0.3
1,186,404	-		DDA3937_RS05325	0.38	-1.0
1,186,404	-		DDA3937_RS05325	0.38	-0.4
1,186,405	+		DDA3937_RS05325	0.38	+0.6
1,186,405	+		DDA3937_RS05325	0.38	+0.9
1,186,405	+		DDA3937_RS05325	0.38	-0.6
1,186,406	-		DDA3937_RS05325	0.39	-0.5
1,186,573	+		DDA3937_RS05325	0.52	+0.0
1,186,574	-		DDA3937_RS05325	0.52	-1.4
1,186,574	-		DDA3937_RS05325	0.52	-0.0
1,186,574	-		DDA3937_RS05325	0.52	+0.9
1,186,574	-		DDA3937_RS05325	0.52	-0.2
1,186,574	-		DDA3937_RS05325	0.52	-1.6
1,186,687	+		DDA3937_RS05325	0.61	+0.3
1,186,687	+		DDA3937_RS05325	0.61	+0.2
1,186,688	-		DDA3937_RS05325	0.61	+0.8
1,186,688	-		DDA3937_RS05325	0.61	-0.2
1,186,688	-		DDA3937_RS05325	0.61	-0.7
1,186,693	-				-1.4
1,186,694	+				-1.0
1,186,694	+		DDA3937_RS05325	0.62	-0.3
1,186,694	+		DDA3937_RS05325	0.62	-1.5
1,186,694	+		DDA3937_RS05325	0.62	-0.6
1,186,694	+		DDA3937_RS05325	0.62	+1.9
1,186,695	-		DDA3937_RS05325	0.62	+1.9
1,186,695	-		DDA3937_RS05325	0.62	-0.5
1,186,701	+		DDA3937_RS05325	0.62	+0.4
1,186,701	+		DDA3937_RS05325	0.62	-0.1
1,186,702	-		DDA3937_RS05325	0.62	+0.5
1,186,702	-		DDA3937_RS05325	0.62	+2.9
1,186,796	+		DDA3937_RS05325	0.70	+0.3
1,186,796	+		DDA3937_RS05325	0.70	-0.2
1,186,796	+		DDA3937_RS05325	0.70	-1.7
1,186,797	-		DDA3937_RS05325	0.70	+0.5
1,186,797	-		DDA3937_RS05325	0.70	-0.4
1,186,892	+		DDA3937_RS05325	0.78	-0.8
1,186,892	+		DDA3937_RS05325	0.78	-1.2
1,186,892	+		DDA3937_RS05325	0.78	+0.1
1,186,893	-		DDA3937_RS05325	0.78	-0.6