Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03285 and DDA3937_RS03290 are separated by 96 nucleotides DDA3937_RS03290 and DDA3937_RS03295 are separated by 128 nucleotides DDA3937_RS03295 and DDA3937_RS03300 are separated by 262 nucleotides
DDA3937_RS03285: DDA3937_RS03285 - protein YgfX, at 717,821 to 718,252
_RS03285
DDA3937_RS03290: DDA3937_RS03290 - flavodoxin FldB, at 718,349 to 718,867
_RS03290
DDA3937_RS03295: DDA3937_RS03295 - MHS family MFS transporter, at 718,996 to 720,321
_RS03295
DDA3937_RS03300: DDA3937_RS03300 - site-specific tyrosine recombinase XerD, at 720,584 to 721,483
_RS03300
Position (kb) 718
719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 718.071 kb on + strand, within DDA3937_RS03285 at 718.072 kb on - strand, within DDA3937_RS03285 at 718.168 kb on + strand, within DDA3937_RS03285 at 718.168 kb on + strand, within DDA3937_RS03285 at 718.355 kb on + strand at 718.355 kb on + strand at 718.356 kb on - strand at 718.419 kb on + strand, within DDA3937_RS03290 at 718.459 kb on + strand, within DDA3937_RS03290 at 718.460 kb on - strand, within DDA3937_RS03290 at 718.595 kb on + strand, within DDA3937_RS03290 at 718.614 kb on + strand, within DDA3937_RS03290 at 718.731 kb on + strand, within DDA3937_RS03290 at 718.731 kb on + strand, within DDA3937_RS03290 at 718.732 kb on - strand, within DDA3937_RS03290 at 718.779 kb on - strand, within DDA3937_RS03290 at 718.831 kb on - strand at 718.831 kb on - strand at 718.859 kb on + strand at 718.867 kb on + strand at 718.867 kb on + strand at 718.867 kb on + strand at 718.868 kb on - strand at 718.868 kb on - strand at 718.868 kb on - strand at 718.868 kb on - strand at 718.942 kb on + strand at 718.997 kb on + strand at 718.998 kb on - strand at 718.998 kb on - strand at 719.072 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.084 kb on + strand at 719.085 kb on - strand at 719.085 kb on - strand at 719.085 kb on - strand at 719.085 kb on - strand at 719.097 kb on - strand at 719.123 kb on + strand at 719.123 kb on + strand at 719.123 kb on + strand at 719.124 kb on - strand at 719.149 kb on - strand, within DDA3937_RS03295 at 719.161 kb on - strand, within DDA3937_RS03295 at 719.161 kb on - strand, within DDA3937_RS03295 at 719.162 kb on + strand, within DDA3937_RS03295 at 719.162 kb on + strand, within DDA3937_RS03295 at 719.162 kb on + strand, within DDA3937_RS03295 at 719.162 kb on + strand, within DDA3937_RS03295 at 719.162 kb on + strand, within DDA3937_RS03295 at 719.163 kb on - strand, within DDA3937_RS03295 at 719.278 kb on - strand, within DDA3937_RS03295 at 719.391 kb on - strand, within DDA3937_RS03295 at 719.498 kb on + strand at 719.498 kb on + strand, within DDA3937_RS03295 at 719.499 kb on - strand, within DDA3937_RS03295 at 719.499 kb on - strand, within DDA3937_RS03295 at 719.499 kb on - strand, within DDA3937_RS03295 at 719.499 kb on - strand, within DDA3937_RS03295 at 719.499 kb on - strand, within DDA3937_RS03295 at 719.510 kb on + strand, within DDA3937_RS03295 at 719.525 kb on + strand, within DDA3937_RS03295 at 719.526 kb on - strand, within DDA3937_RS03295 at 719.537 kb on + strand, within DDA3937_RS03295 at 719.538 kb on - strand, within DDA3937_RS03295 at 719.538 kb on - strand, within DDA3937_RS03295 at 719.538 kb on - strand, within DDA3937_RS03295 at 719.538 kb on - strand, within DDA3937_RS03295 at 719.678 kb on + strand, within DDA3937_RS03295 at 719.679 kb on - strand, within DDA3937_RS03295 at 719.679 kb on - strand, within DDA3937_RS03295 at 719.692 kb on - strand, within DDA3937_RS03295 at 719.692 kb on - strand, within DDA3937_RS03295 at 719.834 kb on + strand, within DDA3937_RS03295 at 719.834 kb on + strand, within DDA3937_RS03295 at 719.835 kb on - strand, within DDA3937_RS03295 at 719.954 kb on - strand, within DDA3937_RS03295 at 719.969 kb on + strand, within DDA3937_RS03295 at 719.970 kb on - strand, within DDA3937_RS03295 at 719.970 kb on - strand, within DDA3937_RS03295 at 719.970 kb on - strand, within DDA3937_RS03295 at 719.992 kb on + strand, within DDA3937_RS03295 at 719.993 kb on - strand, within DDA3937_RS03295 at 719.993 kb on - strand, within DDA3937_RS03295 at 719.993 kb on - strand, within DDA3937_RS03295 at 720.175 kb on + strand, within DDA3937_RS03295 at 720.175 kb on + strand, within DDA3937_RS03295 at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.197 kb on + strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.198 kb on - strand at 720.297 kb on + strand at 720.321 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.359 kb on + strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.365 kb on + strand at 720.451 kb on + strand at 720.451 kb on + strand at 720.527 kb on + strand at 720.541 kb on + strand at 720.542 kb on - strand at 720.839 kb on + strand, within DDA3937_RS03300 at 720.840 kb on - strand, within DDA3937_RS03300 at 720.840 kb on - strand, within DDA3937_RS03300 at 721.185 kb on + strand at 721.275 kb on - strand, within DDA3937_RS03300
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 718,071 + DDA3937_RS03285 0.58 -1.8 718,072 - DDA3937_RS03285 0.58 +0.7 718,168 + DDA3937_RS03285 0.80 -1.1 718,168 + DDA3937_RS03285 0.80 -0.8 718,355 + +0.1 718,355 + +1.5 718,356 - +0.9 718,419 + DDA3937_RS03290 0.13 -0.5 718,459 + DDA3937_RS03290 0.21 -1.1 718,460 - DDA3937_RS03290 0.21 +0.1 718,595 + DDA3937_RS03290 0.47 +1.0 718,614 + DDA3937_RS03290 0.51 -1.8 718,731 + DDA3937_RS03290 0.74 -0.7 718,731 + DDA3937_RS03290 0.74 -0.2 718,732 - DDA3937_RS03290 0.74 +1.0 718,779 - DDA3937_RS03290 0.83 -1.3 718,831 - +0.0 718,831 - -0.9 718,859 + +0.0 718,867 + +0.2 718,867 + +0.3 718,867 + -2.1 718,868 - -0.4 718,868 - -0.4 718,868 - +0.4 718,868 - -1.7 718,942 + +0.1 718,997 + +0.2 718,998 - -0.1 718,998 - +1.8 719,072 + -0.3 719,084 + -0.6 719,084 + +0.3 719,084 + +0.1 719,084 + -1.3 719,084 + -0.1 719,084 + +0.2 719,084 + -0.2 719,084 + -0.4 719,085 - -0.1 719,085 - +0.3 719,085 - -1.0 719,085 - +0.2 719,097 - +2.1 719,123 + -0.6 719,123 + -1.8 719,123 + +0.1 719,124 - +1.3 719,149 - DDA3937_RS03295 0.12 -0.4 719,161 - DDA3937_RS03295 0.12 +0.3 719,161 - DDA3937_RS03295 0.12 +0.3 719,162 + DDA3937_RS03295 0.13 -0.7 719,162 + DDA3937_RS03295 0.13 +0.7 719,162 + DDA3937_RS03295 0.13 +0.9 719,162 + DDA3937_RS03295 0.13 -0.6 719,162 + DDA3937_RS03295 0.13 +0.6 719,163 - DDA3937_RS03295 0.13 +0.8 719,278 - DDA3937_RS03295 0.21 -0.7 719,391 - DDA3937_RS03295 0.30 +0.7 719,498 + +3.5 719,498 + DDA3937_RS03295 0.38 +1.1 719,499 - DDA3937_RS03295 0.38 -0.1 719,499 - DDA3937_RS03295 0.38 +0.1 719,499 - DDA3937_RS03295 0.38 -0.3 719,499 - DDA3937_RS03295 0.38 +0.1 719,499 - DDA3937_RS03295 0.38 +0.6 719,510 + DDA3937_RS03295 0.39 +0.6 719,525 + DDA3937_RS03295 0.40 +1.1 719,526 - DDA3937_RS03295 0.40 -1.8 719,537 + DDA3937_RS03295 0.41 -1.3 719,538 - DDA3937_RS03295 0.41 +1.0 719,538 - DDA3937_RS03295 0.41 +2.0 719,538 - DDA3937_RS03295 0.41 +0.7 719,538 - DDA3937_RS03295 0.41 -0.8 719,678 + DDA3937_RS03295 0.51 -0.3 719,679 - DDA3937_RS03295 0.52 +1.3 719,679 - DDA3937_RS03295 0.52 -0.5 719,692 - DDA3937_RS03295 0.52 +0.5 719,692 - DDA3937_RS03295 0.52 +0.5 719,834 + DDA3937_RS03295 0.63 +0.4 719,834 + DDA3937_RS03295 0.63 -1.1 719,835 - DDA3937_RS03295 0.63 +0.3 719,954 - DDA3937_RS03295 0.72 +1.6 719,969 + DDA3937_RS03295 0.73 +0.3 719,970 - DDA3937_RS03295 0.73 +1.0 719,970 - DDA3937_RS03295 0.73 +0.6 719,970 - DDA3937_RS03295 0.73 -0.3 719,992 + DDA3937_RS03295 0.75 +0.7 719,993 - DDA3937_RS03295 0.75 +0.5 719,993 - DDA3937_RS03295 0.75 +1.1 719,993 - DDA3937_RS03295 0.75 -0.4 720,175 + DDA3937_RS03295 0.89 -0.4 720,175 + DDA3937_RS03295 0.89 +1.5 720,197 + -1.5 720,197 + +1.4 720,197 + -0.4 720,197 + -0.6 720,197 + -0.4 720,197 + +0.7 720,197 + +2.1 720,197 + +0.7 720,198 - +0.6 720,198 - +0.1 720,198 - +0.2 720,198 - -0.6 720,198 - -0.5 720,198 - -0.8 720,198 - -1.6 720,198 - +0.3 720,198 - -0.8 720,198 - +0.2 720,297 + -1.6 720,321 + +0.1 720,359 + -0.3 720,359 + -0.2 720,359 + -0.3 720,359 + +1.7 720,359 + +0.2 720,359 + +0.4 720,359 + +0.5 720,359 + -1.0 720,360 - -1.4 720,360 - -0.5 720,360 - +1.5 720,360 - +0.5 720,360 - -0.3 720,360 - -0.6 720,365 + -0.1 720,451 + -0.8 720,451 + +0.6 720,527 + -0.5 720,541 + -0.3 720,542 - +0.0 720,839 + DDA3937_RS03300 0.28 -0.3 720,840 - DDA3937_RS03300 0.28 -1.8 720,840 - DDA3937_RS03300 0.28 -0.8 721,185 + +3.1 721,275 - DDA3937_RS03300 0.77 -3.0
Or see this region's nucleotide sequence