Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03250

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03245 and DDA3937_RS03250 are separated by 31 nucleotidesDDA3937_RS03250 and DDA3937_RS03255 are separated by 112 nucleotides DDA3937_RS03245: DDA3937_RS03245 - glycine cleavage system aminomethyltransferase GcvT, at 709,309 to 710,409 _RS03245 DDA3937_RS03250: DDA3937_RS03250 - glycine cleavage system protein GcvH, at 710,441 to 710,848 _RS03250 DDA3937_RS03255: DDA3937_RS03255 - aminomethyl-transferring glycine dehydrogenase, at 710,961 to 713,834 _RS03255 Position (kb) 710 711Strain fitness (log2 ratio) -2 -1 0 1 2at 709.561 kb on + strand, within DDA3937_RS03245at 709.561 kb on + strandat 709.561 kb on + strand, within DDA3937_RS03245at 709.561 kb on + strand, within DDA3937_RS03245at 709.561 kb on + strandat 709.561 kb on + strand, within DDA3937_RS03245at 709.562 kb on - strand, within DDA3937_RS03245at 709.562 kb on - strand, within DDA3937_RS03245at 709.562 kb on - strand, within DDA3937_RS03245at 709.562 kb on - strand, within DDA3937_RS03245at 709.562 kb on - strand, within DDA3937_RS03245at 709.562 kb on - strand, within DDA3937_RS03245at 709.562 kb on - strand, within DDA3937_RS03245at 709.562 kb on - strand, within DDA3937_RS03245at 709.564 kb on - strand, within DDA3937_RS03245at 709.630 kb on + strand, within DDA3937_RS03245at 709.631 kb on - strand, within DDA3937_RS03245at 709.631 kb on - strand, within DDA3937_RS03245at 709.631 kb on - strand, within DDA3937_RS03245at 709.704 kb on + strand, within DDA3937_RS03245at 709.704 kb on + strand, within DDA3937_RS03245at 709.705 kb on - strand, within DDA3937_RS03245at 709.705 kb on - strand, within DDA3937_RS03245at 709.705 kb on - strand, within DDA3937_RS03245at 709.775 kb on + strand, within DDA3937_RS03245at 709.775 kb on + strand, within DDA3937_RS03245at 709.873 kb on + strand, within DDA3937_RS03245at 709.874 kb on - strand, within DDA3937_RS03245at 709.875 kb on + strand, within DDA3937_RS03245at 709.875 kb on + strand, within DDA3937_RS03245at 709.875 kb on + strand, within DDA3937_RS03245at 709.875 kb on + strand, within DDA3937_RS03245at 709.876 kb on - strandat 709.891 kb on + strand, within DDA3937_RS03245at 710.139 kb on + strand, within DDA3937_RS03245at 710.139 kb on + strand, within DDA3937_RS03245at 710.140 kb on - strand, within DDA3937_RS03245at 710.140 kb on - strand, within DDA3937_RS03245at 710.215 kb on - strand, within DDA3937_RS03245at 710.281 kb on - strand, within DDA3937_RS03245at 710.323 kb on - strandat 710.468 kb on + strandat 710.468 kb on + strandat 710.468 kb on + strandat 710.469 kb on - strandat 710.469 kb on - strandat 710.469 kb on - strandat 710.469 kb on - strandat 710.469 kb on - strandat 710.469 kb on - strandat 710.469 kb on - strandat 710.469 kb on - strandat 710.469 kb on - strandat 710.470 kb on + strandat 710.470 kb on + strandat 710.470 kb on + strandat 710.470 kb on + strandat 710.470 kb on + strandat 710.471 kb on - strandat 710.652 kb on - strand, within DDA3937_RS03250at 710.652 kb on - strand, within DDA3937_RS03250at 710.652 kb on - strand, within DDA3937_RS03250at 710.673 kb on + strand, within DDA3937_RS03250at 710.674 kb on - strandat 710.847 kb on - strandat 710.847 kb on - strandat 710.904 kb on + strandat 710.905 kb on - strandat 710.905 kb on - strandat 710.905 kb on - strandat 710.905 kb on - strandat 710.905 kb on - strandat 711.014 kb on + strandat 711.014 kb on + strandat 711.083 kb on + strandat 711.083 kb on + strandat 711.084 kb on - strandat 711.084 kb on - strandat 711.153 kb on + strandat 711.153 kb on + strandat 711.211 kb on - strandat 711.225 kb on + strandat 711.226 kb on - strandat 711.285 kb on + strand, within DDA3937_RS03255at 711.285 kb on + strand, within DDA3937_RS03255at 711.285 kb on + strand, within DDA3937_RS03255at 711.286 kb on - strand, within DDA3937_RS03255at 711.286 kb on - strand, within DDA3937_RS03255at 711.286 kb on - strand, within DDA3937_RS03255at 711.296 kb on + strand, within DDA3937_RS03255at 711.296 kb on + strand, within DDA3937_RS03255at 711.297 kb on - strand, within DDA3937_RS03255at 711.297 kb on - strand, within DDA3937_RS03255at 711.585 kb on + strand, within DDA3937_RS03255at 711.585 kb on + strand, within DDA3937_RS03255at 711.585 kb on + strand, within DDA3937_RS03255at 711.586 kb on - strand, within DDA3937_RS03255at 711.586 kb on - strand, within DDA3937_RS03255at 711.604 kb on + strand, within DDA3937_RS03255at 711.752 kb on + strand, within DDA3937_RS03255at 711.752 kb on + strand, within DDA3937_RS03255at 711.757 kb on + strand, within DDA3937_RS03255at 711.757 kb on + strand, within DDA3937_RS03255at 711.757 kb on + strand, within DDA3937_RS03255at 711.758 kb on - strand, within DDA3937_RS03255at 711.758 kb on - strand, within DDA3937_RS03255at 711.838 kb on - strand, within DDA3937_RS03255

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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709,561 + DDA3937_RS03245 0.23 +0.7
709,561 + +1.8
709,561 + DDA3937_RS03245 0.23 +0.3
709,561 + DDA3937_RS03245 0.23 +2.3
709,561 + -0.8
709,561 + DDA3937_RS03245 0.23 +0.3
709,562 - DDA3937_RS03245 0.23 +0.7
709,562 - DDA3937_RS03245 0.23 -2.4
709,562 - DDA3937_RS03245 0.23 -0.2
709,562 - DDA3937_RS03245 0.23 -0.1
709,562 - DDA3937_RS03245 0.23 +1.2
709,562 - DDA3937_RS03245 0.23 +0.8
709,562 - DDA3937_RS03245 0.23 -1.6
709,562 - DDA3937_RS03245 0.23 -1.1
709,564 - DDA3937_RS03245 0.23 -0.4
709,630 + DDA3937_RS03245 0.29 +0.1
709,631 - DDA3937_RS03245 0.29 -0.2
709,631 - DDA3937_RS03245 0.29 +0.5
709,631 - DDA3937_RS03245 0.29 -2.2
709,704 + DDA3937_RS03245 0.36 -0.1
709,704 + DDA3937_RS03245 0.36 +0.0
709,705 - DDA3937_RS03245 0.36 -1.6
709,705 - DDA3937_RS03245 0.36 -1.4
709,705 - DDA3937_RS03245 0.36 -0.8
709,775 + DDA3937_RS03245 0.42 -1.2
709,775 + DDA3937_RS03245 0.42 -0.8
709,873 + DDA3937_RS03245 0.51 +0.0
709,874 - DDA3937_RS03245 0.51 -0.6
709,875 + DDA3937_RS03245 0.51 +0.8
709,875 + DDA3937_RS03245 0.51 +0.2
709,875 + DDA3937_RS03245 0.51 -2.6
709,875 + DDA3937_RS03245 0.51 -0.4
709,876 - -0.2
709,891 + DDA3937_RS03245 0.53 -0.4
710,139 + DDA3937_RS03245 0.75 -1.6
710,139 + DDA3937_RS03245 0.75 -1.0
710,140 - DDA3937_RS03245 0.75 +0.3
710,140 - DDA3937_RS03245 0.75 -0.4
710,215 - DDA3937_RS03245 0.82 -1.4
710,281 - DDA3937_RS03245 0.88 +2.1
710,323 - -0.3
710,468 + -0.7
710,468 + -0.4
710,468 + -0.1
710,469 - -2.2
710,469 - -0.4
710,469 - -0.1
710,469 - -0.5
710,469 - +1.3
710,469 - +2.5
710,469 - -0.9
710,469 - -0.4
710,469 - +0.4
710,470 + -0.6
710,470 + +0.1
710,470 + +2.3
710,470 + +2.4
710,470 + -1.2
710,471 - -1.6
710,652 - DDA3937_RS03250 0.52 -1.0
710,652 - DDA3937_RS03250 0.52 -1.8
710,652 - DDA3937_RS03250 0.52 +0.2
710,673 + DDA3937_RS03250 0.57 -1.0
710,674 - +1.8
710,847 - -0.5
710,847 - -1.1
710,904 + -0.4
710,905 - -0.8
710,905 - -0.8
710,905 - +0.3
710,905 - +0.7
710,905 - +1.0
711,014 + -0.9
711,014 + -1.1
711,083 + -0.4
711,083 + +0.6
711,084 - +2.3
711,084 - -1.6
711,153 + -0.1
711,153 + -1.2
711,211 - -0.1
711,225 + -1.2
711,226 - +0.1
711,285 + DDA3937_RS03255 0.11 -1.8
711,285 + DDA3937_RS03255 0.11 -1.2
711,285 + DDA3937_RS03255 0.11 +0.1
711,286 - DDA3937_RS03255 0.11 -0.2
711,286 - DDA3937_RS03255 0.11 +1.6
711,286 - DDA3937_RS03255 0.11 +1.4
711,296 + DDA3937_RS03255 0.12 -1.0
711,296 + DDA3937_RS03255 0.12 -0.2
711,297 - DDA3937_RS03255 0.12 +0.4
711,297 - DDA3937_RS03255 0.12 -1.8
711,585 + DDA3937_RS03255 0.22 -2.6
711,585 + DDA3937_RS03255 0.22 +0.2
711,585 + DDA3937_RS03255 0.22 -2.2
711,586 - DDA3937_RS03255 0.22 -0.9
711,586 - DDA3937_RS03255 0.22 -0.2
711,604 + DDA3937_RS03255 0.22 +1.3
711,752 + DDA3937_RS03255 0.28 +0.1
711,752 + DDA3937_RS03255 0.28 +0.6
711,757 + DDA3937_RS03255 0.28 -0.1
711,757 + DDA3937_RS03255 0.28 -0.5
711,757 + DDA3937_RS03255 0.28 -0.9
711,758 - DDA3937_RS03255 0.28 -1.2
711,758 - DDA3937_RS03255 0.28 +0.2
711,838 - DDA3937_RS03255 0.31 -0.0

Or see this region's nucleotide sequence