Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS03180 and DDA3937_RS03185 overlap by 32 nucleotides DDA3937_RS03185 and DDA3937_RS03190 are separated by 146 nucleotides DDA3937_RS03190 and DDA3937_RS03195 are separated by 37 nucleotides
DDA3937_RS03180: DDA3937_RS03180 - ribosomal protein S18-alanine N-acetyltransferase, at 698,591 to 699,034
_RS03180
DDA3937_RS03185: DDA3937_RS03185 - DNA polymerase III subunit psi, at 699,003 to 699,422
_RS03185
DDA3937_RS03190: DDA3937_RS03190 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 699,569 to 700,597
_RS03190
DDA3937_RS03195: DDA3937_RS03195 - aldo/keto reductase, at 700,635 to 701,630
_RS03195
Position (kb) 699
700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 698.649 kb on + strand, within DDA3937_RS03180 at 698.691 kb on + strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.859 kb on - strand, within DDA3937_RS03180 at 698.866 kb on + strand, within DDA3937_RS03180 at 698.874 kb on + strand, within DDA3937_RS03180 at 698.875 kb on - strand, within DDA3937_RS03180 at 698.916 kb on + strand, within DDA3937_RS03180 at 699.428 kb on - strand at 699.495 kb on - strand at 699.495 kb on - strand at 699.495 kb on - strand at 699.532 kb on + strand at 699.533 kb on - strand at 699.533 kb on - strand at 699.533 kb on - strand at 699.534 kb on + strand at 699.534 kb on + strand at 699.534 kb on + strand at 699.534 kb on + strand at 699.534 kb on + strand at 699.534 kb on + strand at 699.535 kb on - strand at 699.535 kb on - strand at 699.535 kb on - strand at 699.535 kb on - strand at 699.600 kb on + strand at 699.601 kb on - strand at 699.601 kb on - strand at 699.601 kb on - strand at 699.661 kb on + strand at 699.661 kb on + strand at 699.661 kb on + strand at 699.662 kb on - strand at 699.714 kb on - strand, within DDA3937_RS03190 at 699.714 kb on - strand, within DDA3937_RS03190 at 699.714 kb on - strand, within DDA3937_RS03190 at 699.714 kb on - strand, within DDA3937_RS03190 at 699.812 kb on + strand, within DDA3937_RS03190 at 699.812 kb on + strand, within DDA3937_RS03190 at 699.812 kb on + strand, within DDA3937_RS03190 at 699.813 kb on - strand, within DDA3937_RS03190 at 699.813 kb on - strand, within DDA3937_RS03190 at 699.813 kb on - strand, within DDA3937_RS03190 at 699.815 kb on + strand, within DDA3937_RS03190 at 699.815 kb on + strand, within DDA3937_RS03190 at 699.938 kb on - strand, within DDA3937_RS03190 at 700.052 kb on + strand, within DDA3937_RS03190 at 700.052 kb on + strand, within DDA3937_RS03190 at 700.053 kb on - strand, within DDA3937_RS03190 at 700.092 kb on + strand, within DDA3937_RS03190 at 700.093 kb on - strand, within DDA3937_RS03190 at 700.162 kb on + strand, within DDA3937_RS03190 at 700.399 kb on + strand, within DDA3937_RS03190 at 700.400 kb on - strand, within DDA3937_RS03190 at 700.400 kb on - strand, within DDA3937_RS03190 at 700.400 kb on - strand, within DDA3937_RS03190 at 700.585 kb on + strand at 700.585 kb on + strand at 700.586 kb on - strand at 700.586 kb on - strand at 700.586 kb on - strand at 700.586 kb on - strand at 700.586 kb on - strand at 700.596 kb on - strand at 700.632 kb on + strand at 700.632 kb on + strand at 700.632 kb on + strand at 700.633 kb on - strand at 700.633 kb on - strand at 700.828 kb on - strand, within DDA3937_RS03195 at 701.020 kb on + strand, within DDA3937_RS03195 at 701.020 kb on + strand, within DDA3937_RS03195 at 701.021 kb on - strand, within DDA3937_RS03195 at 701.021 kb on - strand, within DDA3937_RS03195 at 701.021 kb on - strand, within DDA3937_RS03195 at 701.096 kb on - strand, within DDA3937_RS03195 at 701.117 kb on + strand, within DDA3937_RS03195 at 701.117 kb on + strand, within DDA3937_RS03195 at 701.174 kb on + strand, within DDA3937_RS03195 at 701.175 kb on - strand, within DDA3937_RS03195 at 701.176 kb on + strand, within DDA3937_RS03195 at 701.177 kb on - strand, within DDA3937_RS03195 at 701.177 kb on - strand, within DDA3937_RS03195 at 701.177 kb on - strand, within DDA3937_RS03195 at 701.177 kb on - strand, within DDA3937_RS03195 at 701.260 kb on + strand, within DDA3937_RS03195 at 701.264 kb on - strand, within DDA3937_RS03195 at 701.264 kb on - strand, within DDA3937_RS03195 at 701.323 kb on + strand, within DDA3937_RS03195 at 701.323 kb on + strand, within DDA3937_RS03195 at 701.324 kb on - strand, within DDA3937_RS03195 at 701.324 kb on - strand, within DDA3937_RS03195 at 701.461 kb on + strand, within DDA3937_RS03195 at 701.461 kb on + strand, within DDA3937_RS03195 at 701.461 kb on + strand, within DDA3937_RS03195 at 701.461 kb on + strand, within DDA3937_RS03195 at 701.461 kb on + strand, within DDA3937_RS03195 at 701.461 kb on + strand, within DDA3937_RS03195 at 701.461 kb on + strand, within DDA3937_RS03195 at 701.462 kb on - strand, within DDA3937_RS03195 at 701.462 kb on - strand, within DDA3937_RS03195 at 701.462 kb on - strand, within DDA3937_RS03195 at 701.462 kb on - strand, within DDA3937_RS03195 at 701.462 kb on - strand, within DDA3937_RS03195 at 701.551 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 698,649 + DDA3937_RS03180 0.13 +1.1 698,691 + DDA3937_RS03180 0.23 +1.2 698,859 - DDA3937_RS03180 0.60 +0.4 698,859 - DDA3937_RS03180 0.60 +0.7 698,859 - DDA3937_RS03180 0.60 +0.2 698,859 - DDA3937_RS03180 0.60 +0.8 698,866 + DDA3937_RS03180 0.62 -0.1 698,874 + DDA3937_RS03180 0.64 -0.8 698,875 - DDA3937_RS03180 0.64 +0.9 698,916 + DDA3937_RS03180 0.73 +0.9 699,428 - -0.6 699,495 - +0.5 699,495 - -0.8 699,495 - -0.8 699,532 + -0.4 699,533 - -2.6 699,533 - -1.1 699,533 - -0.5 699,534 + +0.2 699,534 + +0.8 699,534 + -1.8 699,534 + +0.7 699,534 + +0.6 699,534 + +0.6 699,535 - +1.5 699,535 - +1.0 699,535 - -2.2 699,535 - +0.4 699,600 + +0.6 699,601 - +3.2 699,601 - +0.7 699,601 - -1.1 699,661 + +0.6 699,661 + +0.7 699,661 + +2.0 699,662 - +1.0 699,714 - DDA3937_RS03190 0.14 +1.2 699,714 - DDA3937_RS03190 0.14 +2.7 699,714 - DDA3937_RS03190 0.14 +2.6 699,714 - DDA3937_RS03190 0.14 +1.5 699,812 + DDA3937_RS03190 0.24 +0.3 699,812 + DDA3937_RS03190 0.24 +1.8 699,812 + DDA3937_RS03190 0.24 -0.5 699,813 - DDA3937_RS03190 0.24 +0.3 699,813 - DDA3937_RS03190 0.24 +1.1 699,813 - DDA3937_RS03190 0.24 -0.8 699,815 + DDA3937_RS03190 0.24 +0.5 699,815 + DDA3937_RS03190 0.24 -0.1 699,938 - DDA3937_RS03190 0.36 +1.3 700,052 + DDA3937_RS03190 0.47 -0.3 700,052 + DDA3937_RS03190 0.47 +0.3 700,053 - DDA3937_RS03190 0.47 -0.4 700,092 + DDA3937_RS03190 0.51 -3.3 700,093 - DDA3937_RS03190 0.51 +1.5 700,162 + DDA3937_RS03190 0.58 +1.0 700,399 + DDA3937_RS03190 0.81 +1.2 700,400 - DDA3937_RS03190 0.81 -0.6 700,400 - DDA3937_RS03190 0.81 +2.2 700,400 - DDA3937_RS03190 0.81 +0.4 700,585 + -0.8 700,585 + -0.2 700,586 - +0.9 700,586 - +1.2 700,586 - +0.5 700,586 - +1.1 700,586 - +1.0 700,596 - +0.3 700,632 + -0.8 700,632 + -2.3 700,632 + +0.0 700,633 - -3.0 700,633 - -2.1 700,828 - DDA3937_RS03195 0.19 -2.3 701,020 + DDA3937_RS03195 0.39 -0.6 701,020 + DDA3937_RS03195 0.39 -0.1 701,021 - DDA3937_RS03195 0.39 +0.5 701,021 - DDA3937_RS03195 0.39 -1.1 701,021 - DDA3937_RS03195 0.39 -0.8 701,096 - DDA3937_RS03195 0.46 +1.4 701,117 + DDA3937_RS03195 0.48 -0.0 701,117 + DDA3937_RS03195 0.48 -0.2 701,174 + DDA3937_RS03195 0.54 -0.7 701,175 - DDA3937_RS03195 0.54 -1.0 701,176 + DDA3937_RS03195 0.54 -0.3 701,177 - DDA3937_RS03195 0.54 -0.5 701,177 - DDA3937_RS03195 0.54 +0.2 701,177 - DDA3937_RS03195 0.54 +0.7 701,177 - DDA3937_RS03195 0.54 -1.1 701,260 + DDA3937_RS03195 0.63 -0.7 701,264 - DDA3937_RS03195 0.63 -1.3 701,264 - DDA3937_RS03195 0.63 -1.7 701,323 + DDA3937_RS03195 0.69 -1.6 701,323 + DDA3937_RS03195 0.69 +0.5 701,324 - DDA3937_RS03195 0.69 -0.5 701,324 - DDA3937_RS03195 0.69 +1.0 701,461 + DDA3937_RS03195 0.83 +0.3 701,461 + DDA3937_RS03195 0.83 +1.1 701,461 + DDA3937_RS03195 0.83 -1.6 701,461 + DDA3937_RS03195 0.83 +0.5 701,461 + DDA3937_RS03195 0.83 -0.7 701,461 + DDA3937_RS03195 0.83 -0.3 701,461 + DDA3937_RS03195 0.83 +0.2 701,462 - DDA3937_RS03195 0.83 +1.9 701,462 - DDA3937_RS03195 0.83 +0.0 701,462 - DDA3937_RS03195 0.83 +1.0 701,462 - DDA3937_RS03195 0.83 -0.8 701,462 - DDA3937_RS03195 0.83 +0.0 701,551 + -1.6
Or see this region's nucleotide sequence