Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02245

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02240 and DDA3937_RS02245 overlap by 4 nucleotidesDDA3937_RS02245 and DDA3937_RS02250 are separated by 40 nucleotides DDA3937_RS02240: DDA3937_RS02240 - ATP-binding cassette domain-containing protein, at 496,425 to 497,399 _RS02240 DDA3937_RS02245: DDA3937_RS02245 - ABC transporter ATP-binding protein, at 497,396 to 498,259 _RS02245 DDA3937_RS02250: DDA3937_RS02250 - M20 family metallopeptidase, at 498,300 to 499,718 _RS02250 Position (kb) 497 498 499Strain fitness (log2 ratio) -2 -1 0 1at 496.815 kb on + strand, within DDA3937_RS02240at 496.815 kb on + strand, within DDA3937_RS02240at 496.815 kb on + strand, within DDA3937_RS02240at 497.014 kb on + strand, within DDA3937_RS02240at 497.014 kb on + strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.015 kb on - strand, within DDA3937_RS02240at 497.100 kb on + strand, within DDA3937_RS02240at 497.100 kb on + strand, within DDA3937_RS02240at 497.100 kb on + strand, within DDA3937_RS02240at 497.101 kb on - strand, within DDA3937_RS02240at 497.101 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240at 497.164 kb on - strand, within DDA3937_RS02240at 497.332 kb on - strandat 497.332 kb on - strandat 497.396 kb on - strandat 497.741 kb on + strand, within DDA3937_RS02245at 497.742 kb on - strand, within DDA3937_RS02245at 497.753 kb on - strand, within DDA3937_RS02245at 497.875 kb on + strand, within DDA3937_RS02245at 497.875 kb on + strand, within DDA3937_RS02245at 497.875 kb on + strand, within DDA3937_RS02245at 497.875 kb on + strand, within DDA3937_RS02245at 497.876 kb on - strand, within DDA3937_RS02245at 497.876 kb on - strand, within DDA3937_RS02245at 497.876 kb on - strand, within DDA3937_RS02245at 497.876 kb on - strand, within DDA3937_RS02245at 497.888 kb on + strand, within DDA3937_RS02245at 498.004 kb on - strand, within DDA3937_RS02245at 498.020 kb on - strand, within DDA3937_RS02245at 498.059 kb on + strand, within DDA3937_RS02245at 498.059 kb on + strand, within DDA3937_RS02245at 498.059 kb on + strand, within DDA3937_RS02245at 498.060 kb on - strand, within DDA3937_RS02245at 498.060 kb on - strand, within DDA3937_RS02245at 498.060 kb on - strand, within DDA3937_RS02245at 498.095 kb on + strand, within DDA3937_RS02245at 498.095 kb on + strand, within DDA3937_RS02245at 498.096 kb on - strand, within DDA3937_RS02245at 498.096 kb on - strand, within DDA3937_RS02245at 498.125 kb on - strand, within DDA3937_RS02245at 498.162 kb on + strand, within DDA3937_RS02245at 498.185 kb on + strandat 498.186 kb on - strandat 498.186 kb on - strandat 498.186 kb on - strandat 498.186 kb on - strandat 498.188 kb on - strandat 498.257 kb on + strandat 498.257 kb on + strandat 498.274 kb on - strandat 498.336 kb on + strandat 498.337 kb on - strandat 498.432 kb on + strandat 498.433 kb on - strandat 498.536 kb on + strand, within DDA3937_RS02250at 498.571 kb on - strand, within DDA3937_RS02250at 498.753 kb on + strand, within DDA3937_RS02250at 498.753 kb on + strand, within DDA3937_RS02250at 498.753 kb on + strand, within DDA3937_RS02250at 498.898 kb on + strand, within DDA3937_RS02250at 498.898 kb on + strand, within DDA3937_RS02250at 498.993 kb on - strand, within DDA3937_RS02250at 499.193 kb on - strand, within DDA3937_RS02250at 499.193 kb on - strand, within DDA3937_RS02250at 499.193 kb on - strand, within DDA3937_RS02250at 499.194 kb on + strand, within DDA3937_RS02250

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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496,815 + DDA3937_RS02240 0.40 +0.3
496,815 + DDA3937_RS02240 0.40 -0.8
496,815 + DDA3937_RS02240 0.40 -0.6
497,014 + DDA3937_RS02240 0.60 -0.4
497,014 + DDA3937_RS02240 0.60 +0.2
497,015 - DDA3937_RS02240 0.61 -0.0
497,015 - DDA3937_RS02240 0.61 -0.2
497,015 - DDA3937_RS02240 0.61 +0.1
497,015 - DDA3937_RS02240 0.61 -0.2
497,100 + DDA3937_RS02240 0.69 -1.1
497,100 + DDA3937_RS02240 0.69 -0.2
497,100 + DDA3937_RS02240 0.69 +0.8
497,101 - DDA3937_RS02240 0.69 +0.8
497,101 - DDA3937_RS02240 0.69 -0.8
497,164 - DDA3937_RS02240 0.76 +0.8
497,164 - DDA3937_RS02240 0.76 +0.1
497,164 - DDA3937_RS02240 0.76 +0.1
497,164 - DDA3937_RS02240 0.76 +0.1
497,332 - +0.4
497,332 - -0.4
497,396 - -0.4
497,741 + DDA3937_RS02245 0.40 +0.2
497,742 - DDA3937_RS02245 0.40 -0.1
497,753 - DDA3937_RS02245 0.41 -1.8
497,875 + DDA3937_RS02245 0.55 -1.8
497,875 + DDA3937_RS02245 0.55 -0.8
497,875 + DDA3937_RS02245 0.55 -0.2
497,875 + DDA3937_RS02245 0.55 -0.9
497,876 - DDA3937_RS02245 0.56 +0.1
497,876 - DDA3937_RS02245 0.56 -0.1
497,876 - DDA3937_RS02245 0.56 -0.6
497,876 - DDA3937_RS02245 0.56 -0.1
497,888 + DDA3937_RS02245 0.57 -1.9
498,004 - DDA3937_RS02245 0.70 -0.4
498,020 - DDA3937_RS02245 0.72 -2.7
498,059 + DDA3937_RS02245 0.77 -1.1
498,059 + DDA3937_RS02245 0.77 -1.8
498,059 + DDA3937_RS02245 0.77 +0.2
498,060 - DDA3937_RS02245 0.77 -0.4
498,060 - DDA3937_RS02245 0.77 -0.4
498,060 - DDA3937_RS02245 0.77 +0.8
498,095 + DDA3937_RS02245 0.81 -0.7
498,095 + DDA3937_RS02245 0.81 -0.2
498,096 - DDA3937_RS02245 0.81 -0.4
498,096 - DDA3937_RS02245 0.81 -1.2
498,125 - DDA3937_RS02245 0.84 +0.1
498,162 + DDA3937_RS02245 0.89 -2.0
498,185 + -0.4
498,186 - -0.2
498,186 - -1.2
498,186 - -0.9
498,186 - -1.4
498,188 - +0.2
498,257 + -0.6
498,257 + +1.2
498,274 - -0.0
498,336 + +0.5
498,337 - -0.8
498,432 + +0.2
498,433 - -1.2
498,536 + DDA3937_RS02250 0.17 -0.2
498,571 - DDA3937_RS02250 0.19 -0.0
498,753 + DDA3937_RS02250 0.32 +0.1
498,753 + DDA3937_RS02250 0.32 +0.9
498,753 + DDA3937_RS02250 0.32 -0.4
498,898 + DDA3937_RS02250 0.42 -0.2
498,898 + DDA3937_RS02250 0.42 -1.2
498,993 - DDA3937_RS02250 0.49 -0.8
499,193 - DDA3937_RS02250 0.63 -0.6
499,193 - DDA3937_RS02250 0.63 -1.4
499,193 - DDA3937_RS02250 0.63 +0.3
499,194 + DDA3937_RS02250 0.63 +0.4

Or see this region's nucleotide sequence