Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02015

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS02005 and DDA3937_RS02010 are separated by 363 nucleotidesDDA3937_RS02010 and DDA3937_RS02015 are separated by 218 nucleotidesDDA3937_RS02015 and DDA3937_RS02020 are separated by 228 nucleotides DDA3937_RS02005: DDA3937_RS02005 - LPS export ABC transporter permease LptG, at 450,220 to 451,290 _RS02005 DDA3937_RS02010: DDA3937_RS02010 - tRNA-Leu, at 451,654 to 451,738 _RS02010 DDA3937_RS02015: DDA3937_RS02015 - integrase arm-type DNA-binding domain-containing protein, at 451,957 to 453,219 _RS02015 DDA3937_RS02020: DDA3937_RS02020 - DEAD/DEAH box helicase, at 453,448 to 456,006 _RS02020 Position (kb) 451 452 453 454Strain fitness (log2 ratio) -2 -1 0 1 2at 451.338 kb on - strandat 451.465 kb on + strandat 451.529 kb on + strandat 451.530 kb on - strandat 451.581 kb on - strandat 451.646 kb on + strandat 451.763 kb on - strandat 451.892 kb on - strandat 451.943 kb on + strandat 451.943 kb on + strandat 451.944 kb on - strandat 452.008 kb on + strandat 452.009 kb on - strandat 452.033 kb on + strandat 452.033 kb on + strandat 452.033 kb on + strandat 452.033 kb on + strandat 452.033 kb on + strandat 452.034 kb on - strandat 452.034 kb on - strandat 452.034 kb on - strandat 452.034 kb on - strandat 452.034 kb on - strandat 452.035 kb on + strandat 452.035 kb on + strandat 452.035 kb on + strandat 452.036 kb on - strandat 452.036 kb on - strandat 452.066 kb on - strandat 452.066 kb on - strandat 452.080 kb on + strandat 452.081 kb on - strandat 452.081 kb on - strandat 452.161 kb on - strand, within DDA3937_RS02015at 452.175 kb on + strand, within DDA3937_RS02015at 452.196 kb on + strand, within DDA3937_RS02015at 452.196 kb on + strand, within DDA3937_RS02015at 452.197 kb on - strand, within DDA3937_RS02015at 452.197 kb on - strand, within DDA3937_RS02015at 452.197 kb on - strand, within DDA3937_RS02015at 452.197 kb on - strand, within DDA3937_RS02015at 452.248 kb on + strand, within DDA3937_RS02015at 452.248 kb on + strand, within DDA3937_RS02015at 452.248 kb on + strand, within DDA3937_RS02015at 452.249 kb on - strand, within DDA3937_RS02015at 452.250 kb on + strand, within DDA3937_RS02015at 452.250 kb on + strand, within DDA3937_RS02015at 452.250 kb on + strand, within DDA3937_RS02015at 452.250 kb on + strand, within DDA3937_RS02015at 452.250 kb on + strand, within DDA3937_RS02015at 452.250 kb on + strand, within DDA3937_RS02015at 452.250 kb on + strand, within DDA3937_RS02015at 452.250 kb on + strand, within DDA3937_RS02015at 452.251 kb on - strand, within DDA3937_RS02015at 452.251 kb on - strand, within DDA3937_RS02015at 452.251 kb on - strand, within DDA3937_RS02015at 452.329 kb on + strand, within DDA3937_RS02015at 452.371 kb on - strand, within DDA3937_RS02015at 452.408 kb on + strand, within DDA3937_RS02015at 452.409 kb on - strand, within DDA3937_RS02015at 452.441 kb on + strand, within DDA3937_RS02015at 452.441 kb on + strand, within DDA3937_RS02015at 452.441 kb on + strand, within DDA3937_RS02015at 452.475 kb on + strand, within DDA3937_RS02015at 452.482 kb on + strand, within DDA3937_RS02015at 452.500 kb on + strand, within DDA3937_RS02015at 452.500 kb on + strand, within DDA3937_RS02015at 452.500 kb on + strand, within DDA3937_RS02015at 452.500 kb on + strand, within DDA3937_RS02015at 452.501 kb on - strand, within DDA3937_RS02015at 452.501 kb on - strand, within DDA3937_RS02015at 452.501 kb on - strand, within DDA3937_RS02015at 452.501 kb on - strand, within DDA3937_RS02015at 452.502 kb on + strand, within DDA3937_RS02015at 452.503 kb on - strand, within DDA3937_RS02015at 452.503 kb on - strand, within DDA3937_RS02015at 452.503 kb on - strand, within DDA3937_RS02015at 452.511 kb on + strand, within DDA3937_RS02015at 452.563 kb on + strand, within DDA3937_RS02015at 452.640 kb on + strand, within DDA3937_RS02015at 452.640 kb on + strand, within DDA3937_RS02015at 452.640 kb on + strand, within DDA3937_RS02015at 452.641 kb on - strand, within DDA3937_RS02015at 452.641 kb on - strand, within DDA3937_RS02015at 452.672 kb on + strand, within DDA3937_RS02015at 452.672 kb on + strand, within DDA3937_RS02015at 452.672 kb on + strand, within DDA3937_RS02015at 452.672 kb on + strand, within DDA3937_RS02015at 452.672 kb on + strand, within DDA3937_RS02015at 452.673 kb on - strandat 452.673 kb on - strand, within DDA3937_RS02015at 452.728 kb on + strand, within DDA3937_RS02015at 452.774 kb on - strand, within DDA3937_RS02015at 452.779 kb on + strand, within DDA3937_RS02015at 452.863 kb on - strand, within DDA3937_RS02015at 452.956 kb on + strand, within DDA3937_RS02015at 453.048 kb on - strand, within DDA3937_RS02015at 453.059 kb on + strand, within DDA3937_RS02015at 453.059 kb on + strand, within DDA3937_RS02015at 453.060 kb on - strand, within DDA3937_RS02015at 453.095 kb on - strandat 453.112 kb on + strandat 453.154 kb on + strandat 453.178 kb on + strandat 453.178 kb on + strandat 453.179 kb on - strandat 453.217 kb on + strandat 453.252 kb on - strandat 453.350 kb on - strandat 453.642 kb on + strandat 453.668 kb on - strandat 453.704 kb on - strand, within DDA3937_RS02020at 453.744 kb on - strand, within DDA3937_RS02020at 453.744 kb on - strand, within DDA3937_RS02020at 453.744 kb on - strand, within DDA3937_RS02020at 453.761 kb on - strand, within DDA3937_RS02020at 453.820 kb on + strand, within DDA3937_RS02020at 453.918 kb on + strand, within DDA3937_RS02020at 453.955 kb on - strand, within DDA3937_RS02020at 453.995 kb on + strandat 454.005 kb on - strand, within DDA3937_RS02020at 454.077 kb on + strand, within DDA3937_RS02020at 454.144 kb on - strand, within DDA3937_RS02020

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
451,338 - -0.1
451,465 + +0.1
451,529 + -0.0
451,530 - -0.1
451,581 - +1.1
451,646 + -2.0
451,763 - -0.3
451,892 - +1.9
451,943 + +0.7
451,943 + -0.6
451,944 - +2.2
452,008 + -0.3
452,009 - -0.5
452,033 + +0.9
452,033 + -1.5
452,033 + +0.0
452,033 + -0.5
452,033 + -0.4
452,034 - -0.3
452,034 - +0.5
452,034 - -2.1
452,034 - +0.0
452,034 - -0.1
452,035 + -0.6
452,035 + -0.0
452,035 + -0.8
452,036 - -0.6
452,036 - +0.0
452,066 - +0.4
452,066 - -1.3
452,080 + +1.1
452,081 - +0.0
452,081 - +0.5
452,161 - DDA3937_RS02015 0.16 -1.0
452,175 + DDA3937_RS02015 0.17 -0.2
452,196 + DDA3937_RS02015 0.19 -1.4
452,196 + DDA3937_RS02015 0.19 +0.3
452,197 - DDA3937_RS02015 0.19 +0.3
452,197 - DDA3937_RS02015 0.19 +0.3
452,197 - DDA3937_RS02015 0.19 +1.1
452,197 - DDA3937_RS02015 0.19 -0.3
452,248 + DDA3937_RS02015 0.23 +0.2
452,248 + DDA3937_RS02015 0.23 -0.2
452,248 + DDA3937_RS02015 0.23 -0.5
452,249 - DDA3937_RS02015 0.23 -0.3
452,250 + DDA3937_RS02015 0.23 +1.9
452,250 + DDA3937_RS02015 0.23 -0.7
452,250 + DDA3937_RS02015 0.23 -0.3
452,250 + DDA3937_RS02015 0.23 +0.2
452,250 + DDA3937_RS02015 0.23 -1.0
452,250 + DDA3937_RS02015 0.23 +0.4
452,250 + DDA3937_RS02015 0.23 +0.5
452,250 + DDA3937_RS02015 0.23 -1.0
452,251 - DDA3937_RS02015 0.23 -2.1
452,251 - DDA3937_RS02015 0.23 +0.1
452,251 - DDA3937_RS02015 0.23 -0.1
452,329 + DDA3937_RS02015 0.29 +0.0
452,371 - DDA3937_RS02015 0.33 +0.2
452,408 + DDA3937_RS02015 0.36 +0.6
452,409 - DDA3937_RS02015 0.36 +0.5
452,441 + DDA3937_RS02015 0.38 -0.3
452,441 + DDA3937_RS02015 0.38 -1.1
452,441 + DDA3937_RS02015 0.38 +0.4
452,475 + DDA3937_RS02015 0.41 -1.4
452,482 + DDA3937_RS02015 0.42 -0.1
452,500 + DDA3937_RS02015 0.43 -1.0
452,500 + DDA3937_RS02015 0.43 -0.3
452,500 + DDA3937_RS02015 0.43 -0.0
452,500 + DDA3937_RS02015 0.43 -1.5
452,501 - DDA3937_RS02015 0.43 -0.7
452,501 - DDA3937_RS02015 0.43 +0.5
452,501 - DDA3937_RS02015 0.43 +1.4
452,501 - DDA3937_RS02015 0.43 -2.1
452,502 + DDA3937_RS02015 0.43 +0.9
452,503 - DDA3937_RS02015 0.43 -0.9
452,503 - DDA3937_RS02015 0.43 -2.7
452,503 - DDA3937_RS02015 0.43 -1.8
452,511 + DDA3937_RS02015 0.44 -0.3
452,563 + DDA3937_RS02015 0.48 +0.2
452,640 + DDA3937_RS02015 0.54 -0.4
452,640 + DDA3937_RS02015 0.54 +0.1
452,640 + DDA3937_RS02015 0.54 -0.5
452,641 - DDA3937_RS02015 0.54 -0.9
452,641 - DDA3937_RS02015 0.54 +0.9
452,672 + DDA3937_RS02015 0.57 +0.0
452,672 + DDA3937_RS02015 0.57 -0.9
452,672 + DDA3937_RS02015 0.57 -0.4
452,672 + DDA3937_RS02015 0.57 -1.1
452,672 + DDA3937_RS02015 0.57 +0.5
452,673 - +1.9
452,673 - DDA3937_RS02015 0.57 -1.0
452,728 + DDA3937_RS02015 0.61 +0.4
452,774 - DDA3937_RS02015 0.65 -0.4
452,779 + DDA3937_RS02015 0.65 +0.5
452,863 - DDA3937_RS02015 0.72 -0.2
452,956 + DDA3937_RS02015 0.79 -1.0
453,048 - DDA3937_RS02015 0.86 -0.7
453,059 + DDA3937_RS02015 0.87 -1.1
453,059 + DDA3937_RS02015 0.87 -0.1
453,060 - DDA3937_RS02015 0.87 +0.4
453,095 - -0.8
453,112 + +0.9
453,154 + +0.4
453,178 + +0.3
453,178 + +1.3
453,179 - +0.1
453,217 + -1.6
453,252 - +0.6
453,350 - -0.3
453,642 + -0.6
453,668 - +0.1
453,704 - DDA3937_RS02020 0.10 -1.4
453,744 - DDA3937_RS02020 0.12 -0.1
453,744 - DDA3937_RS02020 0.12 +0.7
453,744 - DDA3937_RS02020 0.12 -0.4
453,761 - DDA3937_RS02020 0.12 -0.1
453,820 + DDA3937_RS02020 0.15 -0.6
453,918 + DDA3937_RS02020 0.18 -0.8
453,955 - DDA3937_RS02020 0.20 -1.2
453,995 + +1.4
454,005 - DDA3937_RS02020 0.22 -1.0
454,077 + DDA3937_RS02020 0.25 -0.9
454,144 - DDA3937_RS02020 0.27 -0.3

Or see this region's nucleotide sequence