Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS01670 and DDA3937_RS01675 are separated by 93 nucleotides DDA3937_RS01675 and DDA3937_RS01680 are separated by 236 nucleotides DDA3937_RS01680 and DDA3937_RS01685 overlap by 4 nucleotides
DDA3937_RS01670: DDA3937_RS01670 - TIGR01212 family radical SAM protein, at 369,641 to 370,570
_RS01670
DDA3937_RS01675: DDA3937_RS01675 - aerobic respiration two-component sensor histidine kinase ArcB, at 370,664 to 373,003
_RS01675
DDA3937_RS01680: DDA3937_RS01680 - isoprenoid biosynthesis glyoxalase ElbB, at 373,240 to 373,893
_RS01680
DDA3937_RS01685: DDA3937_RS01685 - monofunctional biosynthetic peptidoglycan transglycosylase, at 373,890 to 374,639
_RS01685
Position (kb) 370
371
372
373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 369.664 kb on + strand at 369.664 kb on + strand at 369.664 kb on + strand at 369.664 kb on + strand at 369.665 kb on - strand at 369.665 kb on - strand at 369.665 kb on - strand at 369.709 kb on + strand at 369.733 kb on + strand at 369.733 kb on + strand at 369.734 kb on - strand, within DDA3937_RS01670 at 369.734 kb on - strand, within DDA3937_RS01670 at 369.734 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.776 kb on - strand, within DDA3937_RS01670 at 369.878 kb on + strand, within DDA3937_RS01670 at 369.878 kb on + strand, within DDA3937_RS01670 at 369.888 kb on - strand, within DDA3937_RS01670 at 369.899 kb on + strand, within DDA3937_RS01670 at 369.899 kb on + strand, within DDA3937_RS01670 at 369.899 kb on + strand, within DDA3937_RS01670 at 369.900 kb on - strand, within DDA3937_RS01670 at 369.900 kb on - strand, within DDA3937_RS01670 at 369.900 kb on - strand, within DDA3937_RS01670 at 369.901 kb on + strand, within DDA3937_RS01670 at 369.901 kb on + strand, within DDA3937_RS01670 at 369.901 kb on + strand, within DDA3937_RS01670 at 369.902 kb on - strand, within DDA3937_RS01670 at 369.911 kb on + strand, within DDA3937_RS01670 at 369.941 kb on + strand, within DDA3937_RS01670 at 369.941 kb on + strand, within DDA3937_RS01670 at 369.941 kb on + strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 369.942 kb on - strand, within DDA3937_RS01670 at 370.013 kb on - strand, within DDA3937_RS01670 at 370.037 kb on + strand, within DDA3937_RS01670 at 370.173 kb on + strand, within DDA3937_RS01670 at 370.361 kb on + strand, within DDA3937_RS01670 at 370.361 kb on + strand, within DDA3937_RS01670 at 370.361 kb on + strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.362 kb on - strand, within DDA3937_RS01670 at 370.412 kb on + strand, within DDA3937_RS01670 at 370.413 kb on - strand, within DDA3937_RS01670 at 370.413 kb on - strand, within DDA3937_RS01670 at 370.420 kb on + strand, within DDA3937_RS01670 at 370.420 kb on + strand, within DDA3937_RS01670 at 370.421 kb on - strand, within DDA3937_RS01670 at 370.421 kb on - strand, within DDA3937_RS01670 at 370.421 kb on - strand, within DDA3937_RS01670 at 370.505 kb on + strand at 370.506 kb on - strand at 370.568 kb on + strand at 370.568 kb on + strand at 370.569 kb on - strand at 370.629 kb on + strand at 370.644 kb on + strand at 370.645 kb on - strand at 370.663 kb on + strand at 370.691 kb on + strand at 370.691 kb on + strand at 370.692 kb on - strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.694 kb on + strand at 370.695 kb on - strand at 370.704 kb on + strand at 370.705 kb on - strand at 370.705 kb on - strand at 370.837 kb on + strand at 370.838 kb on - strand at 370.852 kb on - strand at 370.875 kb on - strand at 370.875 kb on - strand at 370.875 kb on - strand at 371.284 kb on + strand, within DDA3937_RS01675 at 371.345 kb on + strand, within DDA3937_RS01675 at 371.345 kb on + strand, within DDA3937_RS01675 at 371.345 kb on + strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.346 kb on - strand, within DDA3937_RS01675 at 371.458 kb on + strand, within DDA3937_RS01675 at 371.459 kb on - strand, within DDA3937_RS01675 at 371.470 kb on + strand, within DDA3937_RS01675 at 371.470 kb on + strand, within DDA3937_RS01675 at 371.509 kb on + strand at 371.548 kb on + strand, within DDA3937_RS01675 at 371.548 kb on + strand, within DDA3937_RS01675 at 371.558 kb on - strand, within DDA3937_RS01675 at 371.582 kb on - strand, within DDA3937_RS01675 at 371.621 kb on + strand, within DDA3937_RS01675 at 371.621 kb on + strand, within DDA3937_RS01675 at 371.622 kb on - strand, within DDA3937_RS01675 at 371.650 kb on + strand, within DDA3937_RS01675 at 371.650 kb on + strand, within DDA3937_RS01675 at 371.650 kb on + strand, within DDA3937_RS01675 at 371.651 kb on - strand, within DDA3937_RS01675 at 371.788 kb on + strand, within DDA3937_RS01675 at 371.788 kb on + strand, within DDA3937_RS01675 at 371.788 kb on + strand, within DDA3937_RS01675 at 371.789 kb on - strand, within DDA3937_RS01675 at 371.789 kb on - strand, within DDA3937_RS01675 at 371.789 kb on - strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.810 kb on + strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 371.811 kb on - strand, within DDA3937_RS01675 at 372.023 kb on + strand, within DDA3937_RS01675 at 372.023 kb on + strand, within DDA3937_RS01675 at 372.023 kb on + strand, within DDA3937_RS01675 at 372.023 kb on + strand, within DDA3937_RS01675 at 372.023 kb on + strand, within DDA3937_RS01675 at 372.024 kb on - strand, within DDA3937_RS01675 at 372.024 kb on - strand, within DDA3937_RS01675 at 372.024 kb on - strand, within DDA3937_RS01675 at 372.024 kb on - strand, within DDA3937_RS01675 at 372.024 kb on - strand, within DDA3937_RS01675 at 372.026 kb on + strand, within DDA3937_RS01675 at 372.026 kb on + strand, within DDA3937_RS01675 at 372.026 kb on + strand, within DDA3937_RS01675 at 372.027 kb on - strand, within DDA3937_RS01675 at 372.263 kb on - strand at 372.352 kb on + strand, within DDA3937_RS01675 at 372.352 kb on + strand, within DDA3937_RS01675 at 372.393 kb on + strand, within DDA3937_RS01675 at 372.512 kb on + strand, within DDA3937_RS01675 at 372.512 kb on + strand, within DDA3937_RS01675 at 372.512 kb on + strand, within DDA3937_RS01675 at 372.513 kb on - strand, within DDA3937_RS01675 at 372.513 kb on - strand, within DDA3937_RS01675 at 372.544 kb on + strand, within DDA3937_RS01675 at 372.544 kb on + strand, within DDA3937_RS01675 at 372.588 kb on - strand, within DDA3937_RS01675 at 372.657 kb on + strand, within DDA3937_RS01675 at 372.657 kb on + strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.658 kb on - strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.683 kb on + strand, within DDA3937_RS01675 at 372.894 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.915 kb on + strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.916 kb on - strand at 372.966 kb on + strand at 372.966 kb on + strand at 372.967 kb on - strand at 373.031 kb on + strand at 373.088 kb on - strand at 373.131 kb on + strand at 373.131 kb on + strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.132 kb on - strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.179 kb on + strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.180 kb on - strand at 373.211 kb on - strand at 373.220 kb on - strand at 373.260 kb on - strand at 373.260 kb on - strand at 373.279 kb on + strand at 373.279 kb on + strand at 373.632 kb on - strand, within DDA3937_RS01680 at 373.644 kb on + strand, within DDA3937_RS01680 at 373.644 kb on + strand, within DDA3937_RS01680 at 373.677 kb on + strand, within DDA3937_RS01680 at 373.692 kb on + strand, within DDA3937_RS01680 at 373.693 kb on - strand, within DDA3937_RS01680 at 373.763 kb on + strand, within DDA3937_RS01680 at 373.763 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.813 kb on + strand, within DDA3937_RS01680 at 373.814 kb on - strand, within DDA3937_RS01680 at 373.907 kb on - strand at 373.907 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 369,664 + -0.4 369,664 + -1.7 369,664 + +0.2 369,664 + +1.1 369,665 - -1.0 369,665 - -0.1 369,665 - -0.5 369,709 + +1.6 369,733 + +0.4 369,733 + -1.1 369,734 - DDA3937_RS01670 0.10 -1.1 369,734 - DDA3937_RS01670 0.10 -0.1 369,734 - DDA3937_RS01670 0.10 -2.8 369,776 - DDA3937_RS01670 0.15 -0.6 369,776 - DDA3937_RS01670 0.15 -1.6 369,776 - DDA3937_RS01670 0.15 -1.3 369,776 - DDA3937_RS01670 0.15 -0.7 369,776 - DDA3937_RS01670 0.15 +0.9 369,776 - DDA3937_RS01670 0.15 -2.0 369,878 + DDA3937_RS01670 0.25 +0.9 369,878 + DDA3937_RS01670 0.25 -0.4 369,888 - DDA3937_RS01670 0.27 +0.9 369,899 + DDA3937_RS01670 0.28 +0.0 369,899 + DDA3937_RS01670 0.28 +2.0 369,899 + DDA3937_RS01670 0.28 +0.5 369,900 - DDA3937_RS01670 0.28 -0.6 369,900 - DDA3937_RS01670 0.28 +0.7 369,900 - DDA3937_RS01670 0.28 -0.9 369,901 + DDA3937_RS01670 0.28 +2.2 369,901 + DDA3937_RS01670 0.28 +0.8 369,901 + DDA3937_RS01670 0.28 -0.8 369,902 - DDA3937_RS01670 0.28 -0.0 369,911 + DDA3937_RS01670 0.29 -0.6 369,941 + DDA3937_RS01670 0.32 +1.3 369,941 + DDA3937_RS01670 0.32 +0.4 369,941 + DDA3937_RS01670 0.32 +0.7 369,942 - DDA3937_RS01670 0.32 -0.4 369,942 - DDA3937_RS01670 0.32 -0.4 369,942 - DDA3937_RS01670 0.32 -2.1 369,942 - DDA3937_RS01670 0.32 +0.8 370,013 - DDA3937_RS01670 0.40 -1.1 370,037 + DDA3937_RS01670 0.43 +0.4 370,173 + DDA3937_RS01670 0.57 +0.5 370,361 + DDA3937_RS01670 0.77 +0.3 370,361 + DDA3937_RS01670 0.77 +0.6 370,361 + DDA3937_RS01670 0.77 +1.5 370,362 - DDA3937_RS01670 0.78 -0.9 370,362 - DDA3937_RS01670 0.78 +1.5 370,362 - DDA3937_RS01670 0.78 -1.1 370,362 - DDA3937_RS01670 0.78 +2.4 370,362 - DDA3937_RS01670 0.78 -2.3 370,362 - DDA3937_RS01670 0.78 +0.2 370,412 + DDA3937_RS01670 0.83 +1.3 370,413 - DDA3937_RS01670 0.83 +0.6 370,413 - DDA3937_RS01670 0.83 +0.8 370,420 + DDA3937_RS01670 0.84 +0.8 370,420 + DDA3937_RS01670 0.84 +0.4 370,421 - DDA3937_RS01670 0.84 -1.4 370,421 - DDA3937_RS01670 0.84 +0.4 370,421 - DDA3937_RS01670 0.84 +1.3 370,505 + +1.5 370,506 - +0.6 370,568 + +1.6 370,568 + -0.7 370,569 - +1.0 370,629 + +0.4 370,644 + +0.8 370,645 - -0.9 370,663 + -0.9 370,691 + -0.7 370,691 + -0.1 370,692 - -0.5 370,694 + -0.0 370,694 + -0.8 370,694 + -0.9 370,694 + -1.0 370,694 + +0.6 370,694 + -0.2 370,695 - -0.3 370,704 + +0.7 370,705 - +1.1 370,705 - -0.6 370,837 + +0.3 370,838 - -1.4 370,852 - -2.1 370,875 - -0.1 370,875 - +0.9 370,875 - +1.3 371,284 + DDA3937_RS01675 0.26 +1.6 371,345 + DDA3937_RS01675 0.29 +0.8 371,345 + DDA3937_RS01675 0.29 +0.2 371,345 + DDA3937_RS01675 0.29 -0.9 371,346 - DDA3937_RS01675 0.29 -1.7 371,346 - DDA3937_RS01675 0.29 -0.4 371,346 - DDA3937_RS01675 0.29 -0.7 371,346 - DDA3937_RS01675 0.29 +1.3 371,458 + DDA3937_RS01675 0.34 +0.2 371,459 - DDA3937_RS01675 0.34 -0.0 371,470 + DDA3937_RS01675 0.34 -0.7 371,470 + DDA3937_RS01675 0.34 +0.3 371,509 + +2.5 371,548 + DDA3937_RS01675 0.38 +0.4 371,548 + DDA3937_RS01675 0.38 +0.3 371,558 - DDA3937_RS01675 0.38 +0.7 371,582 - DDA3937_RS01675 0.39 +0.9 371,621 + DDA3937_RS01675 0.41 -0.3 371,621 + DDA3937_RS01675 0.41 -0.1 371,622 - DDA3937_RS01675 0.41 +0.0 371,650 + DDA3937_RS01675 0.42 +1.3 371,650 + DDA3937_RS01675 0.42 +1.5 371,650 + DDA3937_RS01675 0.42 +0.1 371,651 - DDA3937_RS01675 0.42 -2.4 371,788 + DDA3937_RS01675 0.48 -0.3 371,788 + DDA3937_RS01675 0.48 +0.8 371,788 + DDA3937_RS01675 0.48 +2.0 371,789 - DDA3937_RS01675 0.48 +0.0 371,789 - DDA3937_RS01675 0.48 -0.2 371,789 - DDA3937_RS01675 0.48 +0.1 371,810 + DDA3937_RS01675 0.49 +1.1 371,810 + DDA3937_RS01675 0.49 +0.3 371,810 + DDA3937_RS01675 0.49 +1.2 371,810 + DDA3937_RS01675 0.49 +0.9 371,810 + DDA3937_RS01675 0.49 +3.0 371,810 + DDA3937_RS01675 0.49 +1.4 371,810 + DDA3937_RS01675 0.49 -0.1 371,810 + +3.1 371,810 + DDA3937_RS01675 0.49 +0.2 371,810 + DDA3937_RS01675 0.49 +0.9 371,810 + DDA3937_RS01675 0.49 +0.7 371,811 - DDA3937_RS01675 0.49 +0.2 371,811 - DDA3937_RS01675 0.49 -0.3 371,811 - DDA3937_RS01675 0.49 +0.3 371,811 - DDA3937_RS01675 0.49 -1.9 371,811 - DDA3937_RS01675 0.49 +0.0 371,811 - DDA3937_RS01675 0.49 -1.3 372,023 + DDA3937_RS01675 0.58 +1.0 372,023 + DDA3937_RS01675 0.58 +1.1 372,023 + DDA3937_RS01675 0.58 +2.7 372,023 + DDA3937_RS01675 0.58 +0.6 372,023 + DDA3937_RS01675 0.58 +1.1 372,024 - DDA3937_RS01675 0.58 -0.7 372,024 - DDA3937_RS01675 0.58 -1.2 372,024 - DDA3937_RS01675 0.58 +0.6 372,024 - DDA3937_RS01675 0.58 +0.0 372,024 - DDA3937_RS01675 0.58 -0.1 372,026 + DDA3937_RS01675 0.58 +1.6 372,026 + DDA3937_RS01675 0.58 -0.4 372,026 + DDA3937_RS01675 0.58 +2.5 372,027 - DDA3937_RS01675 0.58 -0.7 372,263 - +1.5 372,352 + DDA3937_RS01675 0.72 +1.0 372,352 + DDA3937_RS01675 0.72 +0.9 372,393 + DDA3937_RS01675 0.74 +1.1 372,512 + DDA3937_RS01675 0.79 +1.8 372,512 + DDA3937_RS01675 0.79 +0.8 372,512 + DDA3937_RS01675 0.79 +0.7 372,513 - DDA3937_RS01675 0.79 -0.3 372,513 - DDA3937_RS01675 0.79 -0.3 372,544 + DDA3937_RS01675 0.80 +0.9 372,544 + DDA3937_RS01675 0.80 +0.9 372,588 - DDA3937_RS01675 0.82 -0.3 372,657 + DDA3937_RS01675 0.85 +0.7 372,657 + DDA3937_RS01675 0.85 +1.2 372,658 - DDA3937_RS01675 0.85 -1.3 372,658 - DDA3937_RS01675 0.85 +0.9 372,658 - DDA3937_RS01675 0.85 -1.3 372,658 - DDA3937_RS01675 0.85 -1.4 372,683 + DDA3937_RS01675 0.86 +1.3 372,683 + DDA3937_RS01675 0.86 +1.5 372,683 + DDA3937_RS01675 0.86 +2.0 372,683 + DDA3937_RS01675 0.86 +1.6 372,683 + DDA3937_RS01675 0.86 +1.1 372,894 + +1.4 372,915 + +1.9 372,915 + +1.9 372,915 + +0.9 372,915 + +1.2 372,915 + +2.4 372,915 + +0.9 372,915 + +1.1 372,915 + +1.2 372,915 + +0.6 372,916 - -0.0 372,916 - -1.1 372,916 - +0.3 372,916 - +1.3 372,916 - +2.0 372,916 - -1.3 372,916 - +3.3 372,916 - -0.7 372,966 + +2.0 372,966 + +2.0 372,967 - -1.4 373,031 + +2.4 373,088 - +2.5 373,131 + +2.6 373,131 + +2.6 373,132 - +2.3 373,132 - -0.2 373,132 - +1.8 373,132 - +0.4 373,138 + +1.9 373,138 + +1.4 373,138 + +1.9 373,138 + +2.2 373,139 - +1.5 373,139 - +1.7 373,139 - +1.2 373,179 + +2.1 373,179 + +2.7 373,179 + +1.7 373,179 + +2.6 373,179 + +2.2 373,179 + +2.1 373,180 - +0.7 373,180 - +1.3 373,180 - +0.9 373,180 - +0.5 373,180 - +1.4 373,211 - -1.6 373,220 - -1.7 373,260 - -2.4 373,260 - -1.3 373,279 + -0.9 373,279 + -0.4 373,632 - DDA3937_RS01680 0.60 -1.0 373,644 + DDA3937_RS01680 0.62 +0.3 373,644 + DDA3937_RS01680 0.62 -0.1 373,677 + DDA3937_RS01680 0.67 -0.4 373,692 + DDA3937_RS01680 0.69 -0.1 373,693 - DDA3937_RS01680 0.69 +0.2 373,763 + DDA3937_RS01680 0.80 -1.0 373,763 + DDA3937_RS01680 0.80 +0.0 373,813 + DDA3937_RS01680 0.88 +2.8 373,813 + DDA3937_RS01680 0.88 -1.7 373,813 + +0.1 373,813 + DDA3937_RS01680 0.88 +0.3 373,813 + DDA3937_RS01680 0.88 +0.5 373,813 + DDA3937_RS01680 0.88 +0.3 373,813 + DDA3937_RS01680 0.88 +0.3 373,814 - DDA3937_RS01680 0.88 +0.5 373,907 - +0.3 373,907 - -0.1
Or see this region's nucleotide sequence