Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00745

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS00735 and DDA3937_RS00740 overlap by 4 nucleotidesDDA3937_RS00740 and DDA3937_RS00745 are separated by 205 nucleotidesDDA3937_RS00745 and DDA3937_RS00750 are separated by 73 nucleotidesDDA3937_RS00750 and DDA3937_RS00755 are separated by 169 nucleotides DDA3937_RS00735: DDA3937_RS00735 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 174,312 to 175,388 _RS00735 DDA3937_RS00740: DDA3937_RS00740 - glycerophosphodiester phosphodiesterase, at 175,385 to 176,134 _RS00740 DDA3937_RS00745: DDA3937_RS00745 - AEC family transporter, at 176,340 to 177,296 _RS00745 DDA3937_RS00750: DDA3937_RS00750 - DUF2756 domain-containing protein, at 177,370 to 177,654 _RS00750 DDA3937_RS00755: DDA3937_RS00755 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 177,824 to 178,288 _RS00755 Position (kb) 176 177 178Strain fitness (log2 ratio) -2 -1 0 1 2at 175.349 kb on + strandat 175.349 kb on + strandat 175.350 kb on - strandat 175.350 kb on - strandat 175.350 kb on - strandat 175.351 kb on + strandat 175.351 kb on + strandat 175.351 kb on + strandat 175.352 kb on - strandat 175.352 kb on - strandat 175.352 kb on - strandat 175.706 kb on + strand, within DDA3937_RS00740at 175.706 kb on + strand, within DDA3937_RS00740at 175.723 kb on + strand, within DDA3937_RS00740at 175.724 kb on - strand, within DDA3937_RS00740at 175.960 kb on + strand, within DDA3937_RS00740at 175.960 kb on + strand, within DDA3937_RS00740at 176.027 kb on + strand, within DDA3937_RS00740at 176.027 kb on + strand, within DDA3937_RS00740at 176.027 kb on + strand, within DDA3937_RS00740at 176.027 kb on + strand, within DDA3937_RS00740at 176.028 kb on - strand, within DDA3937_RS00740at 176.029 kb on + strand, within DDA3937_RS00740at 176.030 kb on - strand, within DDA3937_RS00740at 176.030 kb on - strand, within DDA3937_RS00740at 176.122 kb on + strandat 176.123 kb on - strandat 176.138 kb on + strandat 176.138 kb on + strandat 176.138 kb on + strandat 176.144 kb on + strandat 176.144 kb on + strandat 176.148 kb on + strandat 176.235 kb on - strandat 176.329 kb on - strandat 176.510 kb on + strand, within DDA3937_RS00745at 176.511 kb on - strand, within DDA3937_RS00745at 176.511 kb on - strand, within DDA3937_RS00745at 176.582 kb on + strand, within DDA3937_RS00745at 176.798 kb on - strand, within DDA3937_RS00745at 176.901 kb on + strand, within DDA3937_RS00745at 176.902 kb on - strand, within DDA3937_RS00745at 177.018 kb on - strand, within DDA3937_RS00745at 177.018 kb on - strand, within DDA3937_RS00745at 177.048 kb on - strand, within DDA3937_RS00745at 177.170 kb on + strand, within DDA3937_RS00745at 177.292 kb on + strandat 177.293 kb on - strandat 177.295 kb on - strandat 177.295 kb on - strandat 177.300 kb on - strandat 177.340 kb on + strandat 177.340 kb on + strandat 177.367 kb on - strandat 177.374 kb on + strandat 177.443 kb on - strandat 177.484 kb on - strand, within DDA3937_RS00750at 177.583 kb on + strand, within DDA3937_RS00750at 177.611 kb on - strand, within DDA3937_RS00750at 177.644 kb on - strandat 177.646 kb on + strandat 177.646 kb on + strandat 177.646 kb on + strandat 177.647 kb on - strandat 177.647 kb on - strandat 177.647 kb on - strandat 177.647 kb on - strandat 177.691 kb on - strandat 177.691 kb on - strandat 177.783 kb on - strandat 177.783 kb on - strandat 177.788 kb on - strandat 177.788 kb on - strandat 177.789 kb on + strandat 177.790 kb on - strandat 177.820 kb on + strandat 177.820 kb on + strandat 177.832 kb on + strandat 177.842 kb on + strandat 177.843 kb on - strandat 177.843 kb on - strandat 177.874 kb on + strand, within DDA3937_RS00755at 177.875 kb on - strand, within DDA3937_RS00755at 177.875 kb on - strand, within DDA3937_RS00755at 177.877 kb on + strand, within DDA3937_RS00755at 178.010 kb on + strand, within DDA3937_RS00755at 178.010 kb on + strand, within DDA3937_RS00755at 178.011 kb on - strand, within DDA3937_RS00755at 178.011 kb on - strand, within DDA3937_RS00755at 178.079 kb on + strand, within DDA3937_RS00755at 178.094 kb on + strand, within DDA3937_RS00755at 178.150 kb on + strandat 178.151 kb on - strand, within DDA3937_RS00755at 178.247 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
175,349 + -0.2
175,349 + -0.0
175,350 - -0.5
175,350 - +0.6
175,350 - +0.1
175,351 + -0.1
175,351 + +0.7
175,351 + +0.7
175,352 - -0.4
175,352 - +0.6
175,352 - -0.0
175,706 + DDA3937_RS00740 0.43 -1.0
175,706 + DDA3937_RS00740 0.43 +0.5
175,723 + DDA3937_RS00740 0.45 +0.3
175,724 - DDA3937_RS00740 0.45 +0.3
175,960 + DDA3937_RS00740 0.77 +0.1
175,960 + DDA3937_RS00740 0.77 -0.4
176,027 + DDA3937_RS00740 0.86 -0.6
176,027 + DDA3937_RS00740 0.86 +1.7
176,027 + DDA3937_RS00740 0.86 -0.2
176,027 + DDA3937_RS00740 0.86 -0.8
176,028 - DDA3937_RS00740 0.86 +0.1
176,029 + DDA3937_RS00740 0.86 -1.3
176,030 - DDA3937_RS00740 0.86 -0.2
176,030 - DDA3937_RS00740 0.86 -2.3
176,122 + +0.4
176,123 - -1.0
176,138 + -2.2
176,138 + +0.7
176,138 + +2.7
176,144 + -0.0
176,144 + -0.0
176,148 + -0.2
176,235 - -0.5
176,329 - +0.3
176,510 + DDA3937_RS00745 0.18 +0.2
176,511 - DDA3937_RS00745 0.18 -1.0
176,511 - DDA3937_RS00745 0.18 +1.0
176,582 + DDA3937_RS00745 0.25 +0.7
176,798 - DDA3937_RS00745 0.48 -1.6
176,901 + DDA3937_RS00745 0.59 +0.9
176,902 - DDA3937_RS00745 0.59 +2.0
177,018 - DDA3937_RS00745 0.71 +0.5
177,018 - DDA3937_RS00745 0.71 +0.1
177,048 - DDA3937_RS00745 0.74 -0.1
177,170 + DDA3937_RS00745 0.87 -0.4
177,292 + -0.3
177,293 - -1.3
177,295 - -0.4
177,295 - -0.6
177,300 - +1.0
177,340 + -0.4
177,340 + +0.2
177,367 - +0.4
177,374 + -0.6
177,443 - -1.6
177,484 - DDA3937_RS00750 0.40 -1.1
177,583 + DDA3937_RS00750 0.75 -0.7
177,611 - DDA3937_RS00750 0.85 -0.1
177,644 - -1.2
177,646 + +0.7
177,646 + +2.3
177,646 + -0.4
177,647 - +1.0
177,647 - -2.6
177,647 - -1.3
177,647 - -0.8
177,691 - -1.5
177,691 - -0.5
177,783 - -0.6
177,783 - -0.2
177,788 - +0.3
177,788 - -0.8
177,789 + -0.0
177,790 - +0.6
177,820 + +0.2
177,820 + +1.9
177,832 + +0.7
177,842 + -0.0
177,843 - +0.7
177,843 - -0.0
177,874 + DDA3937_RS00755 0.11 -0.8
177,875 - DDA3937_RS00755 0.11 +1.4
177,875 - DDA3937_RS00755 0.11 -0.9
177,877 + DDA3937_RS00755 0.11 -0.9
178,010 + DDA3937_RS00755 0.40 -0.0
178,010 + DDA3937_RS00755 0.40 -0.0
178,011 - DDA3937_RS00755 0.40 -0.3
178,011 - DDA3937_RS00755 0.40 +0.4
178,079 + DDA3937_RS00755 0.55 +0.7
178,094 + DDA3937_RS00755 0.58 -0.0
178,150 + +1.4
178,151 - DDA3937_RS00755 0.70 -1.1
178,247 + +1.0

Or see this region's nucleotide sequence