Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00280 and DDA3937_RS00285 are separated by 376 nucleotides DDA3937_RS00285 and DDA3937_RS00290 are separated by 178 nucleotides DDA3937_RS00290 and DDA3937_RS00295 are separated by 444 nucleotides
DDA3937_RS00280: DDA3937_RS00280 - D-serine ammonia-lyase, at 66,100 to 67,473
_RS00280
DDA3937_RS00285: DDA3937_RS00285 - hypothetical protein, at 67,850 to 68,131
_RS00285
DDA3937_RS00290: DDA3937_RS00290 - DUF1471 domain-containing protein, at 68,310 to 68,576
_RS00290
DDA3937_RS00295: DDA3937_RS00295 - ROK family transcriptional regulator, at 69,021 to 70,124
_RS00295
Position (kb) 67
68
69 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 67.080 kb on - strand, within DDA3937_RS00280 at 67.080 kb on - strand, within DDA3937_RS00280 at 67.080 kb on - strand, within DDA3937_RS00280 at 67.091 kb on + strand, within DDA3937_RS00280 at 67.092 kb on - strand, within DDA3937_RS00280 at 67.150 kb on + strand, within DDA3937_RS00280 at 67.150 kb on + strand, within DDA3937_RS00280 at 67.150 kb on + strand, within DDA3937_RS00280 at 67.151 kb on - strand, within DDA3937_RS00280 at 67.151 kb on - strand, within DDA3937_RS00280 at 67.452 kb on + strand at 67.452 kb on + strand at 67.453 kb on - strand at 67.457 kb on + strand at 67.458 kb on - strand at 67.458 kb on - strand at 67.459 kb on + strand at 67.460 kb on - strand at 67.475 kb on - strand at 67.526 kb on + strand at 67.609 kb on - strand at 67.614 kb on + strand at 67.633 kb on + strand at 67.692 kb on + strand at 67.719 kb on - strand at 67.775 kb on + strand at 67.775 kb on + strand at 67.775 kb on + strand at 67.776 kb on - strand at 67.776 kb on - strand at 67.776 kb on - strand at 67.820 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.845 kb on + strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.846 kb on - strand at 67.857 kb on + strand at 67.857 kb on + strand at 67.857 kb on + strand at 67.857 kb on + strand at 67.912 kb on + strand, within DDA3937_RS00285 at 67.913 kb on - strand, within DDA3937_RS00285 at 67.992 kb on - strand, within DDA3937_RS00285 at 67.992 kb on - strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.053 kb on + strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.054 kb on - strand, within DDA3937_RS00285 at 68.259 kb on + strand at 68.401 kb on + strand, within DDA3937_RS00290 at 68.401 kb on + strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290 at 68.402 kb on - strand, within DDA3937_RS00290 at 68.568 kb on + strand at 68.568 kb on + strand at 68.568 kb on + strand at 68.569 kb on - strand at 68.569 kb on - strand at 68.569 kb on - strand at 68.569 kb on - strand at 68.569 kb on - strand at 68.608 kb on + strand at 68.609 kb on - strand at 68.614 kb on + strand at 68.672 kb on - strand at 68.702 kb on + strand at 68.702 kb on + strand at 68.702 kb on + strand at 68.972 kb on + strand at 68.972 kb on + strand at 68.972 kb on + strand at 68.972 kb on + strand at 68.972 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 67,080 - DDA3937_RS00280 0.71 +0.3 67,080 - DDA3937_RS00280 0.71 -0.6 67,080 - DDA3937_RS00280 0.71 +2.3 67,091 + DDA3937_RS00280 0.72 -0.8 67,092 - DDA3937_RS00280 0.72 +0.8 67,150 + DDA3937_RS00280 0.76 +1.1 67,150 + DDA3937_RS00280 0.76 -0.3 67,150 + DDA3937_RS00280 0.76 -1.4 67,151 - DDA3937_RS00280 0.76 -1.6 67,151 - DDA3937_RS00280 0.76 +0.5 67,452 + +0.6 67,452 + +0.6 67,453 - -0.4 67,457 + -1.3 67,458 - +0.8 67,458 - +1.3 67,459 + -0.1 67,460 - -0.8 67,475 - +0.6 67,526 + +0.1 67,609 - +1.0 67,614 + -0.4 67,633 + +0.7 67,692 + +0.1 67,719 - -0.3 67,775 + -0.8 67,775 + -0.2 67,775 + +1.0 67,776 - -0.8 67,776 - +0.2 67,776 - -2.8 67,820 + -1.6 67,845 + -1.3 67,845 + +1.3 67,845 + -0.5 67,845 + -1.9 67,845 + +0.4 67,846 - -0.1 67,846 - -0.8 67,846 - +1.2 67,846 - -0.6 67,846 - +0.2 67,846 - -0.8 67,857 + -0.3 67,857 + +0.2 67,857 + -1.1 67,857 + -1.0 67,912 + DDA3937_RS00285 0.22 +2.7 67,913 - DDA3937_RS00285 0.22 +0.7 67,992 - DDA3937_RS00285 0.50 +3.2 67,992 - DDA3937_RS00285 0.50 -0.2 68,053 + DDA3937_RS00285 0.72 -0.3 68,053 + DDA3937_RS00285 0.72 -1.8 68,053 + DDA3937_RS00285 0.72 -3.3 68,053 + DDA3937_RS00285 0.72 -2.3 68,053 + DDA3937_RS00285 0.72 -1.3 68,053 + DDA3937_RS00285 0.72 +1.4 68,053 + DDA3937_RS00285 0.72 -0.3 68,053 + DDA3937_RS00285 0.72 -2.6 68,054 - DDA3937_RS00285 0.72 +0.6 68,054 - DDA3937_RS00285 0.72 +0.2 68,054 - DDA3937_RS00285 0.72 -0.6 68,054 - DDA3937_RS00285 0.72 -0.8 68,054 - DDA3937_RS00285 0.72 -0.7 68,054 - DDA3937_RS00285 0.72 +0.1 68,259 + +0.4 68,401 + DDA3937_RS00290 0.34 +0.1 68,401 + DDA3937_RS00290 0.34 +0.5 68,402 - DDA3937_RS00290 0.34 -0.6 68,402 - DDA3937_RS00290 0.34 -0.1 68,402 - DDA3937_RS00290 0.34 -0.2 68,402 - DDA3937_RS00290 0.34 -2.0 68,568 + +0.0 68,568 + -0.6 68,568 + -0.6 68,569 - -0.2 68,569 - -1.6 68,569 - -0.6 68,569 - +1.4 68,569 - -0.1 68,608 + -0.2 68,609 - -0.6 68,614 + +0.5 68,672 - -0.0 68,702 + +0.1 68,702 + +1.4 68,702 + +1.4 68,972 + -0.2 68,972 + +0.2 68,972 + -0.3 68,972 + -1.3 68,972 + -0.2
Or see this region's nucleotide sequence