Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00145 and DDA3937_RS00150 are separated by 7 nucleotides DDA3937_RS00150 and DDA3937_RS00155 are separated by 33 nucleotides DDA3937_RS00155 and DDA3937_RS00160 are separated by 63 nucleotides
DDA3937_RS00145: DDA3937_RS00145 - glucose-1-phosphatase, at 34,898 to 35,509
_RS00145
DDA3937_RS00150: DDA3937_RS00150 - D-tyrosyl-tRNA(Tyr) deacylase, at 35,517 to 35,954
_RS00150
DDA3937_RS00155: DDA3937_RS00155 - fatty acid biosynthesis protein FabY, at 35,988 to 36,929
_RS00155
DDA3937_RS00160: DDA3937_RS00160 - AsmA family protein, at 36,993 to 38,735
_RS00160
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.098 kb on + strand, within DDA3937_RS00145 at 35.098 kb on + strand, within DDA3937_RS00145 at 35.099 kb on - strand, within DDA3937_RS00145 at 35.099 kb on - strand, within DDA3937_RS00145 at 35.145 kb on + strand, within DDA3937_RS00145 at 35.146 kb on - strand, within DDA3937_RS00145 at 35.146 kb on - strand, within DDA3937_RS00145 at 35.151 kb on + strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.152 kb on - strand, within DDA3937_RS00145 at 35.171 kb on - strand, within DDA3937_RS00145 at 35.208 kb on + strand, within DDA3937_RS00145 at 35.209 kb on - strand, within DDA3937_RS00145 at 35.209 kb on - strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.211 kb on + strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.212 kb on - strand, within DDA3937_RS00145 at 35.221 kb on + strand, within DDA3937_RS00145 at 35.221 kb on + strand, within DDA3937_RS00145 at 35.291 kb on + strand, within DDA3937_RS00145 at 35.336 kb on + strand, within DDA3937_RS00145 at 35.337 kb on - strand, within DDA3937_RS00145 at 35.337 kb on - strand, within DDA3937_RS00145 at 35.440 kb on + strand, within DDA3937_RS00145 at 35.440 kb on + strand, within DDA3937_RS00145 at 35.440 kb on + strand, within DDA3937_RS00145 at 35.441 kb on - strand, within DDA3937_RS00145 at 35.495 kb on - strand at 35.495 kb on - strand at 35.507 kb on + strand at 35.508 kb on - strand at 35.516 kb on + strand at 35.516 kb on + strand at 35.517 kb on - strand at 35.527 kb on + strand at 35.561 kb on - strand, within DDA3937_RS00150 at 35.572 kb on + strand, within DDA3937_RS00150 at 35.602 kb on + strand, within DDA3937_RS00150 at 35.602 kb on + strand, within DDA3937_RS00150 at 35.615 kb on - strand, within DDA3937_RS00150 at 35.753 kb on + strand, within DDA3937_RS00150 at 35.832 kb on + strand, within DDA3937_RS00150 at 35.832 kb on + strand, within DDA3937_RS00150 at 35.833 kb on - strand, within DDA3937_RS00150 at 35.838 kb on + strand, within DDA3937_RS00150 at 35.838 kb on + strand, within DDA3937_RS00150 at 35.838 kb on + strand, within DDA3937_RS00150 at 35.838 kb on + strand, within DDA3937_RS00150 at 35.908 kb on + strand, within DDA3937_RS00150 at 35.908 kb on + strand at 35.908 kb on + strand, within DDA3937_RS00150 at 35.908 kb on + strand, within DDA3937_RS00150 at 35.909 kb on - strand, within DDA3937_RS00150 at 35.909 kb on - strand, within DDA3937_RS00150 at 35.909 kb on - strand, within DDA3937_RS00150 at 35.909 kb on - strand, within DDA3937_RS00150 at 35.909 kb on - strand, within DDA3937_RS00150 at 35.917 kb on + strand at 35.952 kb on + strand at 35.953 kb on - strand at 35.963 kb on + strand at 35.963 kb on + strand at 35.963 kb on + strand at 35.963 kb on + strand at 35.963 kb on + strand at 35.963 kb on + strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.964 kb on - strand at 35.987 kb on + strand at 35.987 kb on + strand at 35.987 kb on + strand at 35.987 kb on + strand at 35.988 kb on - strand at 35.991 kb on + strand at 35.991 kb on + strand at 35.992 kb on - strand at 35.992 kb on - strand at 35.992 kb on - strand at 35.992 kb on - strand at 35.992 kb on - strand at 35.994 kb on + strand at 35.994 kb on + strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 35.995 kb on - strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.033 kb on + strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.034 kb on - strand at 36.063 kb on - strand at 36.102 kb on + strand, within DDA3937_RS00155 at 36.102 kb on + strand, within DDA3937_RS00155 at 36.102 kb on + strand, within DDA3937_RS00155 at 36.174 kb on - strand, within DDA3937_RS00155 at 36.176 kb on + strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.177 kb on - strand, within DDA3937_RS00155 at 36.227 kb on - strand, within DDA3937_RS00155 at 36.308 kb on + strand, within DDA3937_RS00155 at 36.309 kb on - strand, within DDA3937_RS00155 at 36.413 kb on + strand, within DDA3937_RS00155 at 36.414 kb on - strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.483 kb on + strand, within DDA3937_RS00155 at 36.484 kb on - strand, within DDA3937_RS00155 at 36.517 kb on + strand, within DDA3937_RS00155 at 36.517 kb on + strand, within DDA3937_RS00155 at 36.517 kb on + strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.518 kb on - strand, within DDA3937_RS00155 at 36.531 kb on + strand, within DDA3937_RS00155 at 36.532 kb on - strand, within DDA3937_RS00155 at 36.548 kb on + strand, within DDA3937_RS00155 at 36.551 kb on + strand, within DDA3937_RS00155 at 36.551 kb on + strand, within DDA3937_RS00155 at 36.552 kb on - strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.590 kb on + strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.591 kb on - strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.686 kb on + strand, within DDA3937_RS00155 at 36.687 kb on - strand, within DDA3937_RS00155 at 36.687 kb on - strand, within DDA3937_RS00155 at 36.839 kb on + strand at 36.840 kb on - strand at 36.863 kb on + strand at 36.863 kb on + strand at 36.863 kb on + strand at 36.867 kb on + strand at 36.867 kb on + strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.868 kb on - strand at 36.978 kb on + strand at 36.978 kb on + strand at 36.978 kb on + strand at 36.978 kb on + strand at 36.979 kb on - strand at 36.995 kb on - strand at 37.277 kb on + strand, within DDA3937_RS00160 at 37.278 kb on - strand, within DDA3937_RS00160 at 37.562 kb on + strand, within DDA3937_RS00160 at 37.654 kb on + strand, within DDA3937_RS00160 at 37.654 kb on + strand, within DDA3937_RS00160 at 37.654 kb on + strand, within DDA3937_RS00160 at 37.655 kb on - strand, within DDA3937_RS00160 at 37.655 kb on - strand, within DDA3937_RS00160 at 37.823 kb on + strand, within DDA3937_RS00160 at 37.824 kb on - strand, within DDA3937_RS00160
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 35,098 + DDA3937_RS00145 0.33 -0.1 35,098 + DDA3937_RS00145 0.33 -0.6 35,099 - DDA3937_RS00145 0.33 -0.7 35,099 - DDA3937_RS00145 0.33 +0.2 35,145 + DDA3937_RS00145 0.40 -0.0 35,146 - DDA3937_RS00145 0.41 +0.7 35,146 - DDA3937_RS00145 0.41 -0.1 35,151 + DDA3937_RS00145 0.41 +0.4 35,152 - DDA3937_RS00145 0.42 -2.6 35,152 - DDA3937_RS00145 0.42 +0.1 35,152 - DDA3937_RS00145 0.42 +0.5 35,152 - DDA3937_RS00145 0.42 -0.0 35,152 - DDA3937_RS00145 0.42 -0.2 35,171 - DDA3937_RS00145 0.45 -2.3 35,208 + DDA3937_RS00145 0.51 -0.3 35,209 - DDA3937_RS00145 0.51 -0.7 35,209 - DDA3937_RS00145 0.51 -0.3 35,211 + DDA3937_RS00145 0.51 -0.1 35,211 + DDA3937_RS00145 0.51 +0.2 35,211 + DDA3937_RS00145 0.51 -2.3 35,211 + DDA3937_RS00145 0.51 +1.0 35,212 - DDA3937_RS00145 0.51 +1.0 35,212 - DDA3937_RS00145 0.51 +0.4 35,212 - DDA3937_RS00145 0.51 -2.9 35,212 - DDA3937_RS00145 0.51 +0.4 35,212 - DDA3937_RS00145 0.51 +0.5 35,212 - DDA3937_RS00145 0.51 +2.2 35,221 + DDA3937_RS00145 0.53 -0.5 35,221 + DDA3937_RS00145 0.53 +0.3 35,291 + DDA3937_RS00145 0.64 -0.4 35,336 + DDA3937_RS00145 0.72 -0.3 35,337 - DDA3937_RS00145 0.72 -1.3 35,337 - DDA3937_RS00145 0.72 -1.2 35,440 + DDA3937_RS00145 0.89 -1.0 35,440 + DDA3937_RS00145 0.89 +0.4 35,440 + DDA3937_RS00145 0.89 +0.1 35,441 - DDA3937_RS00145 0.89 -0.0 35,495 - -1.0 35,495 - -0.0 35,507 + -1.6 35,508 - -1.1 35,516 + -0.2 35,516 + -0.5 35,517 - +2.1 35,527 + -0.2 35,561 - DDA3937_RS00150 0.10 -1.3 35,572 + DDA3937_RS00150 0.13 +0.0 35,602 + DDA3937_RS00150 0.19 -1.0 35,602 + DDA3937_RS00150 0.19 -0.2 35,615 - DDA3937_RS00150 0.22 -0.1 35,753 + DDA3937_RS00150 0.54 -0.5 35,832 + DDA3937_RS00150 0.72 -1.8 35,832 + DDA3937_RS00150 0.72 -0.1 35,833 - DDA3937_RS00150 0.72 +1.6 35,838 + DDA3937_RS00150 0.73 -0.3 35,838 + DDA3937_RS00150 0.73 -0.0 35,838 + DDA3937_RS00150 0.73 +0.7 35,838 + DDA3937_RS00150 0.73 -1.4 35,908 + DDA3937_RS00150 0.89 -0.5 35,908 + +1.0 35,908 + DDA3937_RS00150 0.89 +0.5 35,908 + DDA3937_RS00150 0.89 -1.8 35,909 - DDA3937_RS00150 0.89 -1.3 35,909 - DDA3937_RS00150 0.89 +0.0 35,909 - DDA3937_RS00150 0.89 -1.7 35,909 - DDA3937_RS00150 0.89 -2.0 35,909 - DDA3937_RS00150 0.89 +0.4 35,917 + -0.5 35,952 + -0.7 35,953 - -2.8 35,963 + -1.1 35,963 + +0.4 35,963 + -1.1 35,963 + +0.6 35,963 + -0.1 35,963 + -1.3 35,964 - -0.6 35,964 - +1.0 35,964 - -1.6 35,964 - +0.3 35,964 - -0.6 35,964 - -0.1 35,964 - -1.3 35,964 - -0.6 35,987 + -1.9 35,987 + +1.4 35,987 + -0.3 35,987 + -0.8 35,988 - -1.9 35,991 + -1.3 35,991 + -0.4 35,992 - +0.2 35,992 - -0.4 35,992 - -1.0 35,992 - -1.2 35,992 - -2.5 35,994 + -0.8 35,994 + -2.0 35,995 - +0.1 35,995 - -0.0 35,995 - +0.3 35,995 - +1.0 35,995 - -0.7 36,033 + +1.3 36,033 + -0.0 36,033 + -1.3 36,033 + -0.6 36,033 + +1.9 36,033 + -1.8 36,034 - -0.4 36,034 - -1.8 36,034 - +1.4 36,034 - +0.1 36,063 - -0.3 36,102 + DDA3937_RS00155 0.12 -1.7 36,102 + DDA3937_RS00155 0.12 +0.2 36,102 + DDA3937_RS00155 0.12 -0.3 36,174 - DDA3937_RS00155 0.20 -1.6 36,176 + DDA3937_RS00155 0.20 +1.7 36,177 - DDA3937_RS00155 0.20 +0.2 36,177 - DDA3937_RS00155 0.20 +1.1 36,177 - DDA3937_RS00155 0.20 -0.6 36,227 - DDA3937_RS00155 0.25 -0.0 36,308 + DDA3937_RS00155 0.34 -0.6 36,309 - DDA3937_RS00155 0.34 -1.6 36,413 + DDA3937_RS00155 0.45 -0.6 36,414 - DDA3937_RS00155 0.45 -0.6 36,483 + DDA3937_RS00155 0.53 -0.2 36,483 + DDA3937_RS00155 0.53 -2.0 36,483 + DDA3937_RS00155 0.53 -1.8 36,483 + DDA3937_RS00155 0.53 -1.2 36,484 - DDA3937_RS00155 0.53 -0.2 36,517 + DDA3937_RS00155 0.56 -1.5 36,517 + DDA3937_RS00155 0.56 -0.5 36,517 + DDA3937_RS00155 0.56 -1.8 36,518 - DDA3937_RS00155 0.56 -1.7 36,518 - DDA3937_RS00155 0.56 -1.6 36,518 - DDA3937_RS00155 0.56 -0.0 36,518 - DDA3937_RS00155 0.56 -1.3 36,531 + DDA3937_RS00155 0.58 -1.9 36,532 - DDA3937_RS00155 0.58 -0.2 36,548 + DDA3937_RS00155 0.59 -2.0 36,551 + DDA3937_RS00155 0.60 -0.2 36,551 + DDA3937_RS00155 0.60 -0.0 36,552 - DDA3937_RS00155 0.60 -1.9 36,590 + DDA3937_RS00155 0.64 +0.4 36,590 + DDA3937_RS00155 0.64 -1.0 36,590 + DDA3937_RS00155 0.64 -0.0 36,590 + DDA3937_RS00155 0.64 -0.5 36,590 + DDA3937_RS00155 0.64 -2.0 36,590 + DDA3937_RS00155 0.64 +0.1 36,590 + DDA3937_RS00155 0.64 -1.7 36,590 + DDA3937_RS00155 0.64 -2.2 36,591 - DDA3937_RS00155 0.64 -2.2 36,591 - DDA3937_RS00155 0.64 -2.0 36,591 - DDA3937_RS00155 0.64 -2.0 36,591 - DDA3937_RS00155 0.64 -0.6 36,591 - DDA3937_RS00155 0.64 -2.0 36,591 - DDA3937_RS00155 0.64 +0.2 36,591 - DDA3937_RS00155 0.64 -1.3 36,591 - -0.0 36,591 - DDA3937_RS00155 0.64 -2.3 36,591 - -1.0 36,591 - DDA3937_RS00155 0.64 -1.0 36,591 - DDA3937_RS00155 0.64 -0.8 36,591 - DDA3937_RS00155 0.64 -0.2 36,686 + DDA3937_RS00155 0.74 -0.3 36,686 + DDA3937_RS00155 0.74 +0.1 36,686 + DDA3937_RS00155 0.74 +0.4 36,686 + DDA3937_RS00155 0.74 -2.0 36,686 + DDA3937_RS00155 0.74 -1.0 36,686 + DDA3937_RS00155 0.74 -0.6 36,687 - DDA3937_RS00155 0.74 -0.0 36,687 - DDA3937_RS00155 0.74 -3.1 36,839 + -1.0 36,840 - -1.0 36,863 + -0.6 36,863 + -2.0 36,863 + +2.2 36,867 + -0.6 36,867 + -2.0 36,868 - -0.0 36,868 - -0.4 36,868 - -0.5 36,868 - -1.1 36,868 - -1.3 36,978 + -0.6 36,978 + +0.6 36,978 + -0.1 36,978 + -0.0 36,979 - -1.3 36,995 - +0.6 37,277 + DDA3937_RS00160 0.16 -0.1 37,278 - DDA3937_RS00160 0.16 -0.3 37,562 + DDA3937_RS00160 0.33 -1.1 37,654 + DDA3937_RS00160 0.38 -0.7 37,654 + DDA3937_RS00160 0.38 +1.2 37,654 + DDA3937_RS00160 0.38 +2.0 37,655 - DDA3937_RS00160 0.38 +0.5 37,655 - DDA3937_RS00160 0.38 +0.7 37,823 + DDA3937_RS00160 0.48 -0.9 37,824 - DDA3937_RS00160 0.48 -0.8
Or see this region's nucleotide sequence