Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00035

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
6,181	-				-2.2
6,298	-				-0.6
6,328	+				-0.8
6,328	+				+0.3
6,328	+				+1.2
6,328	+				-0.5
6,328	+				-0.3
6,328	+				+0.4
6,328	+				-1.3
6,328	+				+0.6
6,328	+				+0.1
6,328	+				+0.2
6,328	+				-1.6
6,328	+				-2.0
6,328	+				+0.2
6,329	-				+1.0
6,329	-				-0.5
6,329	-				-0.0
6,329	-				+0.2
6,329	-				+0.1
6,329	-				-0.4
6,329	-				+0.2
6,329	-				+1.6
6,329	-				-0.3
6,329	-				-0.6
6,329	-				-1.3
6,329	-				-2.0
6,329	-				-0.6
6,329	-				+0.5
6,329	-				-0.2
6,329	-				-0.3
6,329	-				-1.3
6,329	-				-0.0
6,329	-				-2.2
6,335	+				-0.6
6,336	-				-1.6
6,487	+				+0.1
6,488	-				-0.0
6,498	+				+0.4
6,498	+				-0.4
6,575	+				-0.6
6,616	+				+0.7
6,621	+				+0.7
6,621	+				+1.0
6,621	+				-1.9
6,622	-				+0.1
6,622	-				+0.4
6,622	-				-1.0
6,661	-				+0.6
6,687	+				+1.3
6,687	+				+0.6
6,687	+				-0.6
6,688	-				-0.6
6,691	+				-1.5
6,712	+				+0.7
6,712	+				-0.4
6,713	-				-1.0
6,713	-				+0.5
6,716	+				+1.4
6,725	+				+0.8
6,725	+				+0.4
6,755	+		DDA3937_RS00030	0.14	+0.4
6,755	+		DDA3937_RS00030	0.14	-0.0
6,756	-		DDA3937_RS00030	0.14	-2.4
6,756	-		DDA3937_RS00030	0.14	-0.1
6,756	-				-0.0
6,756	-		DDA3937_RS00030	0.14	-0.8
6,756	-		DDA3937_RS00030	0.14	-0.5
6,756	-		DDA3937_RS00030	0.14	+0.4
6,756	-		DDA3937_RS00030	0.14	+0.5
6,926	+		DDA3937_RS00030	0.55	+0.4
6,926	+		DDA3937_RS00030	0.55	+1.1
6,926	+		DDA3937_RS00030	0.55	-1.1
6,927	-		DDA3937_RS00030	0.55	-0.1
6,927	-		DDA3937_RS00030	0.55	-0.6
6,958	+		DDA3937_RS00030	0.62	+0.6
6,958	+		DDA3937_RS00030	0.62	-0.4
6,959	-		DDA3937_RS00030	0.63	+1.0
6,959	-		DDA3937_RS00030	0.63	-0.3
6,959	-		DDA3937_RS00030	0.63	+0.8
6,959	-		DDA3937_RS00030	0.63	-0.9
6,986	+		DDA3937_RS00030	0.69	-0.8
6,986	+		DDA3937_RS00030	0.69	-1.3
6,987	-		DDA3937_RS00030	0.69	+1.0
6,989	+		DDA3937_RS00030	0.70	-1.8
6,989	+		DDA3937_RS00030	0.70	+0.4
6,989	+		DDA3937_RS00030	0.70	-0.4
6,989	+		DDA3937_RS00030	0.70	-0.6
6,989	+		DDA3937_RS00030	0.70	-0.9
6,990	-		DDA3937_RS00030	0.70	+0.5
6,990	-		DDA3937_RS00030	0.70	+2.7
7,002	+		DDA3937_RS00030	0.73	-0.0
7,002	+		DDA3937_RS00030	0.73	-0.9
7,002	+		DDA3937_RS00030	0.73	-0.6
7,002	+		DDA3937_RS00030	0.73	+1.0
7,002	+		DDA3937_RS00030	0.73	-0.3
7,002	+		DDA3937_RS00030	0.73	-1.9
7,003	-		DDA3937_RS00030	0.73	-1.0
7,003	-		DDA3937_RS00030	0.73	-1.4
7,003	-		DDA3937_RS00030	0.73	+0.3
7,003	-		DDA3937_RS00030	0.73	-0.3
7,003	-		DDA3937_RS00030	0.73	-0.1
7,003	-		DDA3937_RS00030	0.73	+0.4
7,003	-		DDA3937_RS00030	0.73	+0.9
7,053	-		DDA3937_RS00030	0.85	-1.1
7,119	-				+1.3
7,133	+				+0.4
7,133	+				-0.1
7,204	+				+0.2
7,205	-				+0.7
7,269	-				+1.0
7,269	-				+1.8
7,269	-				-0.3
7,269	-				-0.0
7,269	-				-0.2
7,272	+				-0.6
7,273	-				-1.3
7,273	-				-2.0
7,273	-				+2.0
7,282	+		DDA3937_RS00035	0.11	-1.6
7,440	+		DDA3937_RS00035	0.21	+0.4
7,440	+		DDA3937_RS00035	0.21	-0.3
7,440	+		DDA3937_RS00035	0.21	-0.0
7,441	-		DDA3937_RS00035	0.21	-0.3
7,441	-		DDA3937_RS00035	0.21	-0.3
7,477	+		DDA3937_RS00035	0.24	+1.2
7,477	+		DDA3937_RS00035	0.24	-0.3
7,477	+		DDA3937_RS00035	0.24	-1.6
7,477	+		DDA3937_RS00035	0.24	+0.7
7,478	-				+1.7
7,520	-		DDA3937_RS00035	0.26	+1.1
7,614	+		DDA3937_RS00035	0.33	-0.2
7,614	+		DDA3937_RS00035	0.33	+0.2
7,615	-		DDA3937_RS00035	0.33	+0.5
7,675	-		DDA3937_RS00035	0.37	-0.4
7,675	-		DDA3937_RS00035	0.37	-0.0
7,708	+		DDA3937_RS00035	0.39	-0.7
7,708	+		DDA3937_RS00035	0.39	-1.2
7,708	+		DDA3937_RS00035	0.39	-0.6
7,708	+		DDA3937_RS00035	0.39	-1.1
7,708	+		DDA3937_RS00035	0.39	-0.0
7,708	+		DDA3937_RS00035	0.39	-0.5
7,708	+		DDA3937_RS00035	0.39	-2.2
7,709	-		DDA3937_RS00035	0.39	-0.3
7,709	-		DDA3937_RS00035	0.39	-0.5
7,709	-		DDA3937_RS00035	0.39	-0.1
7,709	-		DDA3937_RS00035	0.39	-1.2
7,709	-		DDA3937_RS00035	0.39	-2.0
7,709	-		DDA3937_RS00035	0.39	+1.7
7,709	-		DDA3937_RS00035	0.39	-0.7
7,709	-		DDA3937_RS00035	0.39	-1.5
7,709	-		DDA3937_RS00035	0.39	-1.0
7,709	-		DDA3937_RS00035	0.39	+1.0
7,710	+		DDA3937_RS00035	0.39	-2.2
7,710	+		DDA3937_RS00035	0.39	+0.2
7,710	+		DDA3937_RS00035	0.39	+0.5
7,711	-		DDA3937_RS00035	0.39	-1.0
7,711	-		DDA3937_RS00035	0.39	-0.7
7,711	-		DDA3937_RS00035	0.39	+1.6
7,711	-		DDA3937_RS00035	0.39	+0.4
7,711	-		DDA3937_RS00035	0.39	-1.9
7,711	-		DDA3937_RS00035	0.39	-0.0
7,711	-		DDA3937_RS00035	0.39	+1.9
7,842	+		DDA3937_RS00035	0.48	-1.2
7,843	-		DDA3937_RS00035	0.48	+0.2
8,017	+		DDA3937_RS00035	0.59	+0.1
8,043	+		DDA3937_RS00035	0.61	-0.0
8,043	+		DDA3937_RS00035	0.61	+0.3
8,113	+		DDA3937_RS00035	0.66	-1.0
8,113	+		DDA3937_RS00035	0.66	-1.2
8,114	-		DDA3937_RS00035	0.66	-1.3
8,114	-		DDA3937_RS00035	0.66	+0.3
8,115	+		DDA3937_RS00035	0.66	-0.9
8,115	+		DDA3937_RS00035	0.66	-1.0
8,115	+		DDA3937_RS00035	0.66	-1.7
8,116	-		DDA3937_RS00035	0.66	-0.9
8,116	-		DDA3937_RS00035	0.66	+0.0
8,116	-		DDA3937_RS00035	0.66	-0.3
8,194	+		DDA3937_RS00035	0.71	-0.7
8,268	+		DDA3937_RS00035	0.76	-0.1
8,268	+		DDA3937_RS00035	0.76	-0.3
8,268	+		DDA3937_RS00035	0.76	-0.4
8,268	+		DDA3937_RS00035	0.76	-1.7
8,269	-		DDA3937_RS00035	0.76	-0.5
8,269	-		DDA3937_RS00035	0.76	+1.2
8,269	-		DDA3937_RS00035	0.76	+0.2
8,425	+		DDA3937_RS00035	0.86	-0.1
8,432	+		DDA3937_RS00035	0.87	+0.2
8,517	+				+0.2
8,602	-				-0.5
8,602	-				-0.0
8,615	+				+0.4
8,626	+				+0.5
8,627	-				-0.6
8,627	-				+0.3
8,627	-				+1.0
8,627	-				+0.3
8,650	+				-0.1
8,650	+				+0.0
8,651	-				-1.3
8,651	-				-0.7
8,862	+		DDA3937_RS00040	0.23	-0.8
8,938	-		DDA3937_RS00040	0.31	+0.1
9,065	+		DDA3937_RS00040	0.44	-0.9
9,066	-				+1.0
9,151	-		DDA3937_RS00040	0.53	-0.8
9,180	+		DDA3937_RS00040	0.56	-0.0
9,180	+		DDA3937_RS00040	0.56	+0.3
9,197	+		DDA3937_RS00040	0.58	-0.4
9,197	+		DDA3937_RS00040	0.58	-0.2
9,197	+		DDA3937_RS00040	0.58	-0.9
9,197	+		DDA3937_RS00040	0.58	-0.2
9,197	+		DDA3937_RS00040	0.58	-0.3
9,197	+		DDA3937_RS00040	0.58	+0.4
9,198	-		DDA3937_RS00040	0.58	-0.2
9,212	-		DDA3937_RS00040	0.59	+0.5
9,212	-		DDA3937_RS00040	0.59	+1.1
9,227	+		DDA3937_RS00040	0.61	+0.2
9,227	+		DDA3937_RS00040	0.61	-0.2
9,227	+		DDA3937_RS00040	0.61	-0.5
9,227	+		DDA3937_RS00040	0.61	+0.5
9,227	+		DDA3937_RS00040	0.61	-0.8
9,228	-		DDA3937_RS00040	0.61	-0.4
9,228	-		DDA3937_RS00040	0.61	-1.3
9,228	-		DDA3937_RS00040	0.61	-1.0
9,229	+		DDA3937_RS00040	0.61	-0.8
9,229	+		DDA3937_RS00040	0.61	-0.7
9,229	+		DDA3937_RS00040	0.61	-1.4
9,229	+		DDA3937_RS00040	0.61	-2.4
9,229	+		DDA3937_RS00040	0.61	-0.3
9,229	+		DDA3937_RS00040	0.61	-1.5
9,229	+		DDA3937_RS00040	0.61	-0.7
9,229	+		DDA3937_RS00040	0.61	-0.3
9,229	+		DDA3937_RS00040	0.61	-0.3
9,229	+		DDA3937_RS00040	0.61	+0.1
9,230	-		DDA3937_RS00040	0.61	+0.9
9,230	-		DDA3937_RS00040	0.61	+1.1
9,230	-		DDA3937_RS00040	0.61	+0.8
9,230	-		DDA3937_RS00040	0.61	-0.2
9,230	-		DDA3937_RS00040	0.61	-1.0
9,230	-		DDA3937_RS00040	0.61	+0.1
9,230	-		DDA3937_RS00040	0.61	+0.8
9,230	-				+1.0
9,230	-		DDA3937_RS00040	0.61	+0.1
9,230	-		DDA3937_RS00040	0.61	+0.4
9,233	+		DDA3937_RS00040	0.62	-1.7
9,233	+		DDA3937_RS00040	0.62	-0.6
9,233	+		DDA3937_RS00040	0.62	-1.6
9,233	+		DDA3937_RS00040	0.62	-0.0
9,233	+		DDA3937_RS00040	0.62	-0.6
9,233	+		DDA3937_RS00040	0.62	-0.3
9,233	+		DDA3937_RS00040	0.62	+0.1
9,234	-		DDA3937_RS00040	0.62	+0.3
9,234	-				+0.6
9,286	+		DDA3937_RS00040	0.67	+0.6
9,287	-		DDA3937_RS00040	0.67	+0.4
9,287	-		DDA3937_RS00040	0.67	-1.1
9,287	-		DDA3937_RS00040	0.67	-0.9
9,287	-		DDA3937_RS00040	0.67	+0.6
9,305	+		DDA3937_RS00040	0.69	-1.5
9,305	+		DDA3937_RS00040	0.69	-0.6
9,305	+		DDA3937_RS00040	0.69	-1.2
9,306	-		DDA3937_RS00040	0.69	+1.0
9,351	+		DDA3937_RS00040	0.74	-2.4
9,351	+		DDA3937_RS00040	0.74	-0.4
9,352	-		DDA3937_RS00040	0.74	+0.9
9,352	-		DDA3937_RS00040	0.74	+0.3
9,352	-		DDA3937_RS00040	0.74	-0.5
9,352	-		DDA3937_RS00040	0.74	-1.0
9,392	+		DDA3937_RS00040	0.78	+0.1
9,471	+		DDA3937_RS00040	0.86	-1.0
9,511	+				+0.3
9,511	+				-1.4
9,512	-				-1.0
9,533	+				-0.3
9,533	+				-1.6
9,533	+				-0.6
9,534	-				+0.6
9,534	-				-0.8
9,534	-				-0.5
9,534	-				-0.8
9,534	-				+0.1
9,536	+				-0.0
9,536	+				-1.9
9,537	-				+0.8
9,537	-				-0.0
9,583	-				+0.8
9,586	+				+1.0
9,586	+				+0.3
9,586	+				-0.7
9,587	-				-1.1
9,587	-				-0.9
9,598	+				-1.6
9,599	-				+0.5
9,599	-				-1.8
9,599	-				+1.4
9,599	-				-0.4
9,603	-				-1.9
9,603	-				-0.3