Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00005 and DDA3937_RS00010 are separated by 91 nucleotides DDA3937_RS00010 and DDA3937_RS00015 are separated by 146 nucleotides
DDA3937_RS00005: DDA3937_RS00005 - FMN-binding protein MioC, at 32 to 475
_RS00005
DDA3937_RS00010: DDA3937_RS00010 - transcriptional regulator AsnC, at 567 to 1,031
_RS00010
DDA3937_RS00015: DDA3937_RS00015 - ATPase RavA stimulator ViaA, at 1,178 to 2,653
_RS00015
Position (kb) 0
1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 0.033 kb on + strand at 0.101 kb on - strand, within DDA3937_RS00005 at 0.101 kb on - strand, within DDA3937_RS00005 at 0.101 kb on - strand, within DDA3937_RS00005 at 0.118 kb on + strand, within DDA3937_RS00005 at 0.118 kb on + strand, within DDA3937_RS00005 at 0.119 kb on - strand, within DDA3937_RS00005 at 0.119 kb on - strand, within DDA3937_RS00005 at 0.119 kb on - strand, within DDA3937_RS00005 at 0.192 kb on + strand, within DDA3937_RS00005 at 0.267 kb on + strand, within DDA3937_RS00005 at 0.267 kb on + strand, within DDA3937_RS00005 at 0.268 kb on - strand, within DDA3937_RS00005 at 0.426 kb on + strand, within DDA3937_RS00005 at 0.426 kb on + strand, within DDA3937_RS00005 at 0.426 kb on + strand, within DDA3937_RS00005 at 0.426 kb on + strand, within DDA3937_RS00005 at 0.427 kb on - strand, within DDA3937_RS00005 at 0.427 kb on - strand, within DDA3937_RS00005 at 0.463 kb on + strand at 0.475 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.510 kb on + strand at 0.511 kb on - strand at 0.511 kb on - strand at 0.511 kb on - strand at 0.511 kb on - strand at 0.511 kb on - strand at 0.511 kb on - strand at 0.511 kb on - strand at 0.533 kb on + strand at 0.533 kb on + strand at 0.533 kb on + strand at 0.533 kb on + strand at 0.533 kb on + strand at 0.534 kb on - strand at 0.534 kb on - strand at 0.534 kb on - strand at 0.534 kb on - strand at 0.543 kb on + strand at 0.543 kb on + strand at 0.554 kb on + strand at 0.554 kb on + strand at 0.555 kb on - strand at 0.557 kb on + strand at 0.558 kb on - strand at 0.558 kb on - strand at 0.558 kb on - strand at 0.581 kb on + strand at 0.581 kb on + strand at 0.581 kb on + strand at 0.581 kb on + strand at 0.581 kb on + strand at 0.582 kb on - strand at 0.582 kb on - strand at 0.582 kb on - strand at 0.656 kb on + strand, within DDA3937_RS00010 at 0.656 kb on + strand, within DDA3937_RS00010 at 0.656 kb on + strand, within DDA3937_RS00010 at 0.656 kb on + strand, within DDA3937_RS00010 at 0.656 kb on + strand, within DDA3937_RS00010 at 0.656 kb on + strand, within DDA3937_RS00010 at 0.656 kb on + strand, within DDA3937_RS00010 at 0.657 kb on - strand, within DDA3937_RS00010 at 0.657 kb on - strand, within DDA3937_RS00010 at 0.657 kb on - strand, within DDA3937_RS00010 at 0.657 kb on - strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand at 0.660 kb on + strand, within DDA3937_RS00010 at 0.660 kb on + strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.661 kb on - strand, within DDA3937_RS00010 at 0.712 kb on + strand at 0.713 kb on - strand, within DDA3937_RS00010 at 0.727 kb on + strand, within DDA3937_RS00010 at 0.727 kb on + strand, within DDA3937_RS00010 at 0.727 kb on + strand, within DDA3937_RS00010 at 0.727 kb on + strand, within DDA3937_RS00010 at 0.727 kb on + strand, within DDA3937_RS00010 at 0.727 kb on + strand, within DDA3937_RS00010 at 0.727 kb on + strand, within DDA3937_RS00010 at 0.728 kb on - strand, within DDA3937_RS00010 at 0.728 kb on - strand, within DDA3937_RS00010 at 0.728 kb on - strand, within DDA3937_RS00010 at 0.728 kb on - strand, within DDA3937_RS00010 at 0.728 kb on - strand, within DDA3937_RS00010 at 0.728 kb on - strand, within DDA3937_RS00010 at 0.728 kb on - strand, within DDA3937_RS00010 at 0.728 kb on - strand, within DDA3937_RS00010 at 0.730 kb on + strand, within DDA3937_RS00010 at 0.730 kb on + strand, within DDA3937_RS00010 at 0.730 kb on + strand, within DDA3937_RS00010 at 0.731 kb on - strand, within DDA3937_RS00010 at 0.731 kb on - strand, within DDA3937_RS00010 at 0.731 kb on - strand, within DDA3937_RS00010 at 0.731 kb on - strand, within DDA3937_RS00010 at 0.781 kb on + strand, within DDA3937_RS00010 at 0.830 kb on - strand, within DDA3937_RS00010 at 0.843 kb on - strand, within DDA3937_RS00010 at 0.843 kb on - strand, within DDA3937_RS00010 at 0.953 kb on - strand, within DDA3937_RS00010 at 1.015 kb on + strand at 1.015 kb on + strand at 1.015 kb on + strand at 1.015 kb on + strand at 1.015 kb on + strand at 1.016 kb on - strand at 1.016 kb on - strand at 1.016 kb on - strand at 1.016 kb on - strand at 1.016 kb on - strand at 1.016 kb on - strand at 1.016 kb on - strand at 1.016 kb on - strand at 1.016 kb on - strand at 1.016 kb on - strand at 1.067 kb on - strand at 1.074 kb on - strand at 1.074 kb on - strand at 1.074 kb on - strand at 1.126 kb on + strand at 1.126 kb on + strand at 1.126 kb on + strand at 1.126 kb on + strand at 1.126 kb on + strand at 1.126 kb on + strand at 1.127 kb on - strand at 1.127 kb on - strand at 1.134 kb on + strand at 1.134 kb on + strand at 1.134 kb on + strand at 1.134 kb on + strand at 1.134 kb on + strand at 1.134 kb on + strand at 1.134 kb on + strand at 1.134 kb on + strand at 1.134 kb on + strand at 1.135 kb on - strand at 1.135 kb on - strand at 1.136 kb on + strand at 1.136 kb on + strand at 1.136 kb on + strand at 1.136 kb on + strand at 1.136 kb on + strand at 1.136 kb on + strand at 1.136 kb on + strand at 1.136 kb on + strand at 1.136 kb on + strand at 1.137 kb on - strand at 1.137 kb on - strand at 1.138 kb on + strand at 1.138 kb on + strand at 1.138 kb on + strand at 1.138 kb on + strand at 1.138 kb on + strand at 1.138 kb on + strand at 1.138 kb on + strand at 1.138 kb on + strand at 1.138 kb on + strand at 1.138 kb on + strand at 1.138 kb on + strand at 1.138 kb on + strand at 1.139 kb on - strand at 1.139 kb on - strand at 1.139 kb on - strand at 1.139 kb on - strand at 1.139 kb on - strand at 1.139 kb on - strand at 1.139 kb on - strand at 1.139 kb on - strand at 1.139 kb on - strand at 1.139 kb on - strand at 1.139 kb on - strand at 1.139 kb on - strand at 1.151 kb on - strand at 1.151 kb on - strand at 1.151 kb on - strand at 1.151 kb on - strand at 1.177 kb on - strand at 1.177 kb on - strand at 1.243 kb on + strand at 1.243 kb on + strand at 1.243 kb on + strand at 1.244 kb on - strand at 1.385 kb on - strand, within DDA3937_RS00015 at 1.450 kb on + strand, within DDA3937_RS00015 at 1.450 kb on + strand, within DDA3937_RS00015 at 1.450 kb on + strand, within DDA3937_RS00015 at 1.450 kb on + strand, within DDA3937_RS00015 at 1.451 kb on - strand, within DDA3937_RS00015 at 1.451 kb on - strand, within DDA3937_RS00015 at 1.451 kb on - strand, within DDA3937_RS00015 at 1.530 kb on + strand, within DDA3937_RS00015 at 1.531 kb on - strand, within DDA3937_RS00015 at 1.531 kb on - strand, within DDA3937_RS00015 at 1.531 kb on - strand, within DDA3937_RS00015 at 1.563 kb on + strand, within DDA3937_RS00015 at 1.563 kb on + strand, within DDA3937_RS00015 at 1.563 kb on + strand, within DDA3937_RS00015 at 1.563 kb on + strand, within DDA3937_RS00015 at 1.563 kb on + strand, within DDA3937_RS00015 at 1.563 kb on + strand, within DDA3937_RS00015 at 1.563 kb on + strand, within DDA3937_RS00015 at 1.563 kb on + strand, within DDA3937_RS00015 at 1.563 kb on + strand, within DDA3937_RS00015 at 1.564 kb on - strand, within DDA3937_RS00015 at 1.633 kb on + strand, within DDA3937_RS00015 at 1.634 kb on - strand, within DDA3937_RS00015 at 1.657 kb on + strand, within DDA3937_RS00015 at 1.699 kb on + strand, within DDA3937_RS00015 at 1.699 kb on + strand, within DDA3937_RS00015 at 1.699 kb on + strand, within DDA3937_RS00015 at 1.699 kb on + strand, within DDA3937_RS00015 at 1.699 kb on + strand, within DDA3937_RS00015 at 1.700 kb on - strand, within DDA3937_RS00015 at 1.700 kb on - strand, within DDA3937_RS00015 at 1.700 kb on - strand, within DDA3937_RS00015 at 1.794 kb on + strand, within DDA3937_RS00015 at 1.794 kb on + strand, within DDA3937_RS00015 at 1.795 kb on - strand, within DDA3937_RS00015 at 1.795 kb on - strand, within DDA3937_RS00015 at 1.819 kb on + strand, within DDA3937_RS00015 at 1.858 kb on + strand, within DDA3937_RS00015 at 1.858 kb on + strand, within DDA3937_RS00015 at 1.858 kb on + strand, within DDA3937_RS00015 at 1.858 kb on + strand, within DDA3937_RS00015 at 1.963 kb on + strand, within DDA3937_RS00015 at 1.963 kb on + strand, within DDA3937_RS00015 at 1.975 kb on + strand, within DDA3937_RS00015 at 1.976 kb on - strand, within DDA3937_RS00015
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 33 + -0.6 101 - DDA3937_RS00005 0.16 -0.3 101 - DDA3937_RS00005 0.16 +3.0 101 - DDA3937_RS00005 0.16 -1.0 118 + DDA3937_RS00005 0.19 -2.2 118 + DDA3937_RS00005 0.19 -1.3 119 - DDA3937_RS00005 0.20 -0.9 119 - DDA3937_RS00005 0.20 -0.4 119 - DDA3937_RS00005 0.20 -0.6 192 + DDA3937_RS00005 0.36 -0.6 267 + DDA3937_RS00005 0.53 -1.3 267 + DDA3937_RS00005 0.53 +0.3 268 - DDA3937_RS00005 0.53 +2.3 426 + DDA3937_RS00005 0.89 +2.0 426 + DDA3937_RS00005 0.89 -1.0 426 + DDA3937_RS00005 0.89 -0.2 426 + DDA3937_RS00005 0.89 -2.0 427 - DDA3937_RS00005 0.89 -1.8 427 - DDA3937_RS00005 0.89 -1.0 463 + -0.1 475 + -0.6 510 + -2.0 510 + -1.0 510 + +0.3 510 + -0.8 510 + +0.2 510 + +0.0 510 + -0.6 510 + -0.6 510 + +0.3 510 + -0.6 510 + +1.0 510 + +0.7 510 + -0.2 510 + -1.1 510 + -1.2 511 - -1.0 511 - -1.7 511 - +0.3 511 - -1.8 511 - +0.1 511 - -1.8 511 - -1.5 533 + -2.1 533 + +1.0 533 + -3.3 533 + -2.1 533 + +0.4 534 - -1.2 534 - -0.7 534 - -1.4 534 - -0.6 543 + -1.1 543 + -0.2 554 + -1.6 554 + -0.6 555 - -0.3 557 + +0.4 558 - -0.2 558 - -2.3 558 - -0.4 581 + -1.5 581 + -2.0 581 + -2.0 581 + -1.0 581 + -0.5 582 - -0.2 582 - -2.8 582 - -1.9 656 + DDA3937_RS00010 0.19 -0.9 656 + DDA3937_RS00010 0.19 +0.9 656 + DDA3937_RS00010 0.19 -1.6 656 + DDA3937_RS00010 0.19 -2.0 656 + DDA3937_RS00010 0.19 -1.0 656 + DDA3937_RS00010 0.19 -1.4 656 + DDA3937_RS00010 0.19 +0.2 657 - DDA3937_RS00010 0.19 -0.3 657 - DDA3937_RS00010 0.19 -2.6 657 - DDA3937_RS00010 0.19 -1.3 657 - DDA3937_RS00010 0.19 -1.3 660 + DDA3937_RS00010 0.20 -2.2 660 + DDA3937_RS00010 0.20 -1.3 660 + DDA3937_RS00010 0.20 +0.6 660 + DDA3937_RS00010 0.20 -3.6 660 + DDA3937_RS00010 0.20 -0.6 660 + DDA3937_RS00010 0.20 -1.3 660 + DDA3937_RS00010 0.20 -2.7 660 + DDA3937_RS00010 0.20 -2.1 660 + DDA3937_RS00010 0.20 -0.9 660 + DDA3937_RS00010 0.20 -0.4 660 + DDA3937_RS00010 0.20 -1.6 660 + DDA3937_RS00010 0.20 -0.1 660 + -2.0 660 + DDA3937_RS00010 0.20 -1.1 660 + DDA3937_RS00010 0.20 -0.5 661 - DDA3937_RS00010 0.20 +0.4 661 - DDA3937_RS00010 0.20 -2.1 661 - DDA3937_RS00010 0.20 -0.3 661 - DDA3937_RS00010 0.20 -1.6 661 - DDA3937_RS00010 0.20 +0.3 661 - DDA3937_RS00010 0.20 -2.5 661 - DDA3937_RS00010 0.20 -0.0 661 - DDA3937_RS00010 0.20 -1.5 661 - DDA3937_RS00010 0.20 -3.1 661 - DDA3937_RS00010 0.20 +3.3 661 - DDA3937_RS00010 0.20 -1.7 661 - DDA3937_RS00010 0.20 -1.3 661 - DDA3937_RS00010 0.20 +1.1 712 + -0.6 713 - DDA3937_RS00010 0.31 -0.6 727 + DDA3937_RS00010 0.34 -3.1 727 + DDA3937_RS00010 0.34 -1.1 727 + DDA3937_RS00010 0.34 -0.8 727 + DDA3937_RS00010 0.34 -0.2 727 + DDA3937_RS00010 0.34 -1.9 727 + DDA3937_RS00010 0.34 -0.5 727 + DDA3937_RS00010 0.34 -2.9 728 - DDA3937_RS00010 0.35 -2.2 728 - DDA3937_RS00010 0.35 -2.2 728 - DDA3937_RS00010 0.35 -0.6 728 - DDA3937_RS00010 0.35 -2.0 728 - DDA3937_RS00010 0.35 -3.3 728 - DDA3937_RS00010 0.35 -2.6 728 - DDA3937_RS00010 0.35 -2.9 728 - DDA3937_RS00010 0.35 -2.5 730 + DDA3937_RS00010 0.35 -2.0 730 + DDA3937_RS00010 0.35 -2.2 730 + DDA3937_RS00010 0.35 -3.3 731 - DDA3937_RS00010 0.35 -1.0 731 - DDA3937_RS00010 0.35 -1.7 731 - DDA3937_RS00010 0.35 -2.1 731 - DDA3937_RS00010 0.35 -1.9 781 + DDA3937_RS00010 0.46 -1.2 830 - DDA3937_RS00010 0.57 -1.1 843 - DDA3937_RS00010 0.59 -0.6 843 - DDA3937_RS00010 0.59 -0.8 953 - DDA3937_RS00010 0.83 -2.0 1,015 + -2.6 1,015 + -2.8 1,015 + -1.9 1,015 + -2.5 1,015 + -1.4 1,016 - +0.4 1,016 - -1.1 1,016 - -1.6 1,016 - -1.7 1,016 - -0.1 1,016 - -0.5 1,016 - +1.2 1,016 - -0.1 1,016 - -2.7 1,016 - -2.7 1,067 - +1.4 1,074 - -1.5 1,074 - +5.2 1,074 - -0.3 1,126 + -1.3 1,126 + +0.4 1,126 + +1.0 1,126 + -0.6 1,126 + -0.5 1,126 + -2.3 1,127 - -0.6 1,127 - -0.6 1,134 + -1.2 1,134 + -0.5 1,134 + +1.8 1,134 + +0.3 1,134 + +1.0 1,134 + -0.5 1,134 + -0.1 1,134 + -0.9 1,134 + -0.0 1,135 - +0.6 1,135 - -1.3 1,136 + -1.6 1,136 + -1.2 1,136 + +0.4 1,136 + -0.3 1,136 + +0.0 1,136 + -1.3 1,136 + +0.4 1,136 + +1.0 1,136 + -0.7 1,137 - +0.7 1,137 - +1.3 1,138 + +0.1 1,138 + -2.1 1,138 + -0.0 1,138 + -2.2 1,138 + -0.0 1,138 + +0.1 1,138 + -0.4 1,138 + +0.5 1,138 + -0.1 1,138 + -0.1 1,138 + -2.2 1,138 + -1.7 1,139 - +1.6 1,139 - -0.6 1,139 - -2.7 1,139 - -2.3 1,139 - -0.0 1,139 - -0.6 1,139 - +0.0 1,139 - -0.5 1,139 - -0.2 1,139 - -0.4 1,139 - +0.4 1,139 - -0.3 1,151 - -0.7 1,151 - +0.1 1,151 - +0.8 1,151 - -0.6 1,177 - +1.4 1,177 - -0.6 1,243 + +1.6 1,243 + +1.8 1,243 + -0.6 1,244 - +1.8 1,385 - DDA3937_RS00015 0.14 +0.5 1,450 + DDA3937_RS00015 0.18 +1.8 1,450 + DDA3937_RS00015 0.18 +1.2 1,450 + DDA3937_RS00015 0.18 -0.1 1,450 + DDA3937_RS00015 0.18 -1.7 1,451 - DDA3937_RS00015 0.18 +1.0 1,451 - DDA3937_RS00015 0.18 -0.8 1,451 - DDA3937_RS00015 0.18 +0.4 1,530 + DDA3937_RS00015 0.24 -0.5 1,531 - DDA3937_RS00015 0.24 -0.0 1,531 - DDA3937_RS00015 0.24 +0.0 1,531 - DDA3937_RS00015 0.24 -0.9 1,563 + DDA3937_RS00015 0.26 -2.6 1,563 + DDA3937_RS00015 0.26 -0.6 1,563 + DDA3937_RS00015 0.26 -0.2 1,563 + DDA3937_RS00015 0.26 +0.5 1,563 + DDA3937_RS00015 0.26 -0.5 1,563 + DDA3937_RS00015 0.26 -0.7 1,563 + DDA3937_RS00015 0.26 -3.2 1,563 + DDA3937_RS00015 0.26 +0.8 1,563 + DDA3937_RS00015 0.26 -0.8 1,564 - DDA3937_RS00015 0.26 -0.3 1,633 + DDA3937_RS00015 0.31 +0.7 1,634 - DDA3937_RS00015 0.31 -0.3 1,657 + DDA3937_RS00015 0.32 +0.2 1,699 + DDA3937_RS00015 0.35 -1.0 1,699 + DDA3937_RS00015 0.35 +0.4 1,699 + DDA3937_RS00015 0.35 +0.9 1,699 + DDA3937_RS00015 0.35 -0.0 1,699 + DDA3937_RS00015 0.35 +0.3 1,700 - DDA3937_RS00015 0.35 -0.7 1,700 - DDA3937_RS00015 0.35 -1.2 1,700 - DDA3937_RS00015 0.35 -0.4 1,794 + DDA3937_RS00015 0.42 +0.2 1,794 + DDA3937_RS00015 0.42 +1.4 1,795 - DDA3937_RS00015 0.42 -0.2 1,795 - DDA3937_RS00015 0.42 -1.2 1,819 + DDA3937_RS00015 0.43 +0.6 1,858 + DDA3937_RS00015 0.46 -1.0 1,858 + DDA3937_RS00015 0.46 -0.2 1,858 + DDA3937_RS00015 0.46 +2.0 1,858 + DDA3937_RS00015 0.46 +0.3 1,963 + DDA3937_RS00015 0.53 +0.3 1,963 + DDA3937_RS00015 0.53 -0.2 1,975 + DDA3937_RS00015 0.54 +0.3 1,976 - DDA3937_RS00015 0.54 -0.2
Or see this region's nucleotide sequence