Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02790 and DZA65_RS22800 overlap by 14 nucleotides DZA65_RS22800 and DZA65_RS02800 are separated by 490 nucleotides DZA65_RS02800 and DZA65_RS02805 are separated by 104 nucleotides
DZA65_RS02790: DZA65_RS02790 - DUF4868 domain-containing protein, at 601,680 to 602,630
_RS02790
DZA65_RS22800: DZA65_RS22800 - hypothetical protein, at 602,617 to 603,207
_RS22800
DZA65_RS02800: DZA65_RS02800 - helix-turn-helix transcriptional regulator, at 603,698 to 603,964
_RS02800
DZA65_RS02805: DZA65_RS02805 - helix-turn-helix transcriptional regulator, at 604,069 to 604,329
_RS02805
Position (kb) 602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 601.683 kb on + strand at 602.002 kb on - strand, within DZA65_RS02790 at 602.092 kb on + strand, within DZA65_RS02790 at 602.092 kb on + strand, within DZA65_RS02790 at 602.109 kb on + strand, within DZA65_RS02790 at 602.110 kb on - strand, within DZA65_RS02790 at 602.217 kb on - strand, within DZA65_RS02790 at 602.297 kb on - strand, within DZA65_RS02790 at 602.370 kb on - strand, within DZA65_RS02790 at 602.462 kb on - strand, within DZA65_RS02790 at 602.513 kb on + strand, within DZA65_RS02790 at 602.515 kb on + strand, within DZA65_RS02790 at 602.516 kb on - strand, within DZA65_RS02790 at 602.516 kb on - strand, within DZA65_RS02790 at 602.591 kb on + strand at 602.668 kb on + strand at 602.669 kb on - strand at 602.671 kb on - strand at 602.672 kb on + strand at 602.673 kb on - strand at 602.674 kb on + strand at 602.675 kb on - strand at 602.719 kb on - strand, within DZA65_RS22800 at 602.776 kb on - strand, within DZA65_RS22800 at 602.790 kb on + strand, within DZA65_RS22800 at 602.790 kb on + strand, within DZA65_RS22800 at 602.791 kb on - strand, within DZA65_RS22800 at 602.791 kb on - strand, within DZA65_RS22800 at 602.793 kb on - strand, within DZA65_RS22800 at 602.793 kb on - strand, within DZA65_RS22800 at 602.930 kb on + strand, within DZA65_RS22800 at 602.930 kb on + strand, within DZA65_RS22800 at 602.935 kb on + strand, within DZA65_RS22800 at 602.940 kb on + strand, within DZA65_RS22800 at 602.953 kb on - strand, within DZA65_RS22800 at 603.146 kb on + strand, within DZA65_RS22800 at 603.147 kb on - strand, within DZA65_RS22800 at 603.166 kb on + strand at 603.185 kb on - strand at 603.245 kb on - strand at 603.247 kb on + strand at 603.288 kb on + strand at 603.293 kb on - strand at 603.367 kb on + strand at 603.394 kb on + strand at 603.395 kb on - strand at 603.395 kb on - strand at 603.442 kb on + strand at 603.450 kb on - strand at 603.506 kb on - strand at 603.527 kb on - strand at 603.527 kb on - strand at 603.616 kb on - strand at 603.636 kb on + strand at 603.637 kb on - strand at 603.686 kb on - strand at 603.687 kb on + strand at 603.688 kb on - strand at 603.770 kb on - strand, within DZA65_RS02800 at 603.772 kb on - strand, within DZA65_RS02800 at 603.793 kb on + strand, within DZA65_RS02800 at 603.793 kb on + strand, within DZA65_RS02800 at 603.839 kb on + strand, within DZA65_RS02800 at 603.839 kb on + strand, within DZA65_RS02800 at 603.840 kb on - strand, within DZA65_RS02800 at 603.840 kb on - strand, within DZA65_RS02800 at 603.860 kb on + strand, within DZA65_RS02800 at 603.900 kb on - strand, within DZA65_RS02800 at 603.900 kb on - strand, within DZA65_RS02800 at 603.932 kb on + strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.933 kb on - strand, within DZA65_RS02800 at 603.964 kb on + strand at 603.964 kb on + strand at 603.964 kb on + strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.965 kb on - strand at 603.986 kb on - strand at 603.992 kb on - strand at 604.006 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.011 kb on + strand at 604.012 kb on - strand at 604.012 kb on - strand at 604.056 kb on + strand at 604.056 kb on + strand at 604.057 kb on - strand at 604.094 kb on + strand at 604.094 kb on + strand at 604.095 kb on - strand, within DZA65_RS02805 at 604.129 kb on + strand, within DZA65_RS02805 at 604.130 kb on - strand, within DZA65_RS02805 at 604.137 kb on - strand, within DZA65_RS02805 at 604.142 kb on + strand, within DZA65_RS02805 at 604.143 kb on - strand, within DZA65_RS02805 at 604.158 kb on + strand, within DZA65_RS02805 at 604.158 kb on + strand, within DZA65_RS02805 at 604.159 kb on - strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.204 kb on + strand, within DZA65_RS02805 at 604.205 kb on - strand, within DZA65_RS02805
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 601,683 + -0.5 602,002 - DZA65_RS02790 0.34 -0.7 602,092 + DZA65_RS02790 0.43 +0.7 602,092 + DZA65_RS02790 0.43 +0.1 602,109 + DZA65_RS02790 0.45 -0.3 602,110 - DZA65_RS02790 0.45 -1.6 602,217 - DZA65_RS02790 0.56 -0.5 602,297 - DZA65_RS02790 0.65 -0.1 602,370 - DZA65_RS02790 0.73 +1.3 602,462 - DZA65_RS02790 0.82 -1.3 602,513 + DZA65_RS02790 0.88 -3.1 602,515 + DZA65_RS02790 0.88 +0.1 602,516 - DZA65_RS02790 0.88 -0.3 602,516 - DZA65_RS02790 0.88 +1.5 602,591 + +0.1 602,668 + -0.3 602,669 - +0.6 602,671 - -1.2 602,672 + +0.1 602,673 - +1.3 602,674 + -0.1 602,675 - -1.0 602,719 - DZA65_RS22800 0.17 -0.3 602,776 - DZA65_RS22800 0.27 -0.0 602,790 + DZA65_RS22800 0.29 +0.1 602,790 + DZA65_RS22800 0.29 +0.5 602,791 - DZA65_RS22800 0.29 -0.3 602,791 - DZA65_RS22800 0.29 +0.0 602,793 - DZA65_RS22800 0.30 -0.1 602,793 - DZA65_RS22800 0.30 -0.9 602,930 + DZA65_RS22800 0.53 -0.3 602,930 + DZA65_RS22800 0.53 +0.1 602,935 + DZA65_RS22800 0.54 -0.1 602,940 + DZA65_RS22800 0.55 -0.3 602,953 - DZA65_RS22800 0.57 -0.4 603,146 + DZA65_RS22800 0.90 -0.5 603,147 - DZA65_RS22800 0.90 -2.2 603,166 + -0.5 603,185 - -1.0 603,245 - -0.7 603,247 + -0.1 603,288 + +0.2 603,293 - -0.1 603,367 + +0.7 603,394 + -0.8 603,395 - -1.0 603,395 - +0.3 603,442 + +0.7 603,450 - -1.9 603,506 - -0.0 603,527 - +0.0 603,527 - -0.2 603,616 - -0.8 603,636 + -0.9 603,637 - +0.8 603,686 - +0.5 603,687 + -0.6 603,688 - -0.0 603,770 - DZA65_RS02800 0.27 +0.2 603,772 - DZA65_RS02800 0.28 +1.6 603,793 + DZA65_RS02800 0.36 +0.8 603,793 + DZA65_RS02800 0.36 -0.4 603,839 + DZA65_RS02800 0.53 -0.4 603,839 + DZA65_RS02800 0.53 +0.7 603,840 - DZA65_RS02800 0.53 -0.7 603,840 - DZA65_RS02800 0.53 +0.3 603,860 + DZA65_RS02800 0.61 -0.9 603,900 - DZA65_RS02800 0.76 -0.9 603,900 - DZA65_RS02800 0.76 +1.7 603,932 + DZA65_RS02800 0.88 +0.1 603,933 - DZA65_RS02800 0.88 +1.0 603,933 - DZA65_RS02800 0.88 +0.2 603,933 - DZA65_RS02800 0.88 +0.7 603,964 + +0.1 603,964 + +0.7 603,964 + +0.3 603,965 - +0.2 603,965 - -1.1 603,965 - +0.3 603,965 - -0.2 603,965 - -0.7 603,986 - +2.1 603,992 - -0.4 604,006 + -0.1 604,011 + -0.4 604,011 + +1.3 604,011 + -2.9 604,011 + +0.2 604,011 + +0.3 604,012 - -0.9 604,012 - -1.5 604,056 + -0.4 604,056 + -1.1 604,057 - -0.0 604,094 + +0.6 604,094 + +1.3 604,095 - DZA65_RS02805 0.10 -1.3 604,129 + DZA65_RS02805 0.23 -1.4 604,130 - DZA65_RS02805 0.23 -0.4 604,137 - DZA65_RS02805 0.26 -2.3 604,142 + DZA65_RS02805 0.28 -1.9 604,143 - DZA65_RS02805 0.28 +0.3 604,158 + DZA65_RS02805 0.34 -2.2 604,158 + DZA65_RS02805 0.34 -1.4 604,159 - DZA65_RS02805 0.34 +0.5 604,204 + DZA65_RS02805 0.52 -1.3 604,204 + DZA65_RS02805 0.52 -0.4 604,204 + DZA65_RS02805 0.52 -0.1 604,204 + DZA65_RS02805 0.52 -0.5 604,204 + -1.5 604,204 + DZA65_RS02805 0.52 -0.2 604,204 + DZA65_RS02805 0.52 +0.5 604,204 + DZA65_RS02805 0.52 -0.3 604,205 - DZA65_RS02805 0.52 +0.4
Or see this region's nucleotide sequence