Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS21065 and DZA65_RS21075 are separated by 173 nucleotides DZA65_RS21075 and DZA65_RS21080 are separated by 369 nucleotides
DZA65_RS21065: DZA65_RS21065 - AbrB family transcriptional regulator, at 4,554,432 to 4,555,490
_RS21065
DZA65_RS21075: DZA65_RS21075 - magnesium/cobalt transporter CorA, at 4,555,664 to 4,556,614
_RS21075
DZA65_RS21080: DZA65_RS21080 - DNA helicase II, at 4,556,984 to 4,559,146
_RS21080
Position (kb) 4555
4556
4557 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4554.680 kb on + strand, within DZA65_RS21065 at 4554.681 kb on - strand, within DZA65_RS21065 at 4554.772 kb on + strand, within DZA65_RS21065 at 4554.772 kb on + strand, within DZA65_RS21065 at 4554.787 kb on - strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.804 kb on + strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.805 kb on - strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.828 kb on + strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.829 kb on - strand, within DZA65_RS21065 at 4554.832 kb on - strand at 4554.832 kb on - strand, within DZA65_RS21065 at 4554.832 kb on - strand, within DZA65_RS21065 at 4554.875 kb on + strand, within DZA65_RS21065 at 4554.875 kb on + strand, within DZA65_RS21065 at 4554.875 kb on + strand, within DZA65_RS21065 at 4554.875 kb on + strand, within DZA65_RS21065 at 4554.905 kb on + strand, within DZA65_RS21065 at 4554.905 kb on + strand, within DZA65_RS21065 at 4554.905 kb on + strand, within DZA65_RS21065 at 4554.905 kb on + strand, within DZA65_RS21065 at 4554.906 kb on - strand, within DZA65_RS21065 at 4554.971 kb on + strand, within DZA65_RS21065 at 4555.039 kb on - strand, within DZA65_RS21065 at 4555.049 kb on - strand, within DZA65_RS21065 at 4555.049 kb on - strand, within DZA65_RS21065 at 4555.049 kb on - strand, within DZA65_RS21065 at 4555.164 kb on - strand, within DZA65_RS21065 at 4555.164 kb on - strand, within DZA65_RS21065 at 4555.165 kb on + strand, within DZA65_RS21065 at 4555.165 kb on + strand, within DZA65_RS21065 at 4555.165 kb on + strand, within DZA65_RS21065 at 4555.165 kb on + strand, within DZA65_RS21065 at 4555.166 kb on - strand, within DZA65_RS21065 at 4555.220 kb on + strand, within DZA65_RS21065 at 4555.220 kb on + strand, within DZA65_RS21065 at 4555.220 kb on + strand, within DZA65_RS21065 at 4555.220 kb on + strand, within DZA65_RS21065 at 4555.220 kb on + strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.221 kb on - strand, within DZA65_RS21065 at 4555.224 kb on + strand, within DZA65_RS21065 at 4555.224 kb on + strand, within DZA65_RS21065 at 4555.224 kb on + strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.225 kb on - strand, within DZA65_RS21065 at 4555.308 kb on - strand, within DZA65_RS21065 at 4555.308 kb on - strand, within DZA65_RS21065 at 4555.334 kb on + strand, within DZA65_RS21065 at 4555.411 kb on + strand at 4555.411 kb on + strand at 4555.411 kb on + strand at 4555.411 kb on + strand at 4555.412 kb on - strand at 4555.412 kb on - strand at 4555.412 kb on - strand at 4555.412 kb on - strand at 4555.504 kb on + strand at 4555.504 kb on + strand at 4555.504 kb on + strand at 4555.504 kb on + strand at 4555.504 kb on + strand at 4555.505 kb on - strand at 4555.505 kb on - strand at 4555.505 kb on - strand at 4555.505 kb on - strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.572 kb on + strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.573 kb on - strand at 4555.690 kb on - strand at 4555.695 kb on + strand at 4555.725 kb on - strand at 4555.783 kb on + strand, within DZA65_RS21075 at 4555.784 kb on - strand, within DZA65_RS21075 at 4555.784 kb on - strand, within DZA65_RS21075 at 4555.788 kb on + strand, within DZA65_RS21075 at 4555.789 kb on - strand, within DZA65_RS21075 at 4556.103 kb on + strand, within DZA65_RS21075 at 4556.272 kb on - strand, within DZA65_RS21075 at 4556.310 kb on + strand, within DZA65_RS21075 at 4556.310 kb on + strand, within DZA65_RS21075 at 4556.376 kb on + strand, within DZA65_RS21075 at 4556.776 kb on - strand at 4556.776 kb on - strand at 4556.795 kb on - strand at 4556.795 kb on - strand at 4556.795 kb on - strand at 4556.795 kb on - strand at 4556.802 kb on - strand at 4556.807 kb on - strand at 4556.874 kb on - strand at 4556.915 kb on + strand at 4556.915 kb on + strand at 4556.915 kb on + strand at 4556.915 kb on + strand at 4556.915 kb on + strand at 4556.916 kb on - strand at 4556.916 kb on - strand at 4556.916 kb on - strand at 4556.932 kb on + strand at 4556.933 kb on - strand at 4556.933 kb on - strand at 4556.985 kb on + strand at 4556.985 kb on + strand at 4556.986 kb on - strand at 4556.987 kb on + strand at 4556.987 kb on + strand at 4556.987 kb on + strand at 4556.988 kb on - strand at 4556.988 kb on - strand at 4556.988 kb on - strand at 4556.988 kb on - strand at 4556.988 kb on - strand at 4557.007 kb on - strand at 4557.085 kb on + strand at 4557.085 kb on + strand at 4557.086 kb on - strand at 4557.086 kb on - strand at 4557.086 kb on - strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.136 kb on + strand at 4557.137 kb on - strand at 4557.137 kb on - strand at 4557.137 kb on - strand at 4557.137 kb on - strand at 4557.137 kb on - strand at 4557.137 kb on - strand at 4557.138 kb on + strand at 4557.139 kb on - strand at 4557.139 kb on - strand at 4557.139 kb on - strand at 4557.215 kb on + strand, within DZA65_RS21080 at 4557.215 kb on + strand, within DZA65_RS21080 at 4557.216 kb on - strand at 4557.270 kb on + strand, within DZA65_RS21080 at 4557.270 kb on + strand, within DZA65_RS21080 at 4557.271 kb on - strand, within DZA65_RS21080 at 4557.307 kb on - strand, within DZA65_RS21080 at 4557.586 kb on - strand, within DZA65_RS21080 at 4557.586 kb on - strand, within DZA65_RS21080
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,554,680 + DZA65_RS21065 0.23 +0.8 4,554,681 - DZA65_RS21065 0.24 -0.2 4,554,772 + DZA65_RS21065 0.32 +0.4 4,554,772 + DZA65_RS21065 0.32 +1.4 4,554,787 - DZA65_RS21065 0.34 -1.0 4,554,804 + DZA65_RS21065 0.35 -1.4 4,554,804 + DZA65_RS21065 0.35 -0.2 4,554,804 + DZA65_RS21065 0.35 -0.2 4,554,804 + DZA65_RS21065 0.35 -0.0 4,554,804 + DZA65_RS21065 0.35 +0.1 4,554,804 + DZA65_RS21065 0.35 +0.4 4,554,804 + DZA65_RS21065 0.35 +0.3 4,554,804 + DZA65_RS21065 0.35 +0.7 4,554,805 - DZA65_RS21065 0.35 -0.3 4,554,805 - DZA65_RS21065 0.35 +1.1 4,554,805 - DZA65_RS21065 0.35 -1.9 4,554,805 - DZA65_RS21065 0.35 -0.4 4,554,805 - DZA65_RS21065 0.35 +1.1 4,554,805 - DZA65_RS21065 0.35 -1.4 4,554,805 - DZA65_RS21065 0.35 +0.3 4,554,805 - DZA65_RS21065 0.35 -0.5 4,554,805 - DZA65_RS21065 0.35 -0.3 4,554,828 + DZA65_RS21065 0.37 -1.7 4,554,828 + DZA65_RS21065 0.37 -0.7 4,554,828 + DZA65_RS21065 0.37 +0.8 4,554,828 + DZA65_RS21065 0.37 +0.1 4,554,828 + DZA65_RS21065 0.37 +0.3 4,554,828 + DZA65_RS21065 0.37 -1.0 4,554,828 + DZA65_RS21065 0.37 -0.2 4,554,828 + DZA65_RS21065 0.37 -0.1 4,554,828 + DZA65_RS21065 0.37 +0.6 4,554,828 + DZA65_RS21065 0.37 -1.0 4,554,828 + DZA65_RS21065 0.37 -1.7 4,554,829 - DZA65_RS21065 0.37 -1.1 4,554,829 - DZA65_RS21065 0.37 +1.3 4,554,829 - DZA65_RS21065 0.37 -0.0 4,554,829 - DZA65_RS21065 0.37 +0.2 4,554,829 - DZA65_RS21065 0.37 +0.5 4,554,829 - DZA65_RS21065 0.37 +1.1 4,554,829 - DZA65_RS21065 0.37 -0.0 4,554,829 - DZA65_RS21065 0.37 +0.6 4,554,829 - DZA65_RS21065 0.37 +0.2 4,554,832 - +0.3 4,554,832 - DZA65_RS21065 0.38 -1.6 4,554,832 - DZA65_RS21065 0.38 +0.4 4,554,875 + DZA65_RS21065 0.42 +1.0 4,554,875 + DZA65_RS21065 0.42 -1.0 4,554,875 + DZA65_RS21065 0.42 +0.6 4,554,875 + DZA65_RS21065 0.42 +0.3 4,554,905 + DZA65_RS21065 0.45 -0.3 4,554,905 + DZA65_RS21065 0.45 +0.0 4,554,905 + DZA65_RS21065 0.45 -1.6 4,554,905 + DZA65_RS21065 0.45 +0.2 4,554,906 - DZA65_RS21065 0.45 +0.8 4,554,971 + DZA65_RS21065 0.51 -0.1 4,555,039 - DZA65_RS21065 0.57 -0.7 4,555,049 - DZA65_RS21065 0.58 -0.4 4,555,049 - DZA65_RS21065 0.58 -0.7 4,555,049 - DZA65_RS21065 0.58 -0.3 4,555,164 - DZA65_RS21065 0.69 +0.4 4,555,164 - DZA65_RS21065 0.69 +0.2 4,555,165 + DZA65_RS21065 0.69 +0.9 4,555,165 + DZA65_RS21065 0.69 -0.4 4,555,165 + DZA65_RS21065 0.69 +0.2 4,555,165 + DZA65_RS21065 0.69 -0.2 4,555,166 - DZA65_RS21065 0.69 -1.0 4,555,220 + DZA65_RS21065 0.74 +0.4 4,555,220 + DZA65_RS21065 0.74 -0.3 4,555,220 + DZA65_RS21065 0.74 -1.3 4,555,220 + DZA65_RS21065 0.74 -0.0 4,555,220 + DZA65_RS21065 0.74 +0.2 4,555,221 - DZA65_RS21065 0.75 -0.2 4,555,221 - DZA65_RS21065 0.75 +0.3 4,555,221 - DZA65_RS21065 0.75 -2.4 4,555,221 - DZA65_RS21065 0.75 -0.4 4,555,221 - DZA65_RS21065 0.75 -0.0 4,555,221 - DZA65_RS21065 0.75 -0.7 4,555,224 + DZA65_RS21065 0.75 -1.9 4,555,224 + DZA65_RS21065 0.75 +0.8 4,555,224 + DZA65_RS21065 0.75 +1.4 4,555,225 - DZA65_RS21065 0.75 -1.9 4,555,225 - DZA65_RS21065 0.75 +0.3 4,555,225 - DZA65_RS21065 0.75 -1.4 4,555,225 - DZA65_RS21065 0.75 -0.8 4,555,225 - DZA65_RS21065 0.75 +0.4 4,555,225 - DZA65_RS21065 0.75 -0.4 4,555,225 - DZA65_RS21065 0.75 -0.1 4,555,225 - DZA65_RS21065 0.75 -0.6 4,555,225 - DZA65_RS21065 0.75 +1.6 4,555,308 - DZA65_RS21065 0.83 -0.4 4,555,308 - DZA65_RS21065 0.83 -0.0 4,555,334 + DZA65_RS21065 0.85 -0.6 4,555,411 + +0.6 4,555,411 + +2.2 4,555,411 + -0.1 4,555,411 + +0.6 4,555,412 - +0.6 4,555,412 - +0.5 4,555,412 - +0.3 4,555,412 - -0.6 4,555,504 + -1.1 4,555,504 + -1.3 4,555,504 + -0.2 4,555,504 + -0.3 4,555,504 + +0.7 4,555,505 - -0.5 4,555,505 - +0.4 4,555,505 - +0.6 4,555,505 - -1.7 4,555,572 + -0.4 4,555,572 + +0.6 4,555,572 + +1.0 4,555,572 + -1.3 4,555,572 + -0.9 4,555,572 + +1.6 4,555,572 + -0.1 4,555,572 + -1.4 4,555,572 + +0.6 4,555,572 + +0.2 4,555,572 + +1.1 4,555,572 + +0.2 4,555,573 - +0.3 4,555,573 - +0.2 4,555,573 - -1.4 4,555,573 - +0.0 4,555,573 - -0.5 4,555,573 - +0.6 4,555,573 - +0.5 4,555,573 - +0.2 4,555,573 - -0.2 4,555,573 - -0.0 4,555,573 - -2.1 4,555,573 - +0.6 4,555,573 - +0.5 4,555,573 - -1.0 4,555,690 - -1.4 4,555,695 + -1.7 4,555,725 - -0.7 4,555,783 + DZA65_RS21075 0.13 +0.2 4,555,784 - DZA65_RS21075 0.13 -1.7 4,555,784 - DZA65_RS21075 0.13 -1.4 4,555,788 + DZA65_RS21075 0.13 +1.0 4,555,789 - DZA65_RS21075 0.13 -2.7 4,556,103 + DZA65_RS21075 0.46 -0.4 4,556,272 - DZA65_RS21075 0.64 -0.8 4,556,310 + DZA65_RS21075 0.68 -1.6 4,556,310 + DZA65_RS21075 0.68 -0.8 4,556,376 + DZA65_RS21075 0.75 -1.0 4,556,776 - -0.6 4,556,776 - -1.1 4,556,795 - -1.4 4,556,795 - +0.6 4,556,795 - -0.4 4,556,795 - +0.8 4,556,802 - +1.6 4,556,807 - -1.0 4,556,874 - +0.3 4,556,915 + -0.3 4,556,915 + +0.2 4,556,915 + -0.4 4,556,915 + -2.1 4,556,915 + -0.2 4,556,916 - +1.4 4,556,916 - +2.1 4,556,916 - +1.7 4,556,932 + -0.1 4,556,933 - +0.1 4,556,933 - -0.7 4,556,985 + -0.0 4,556,985 + +1.0 4,556,986 - +0.3 4,556,987 + +0.1 4,556,987 + -0.6 4,556,987 + -0.0 4,556,988 - -2.0 4,556,988 - +0.7 4,556,988 - -0.4 4,556,988 - +0.7 4,556,988 - -2.0 4,557,007 - -1.0 4,557,085 + -0.4 4,557,085 + -1.0 4,557,086 - -0.7 4,557,086 - -0.3 4,557,086 - -1.7 4,557,136 + +0.6 4,557,136 + +1.3 4,557,136 + -0.2 4,557,136 + +0.5 4,557,136 + +0.2 4,557,136 + -0.0 4,557,136 + -1.4 4,557,136 + -0.7 4,557,136 + -2.5 4,557,136 + +0.4 4,557,137 - +0.8 4,557,137 - +0.9 4,557,137 - -1.2 4,557,137 - +0.7 4,557,137 - +0.9 4,557,137 - +0.3 4,557,138 + -2.2 4,557,139 - -0.8 4,557,139 - -1.4 4,557,139 - +0.4 4,557,215 + DZA65_RS21080 0.11 +0.3 4,557,215 + DZA65_RS21080 0.11 +0.9 4,557,216 - +0.6 4,557,270 + DZA65_RS21080 0.13 -1.3 4,557,270 + DZA65_RS21080 0.13 -0.8 4,557,271 - DZA65_RS21080 0.13 -1.7 4,557,307 - DZA65_RS21080 0.15 -0.2 4,557,586 - DZA65_RS21080 0.28 +3.4 4,557,586 - DZA65_RS21080 0.28 -1.4
Or see this region's nucleotide sequence