Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20885 and DZA65_RS20890 are separated by 44 nucleotides DZA65_RS20890 and DZA65_RS20895 are separated by 143 nucleotides
DZA65_RS20885: DZA65_RS20885 - maltodextrin phosphorylase, at 4,509,527 to 4,511,950
_RS20885
DZA65_RS20890: DZA65_RS20890 - DeoR/GlpR family transcriptional regulator, at 4,511,995 to 4,512,753
_RS20890
DZA65_RS20895: DZA65_RS20895 - rhomboid family intramembrane serine protease GlpG, at 4,512,897 to 4,513,721
_RS20895
Position (kb) 4511
4512
4513 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4511.017 kb on - strand, within DZA65_RS20885 at 4511.017 kb on - strand, within DZA65_RS20885 at 4511.097 kb on + strand, within DZA65_RS20885 at 4511.097 kb on + strand, within DZA65_RS20885 at 4511.148 kb on + strand, within DZA65_RS20885 at 4511.202 kb on + strand, within DZA65_RS20885 at 4511.502 kb on + strand, within DZA65_RS20885 at 4511.502 kb on + strand, within DZA65_RS20885 at 4511.502 kb on + strand, within DZA65_RS20885 at 4511.503 kb on - strand, within DZA65_RS20885 at 4511.503 kb on - strand, within DZA65_RS20885 at 4511.508 kb on + strand, within DZA65_RS20885 at 4511.562 kb on + strand, within DZA65_RS20885 at 4511.563 kb on - strand, within DZA65_RS20885 at 4511.676 kb on + strand, within DZA65_RS20885 at 4511.677 kb on - strand, within DZA65_RS20885 at 4511.677 kb on - strand, within DZA65_RS20885 at 4511.677 kb on - strand, within DZA65_RS20885 at 4511.677 kb on - strand, within DZA65_RS20885 at 4511.677 kb on - strand, within DZA65_RS20885 at 4511.739 kb on + strand at 4511.739 kb on + strand at 4511.739 kb on + strand at 4511.739 kb on + strand at 4511.739 kb on + strand at 4511.743 kb on + strand at 4511.743 kb on + strand at 4511.743 kb on + strand at 4511.743 kb on + strand at 4511.743 kb on + strand at 4511.743 kb on + strand at 4511.743 kb on + strand at 4511.744 kb on - strand at 4511.744 kb on - strand at 4511.744 kb on - strand at 4511.744 kb on - strand at 4511.744 kb on - strand at 4511.744 kb on - strand at 4511.744 kb on - strand at 4511.744 kb on - strand at 4511.744 kb on - strand at 4511.888 kb on - strand at 4511.888 kb on - strand at 4511.888 kb on - strand at 4511.966 kb on + strand at 4511.966 kb on + strand at 4511.967 kb on - strand at 4512.019 kb on - strand at 4512.055 kb on + strand at 4512.198 kb on - strand, within DZA65_RS20890 at 4512.226 kb on - strand, within DZA65_RS20890 at 4512.475 kb on - strand, within DZA65_RS20890 at 4512.698 kb on + strand at 4512.699 kb on - strand at 4512.796 kb on + strand at 4512.796 kb on + strand at 4512.797 kb on - strand at 4512.797 kb on - strand at 4512.840 kb on + strand at 4512.841 kb on - strand at 4512.848 kb on - strand at 4512.866 kb on + strand at 4512.866 kb on + strand at 4512.867 kb on - strand at 4512.867 kb on - strand at 4512.867 kb on - strand at 4512.880 kb on + strand at 4512.881 kb on - strand at 4512.887 kb on + strand at 4512.888 kb on - strand at 4512.888 kb on - strand at 4512.888 kb on - strand at 4512.918 kb on - strand at 4513.000 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.093 kb on + strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.094 kb on - strand, within DZA65_RS20895 at 4513.108 kb on + strand at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.108 kb on + strand, within DZA65_RS20895 at 4513.109 kb on - strand, within DZA65_RS20895 at 4513.109 kb on - strand, within DZA65_RS20895 at 4513.109 kb on - strand, within DZA65_RS20895 at 4513.135 kb on + strand, within DZA65_RS20895 at 4513.135 kb on + strand, within DZA65_RS20895 at 4513.135 kb on + strand, within DZA65_RS20895 at 4513.136 kb on - strand, within DZA65_RS20895 at 4513.136 kb on - strand, within DZA65_RS20895 at 4513.159 kb on - strand, within DZA65_RS20895 at 4513.159 kb on - strand, within DZA65_RS20895 at 4513.243 kb on + strand, within DZA65_RS20895 at 4513.243 kb on + strand, within DZA65_RS20895 at 4513.243 kb on + strand, within DZA65_RS20895 at 4513.244 kb on - strand, within DZA65_RS20895 at 4513.351 kb on - strand, within DZA65_RS20895 at 4513.371 kb on + strand, within DZA65_RS20895 at 4513.371 kb on + strand, within DZA65_RS20895 at 4513.396 kb on + strand, within DZA65_RS20895 at 4513.396 kb on + strand, within DZA65_RS20895 at 4513.396 kb on + strand, within DZA65_RS20895 at 4513.397 kb on - strand, within DZA65_RS20895 at 4513.465 kb on + strand, within DZA65_RS20895 at 4513.466 kb on - strand, within DZA65_RS20895 at 4513.529 kb on - strand, within DZA65_RS20895 at 4513.632 kb on - strand, within DZA65_RS20895 at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.664 kb on + strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.665 kb on - strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.666 kb on + strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.667 kb on - strand at 4513.728 kb on - strand at 4513.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,511,017 - DZA65_RS20885 0.61 -1.4 4,511,017 - DZA65_RS20885 0.61 -0.9 4,511,097 + DZA65_RS20885 0.65 +0.4 4,511,097 + DZA65_RS20885 0.65 +1.4 4,511,148 + DZA65_RS20885 0.67 -1.3 4,511,202 + DZA65_RS20885 0.69 -1.0 4,511,502 + DZA65_RS20885 0.81 -0.1 4,511,502 + DZA65_RS20885 0.81 +1.3 4,511,502 + DZA65_RS20885 0.81 +0.1 4,511,503 - DZA65_RS20885 0.82 -1.0 4,511,503 - DZA65_RS20885 0.82 -0.8 4,511,508 + DZA65_RS20885 0.82 +1.0 4,511,562 + DZA65_RS20885 0.84 +0.3 4,511,563 - DZA65_RS20885 0.84 -0.3 4,511,676 + DZA65_RS20885 0.89 +0.6 4,511,677 - DZA65_RS20885 0.89 +0.9 4,511,677 - DZA65_RS20885 0.89 +0.2 4,511,677 - DZA65_RS20885 0.89 -0.3 4,511,677 - DZA65_RS20885 0.89 -0.6 4,511,677 - DZA65_RS20885 0.89 +0.2 4,511,739 + +0.1 4,511,739 + -0.2 4,511,739 + -0.9 4,511,739 + +0.2 4,511,739 + -0.2 4,511,743 + +0.8 4,511,743 + +0.3 4,511,743 + +0.4 4,511,743 + +1.0 4,511,743 + +0.5 4,511,743 + -0.9 4,511,743 + +0.7 4,511,744 - +1.3 4,511,744 - -2.9 4,511,744 - -0.6 4,511,744 - -0.4 4,511,744 - +0.6 4,511,744 - -0.4 4,511,744 - -0.7 4,511,744 - -0.2 4,511,744 - -1.9 4,511,888 - +0.0 4,511,888 - +0.2 4,511,888 - -0.8 4,511,966 + -1.6 4,511,966 + -0.4 4,511,967 - -0.4 4,512,019 - -0.3 4,512,055 + -0.0 4,512,198 - DZA65_RS20890 0.27 -0.6 4,512,226 - DZA65_RS20890 0.30 -0.2 4,512,475 - DZA65_RS20890 0.63 -0.8 4,512,698 + -2.0 4,512,699 - -0.2 4,512,796 + +0.3 4,512,796 + +1.0 4,512,797 - +0.2 4,512,797 - +0.5 4,512,840 + +0.2 4,512,841 - -3.4 4,512,848 - +0.7 4,512,866 + -0.6 4,512,866 + -1.0 4,512,867 - -0.2 4,512,867 - -0.0 4,512,867 - +0.3 4,512,880 + -0.4 4,512,881 - -1.8 4,512,887 + -0.0 4,512,888 - +0.6 4,512,888 - -0.6 4,512,888 - -0.0 4,512,918 - -0.6 4,513,000 + DZA65_RS20895 0.12 -0.0 4,513,093 + DZA65_RS20895 0.24 -1.3 4,513,093 + DZA65_RS20895 0.24 +0.3 4,513,093 + DZA65_RS20895 0.24 -0.1 4,513,093 + DZA65_RS20895 0.24 +0.6 4,513,094 - DZA65_RS20895 0.24 +1.4 4,513,094 - DZA65_RS20895 0.24 +0.3 4,513,094 - DZA65_RS20895 0.24 -0.1 4,513,094 - DZA65_RS20895 0.24 +0.1 4,513,094 - DZA65_RS20895 0.24 -1.4 4,513,108 + -1.0 4,513,108 + DZA65_RS20895 0.26 +0.4 4,513,108 + DZA65_RS20895 0.26 +2.0 4,513,108 + DZA65_RS20895 0.26 +0.8 4,513,108 + DZA65_RS20895 0.26 +1.9 4,513,109 - DZA65_RS20895 0.26 +0.8 4,513,109 - DZA65_RS20895 0.26 +0.4 4,513,109 - DZA65_RS20895 0.26 -0.4 4,513,135 + DZA65_RS20895 0.29 -0.3 4,513,135 + DZA65_RS20895 0.29 -1.4 4,513,135 + DZA65_RS20895 0.29 +1.1 4,513,136 - DZA65_RS20895 0.29 -0.6 4,513,136 - DZA65_RS20895 0.29 -0.1 4,513,159 - DZA65_RS20895 0.32 +1.2 4,513,159 - DZA65_RS20895 0.32 -0.7 4,513,243 + DZA65_RS20895 0.42 -0.0 4,513,243 + DZA65_RS20895 0.42 +0.1 4,513,243 + DZA65_RS20895 0.42 -0.2 4,513,244 - DZA65_RS20895 0.42 +2.0 4,513,351 - DZA65_RS20895 0.55 +0.6 4,513,371 + DZA65_RS20895 0.57 -2.0 4,513,371 + DZA65_RS20895 0.57 +0.1 4,513,396 + DZA65_RS20895 0.60 +0.1 4,513,396 + DZA65_RS20895 0.60 +0.2 4,513,396 + DZA65_RS20895 0.60 +0.8 4,513,397 - DZA65_RS20895 0.61 +0.9 4,513,465 + DZA65_RS20895 0.69 +1.2 4,513,466 - DZA65_RS20895 0.69 +0.4 4,513,529 - DZA65_RS20895 0.77 -0.3 4,513,632 - DZA65_RS20895 0.89 -1.0 4,513,664 + -0.4 4,513,664 + +0.3 4,513,664 + -2.2 4,513,664 + -0.0 4,513,664 + +0.6 4,513,664 + +1.9 4,513,664 + -0.0 4,513,664 + -0.1 4,513,664 + +1.0 4,513,664 + +0.2 4,513,664 + -0.8 4,513,665 - -0.1 4,513,665 - +0.6 4,513,665 - -0.0 4,513,665 - +0.4 4,513,665 - -0.4 4,513,665 - -0.7 4,513,665 - +1.3 4,513,665 - +2.9 4,513,665 - +0.6 4,513,665 - -0.6 4,513,665 - -2.2 4,513,665 - -0.8 4,513,665 - -0.4 4,513,665 - -0.7 4,513,665 - +1.5 4,513,665 - -0.6 4,513,665 - +0.2 4,513,665 - +0.6 4,513,665 - +0.0 4,513,665 - +1.1 4,513,665 - -0.6 4,513,665 - -0.5 4,513,665 - -0.2 4,513,666 + +0.0 4,513,666 + -0.0 4,513,666 + +0.1 4,513,666 + -0.4 4,513,666 + -0.2 4,513,667 - -0.2 4,513,667 - -0.4 4,513,667 - +1.1 4,513,667 - +0.3 4,513,667 - +0.2 4,513,667 - -1.6 4,513,667 - -0.0 4,513,728 - +0.2 4,513,728 - -1.8
Or see this region's nucleotide sequence