Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20220

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	LB
				remove
4,378,494	+	DZA65_RS20210	0.81	-1.8
4,378,687	+			-0.1
4,378,691	+			+2.6
4,378,691	+			-0.4
4,378,691	+			-0.2
4,378,691	+			+0.9
4,378,691	+			+0.3
4,378,691	+			+0.1
4,378,691	+			-2.8
4,378,692	-			-3.3
4,378,692	-			-0.1
4,378,751	+			-0.8
4,378,751	+			-0.2
4,378,751	+			-3.2
4,378,751	+			+0.3
4,378,751	+			+0.9
4,378,751	+			-1.0
4,378,751	+			-0.3
4,378,751	+			+0.9
4,378,752	-			+1.1
4,378,752	-			+0.0
4,378,752	-			+0.0
4,378,752	-			-0.7
4,378,752	-			+0.0
4,378,752	-			+0.3
4,378,752	-			-0.4
4,378,752	-			+0.3
4,378,752	-			+0.1
4,378,752	-			-1.6
4,378,752	-			+1.0
4,378,753	+			-0.8
4,378,753	+			-0.3
4,378,753	+			+1.3
4,378,753	+			+0.5
4,378,753	+			+0.1
4,378,753	+			+1.3
4,378,753	+			-0.3
4,378,753	+			+0.7
4,378,754	-			+0.5
4,378,754	-			+0.1
4,378,754	-			-1.2
4,378,754	-			+0.8
4,378,798	-	DZA65_RS20215	0.17	-1.7
4,378,798	-	DZA65_RS20215	0.17	+0.4
4,378,833	+	DZA65_RS20215	0.27	-0.8
4,378,833	+	DZA65_RS20215	0.27	+0.5
4,378,833	+	DZA65_RS20215	0.27	-0.6
4,378,833	+	DZA65_RS20215	0.27	+0.0
4,378,833	+	DZA65_RS20215	0.27	+0.1
4,378,833	+	DZA65_RS20215	0.27	-1.2
4,378,833	+	DZA65_RS20215	0.27	-0.2
4,378,833	+	DZA65_RS20215	0.27	+0.6
4,378,834	-	DZA65_RS20215	0.27	-0.7
4,378,834	-	DZA65_RS20215	0.27	-0.5
4,378,834	-	DZA65_RS20215	0.27	+0.9
4,378,834	-	DZA65_RS20215	0.27	+0.3
4,378,834	-	DZA65_RS20215	0.27	+0.8
4,378,834	-	DZA65_RS20215	0.27	+0.8
4,378,834	-	DZA65_RS20215	0.27	-0.2
4,378,976	+	DZA65_RS20215	0.68	+1.7
4,378,976	+	DZA65_RS20215	0.68	-0.5
4,378,977	-	DZA65_RS20215	0.69	-0.5
4,378,985	+	DZA65_RS20215	0.71	-0.3
4,378,986	-	DZA65_RS20215	0.71	+0.5
4,379,021	+	DZA65_RS20215	0.81	+0.3
4,379,027	+	DZA65_RS20215	0.83	-1.4
4,379,027	+	DZA65_RS20215	0.83	-0.4
4,379,070	+			+2.0
4,379,071	-			-1.4
4,379,071	-			-1.4
4,379,072	+			-1.1
4,379,072	+			+1.0
4,379,072	+			+1.3
4,379,072	+			+0.1
4,379,072	+			-0.1
4,379,072	+			-0.2
4,379,072	+			-1.8
4,379,072	+			-0.3
4,379,072	+			+0.1
4,379,072	+			+0.1
4,379,073	-			-0.7
4,379,073	-			+0.1
4,379,073	-			+0.5
4,379,073	-			+0.5
4,379,073	-			-0.6
4,379,100	-			-0.4
4,379,106	+			-0.9
4,379,106	+			+0.2
4,379,107	-			-0.5
4,379,107	-			+1.2
4,379,151	+			+0.7
4,379,151	+			+0.4
4,379,152	-			-0.9
4,379,173	-			+0.9
4,379,211	+			-0.5
4,379,211	+			+0.9
4,379,211	+			+0.5
4,379,211	+			-0.2
4,379,211	+			+0.2
4,379,211	+			+0.1
4,379,211	+			-0.3
4,379,211	+			+0.7
4,379,211	+			-0.1
4,379,211	+			-0.2
4,379,211	+			+0.9
4,379,211	+			+0.5
4,379,211	+			+0.1
4,379,211	+			+0.1
4,379,212	-			+0.5
4,379,212	-			+0.5
4,379,212	-			-0.9
4,379,212	-			-0.9
4,379,212	-			-1.1
4,379,212	-			+1.1
4,379,212	-			+0.5
4,379,212	-			-2.1
4,379,212	-			-0.3
4,379,212	-			+0.6
4,379,212	-			-1.5
4,379,212	-			-2.7
4,379,212	-			-0.2
4,379,212	-			+1.5
4,379,283	+			-0.1
4,379,283	+			+1.2
4,379,283	+			-0.9
4,379,286	+			-0.1
4,379,286	+			+0.5
4,379,286	+			-1.2
4,379,286	+			-1.5
4,379,286	+			+0.1
4,379,286	+			-2.6
4,379,286	+			+1.8
4,379,286	+			+0.5
4,379,286	+			+0.4
4,379,287	-			+0.9
4,379,287	-			-0.0
4,379,287	-			+0.5
4,379,287	-			-0.5
4,379,305	+			-0.3
4,379,345	+			-2.1
4,379,346	-			-0.7
4,379,346	-			+0.5
4,379,546	+	DZA65_RS20220	0.15	-0.8
4,379,569	-	DZA65_RS20220	0.16	-0.3
4,379,569	-	DZA65_RS20220	0.16	-2.5
4,379,569	-	DZA65_RS20220	0.16	-1.5
4,379,788	+	DZA65_RS20220	0.29	-0.1
4,379,788	+	DZA65_RS20220	0.29	-0.6
4,379,789	-	DZA65_RS20220	0.29	-0.8
4,379,845	+	DZA65_RS20220	0.33	-0.8
4,379,875	+	DZA65_RS20220	0.35	-1.1
4,379,875	+	DZA65_RS20220	0.35	-0.7
4,379,876	-	DZA65_RS20220	0.35	-0.8
4,379,876	-	DZA65_RS20220	0.35	-2.5
4,379,876	-	DZA65_RS20220	0.35	-1.1
4,379,876	-	DZA65_RS20220	0.35	-0.2
4,379,930	+	DZA65_RS20220	0.38	-1.1
4,379,930	+	DZA65_RS20220	0.38	+0.3
4,379,930	+	DZA65_RS20220	0.38	-1.5
4,379,930	+	DZA65_RS20220	0.38	-0.6
4,379,930	+	DZA65_RS20220	0.38	+0.5
4,379,930	+	DZA65_RS20220	0.38	+1.3
4,379,930	+	DZA65_RS20220	0.38	-0.6
4,379,930	+	DZA65_RS20220	0.38	+0.1
4,379,930	+	DZA65_RS20220	0.38	-0.1
4,379,930	+	DZA65_RS20220	0.38	-1.3
4,379,930	+	DZA65_RS20220	0.38	-1.8
4,379,930	+	DZA65_RS20220	0.38	-1.1
4,379,930	+	DZA65_RS20220	0.38	+0.5
4,379,930	+	DZA65_RS20220	0.38	-0.8
4,379,930	+	DZA65_RS20220	0.38	-0.6
4,379,930	+	DZA65_RS20220	0.38	+1.3
4,379,930	+	DZA65_RS20220	0.38	-0.5
4,379,930	+	DZA65_RS20220	0.38	-0.3
4,379,931	-	DZA65_RS20220	0.38	-3.1
4,379,931	-	DZA65_RS20220	0.38	-0.6
4,379,931	-	DZA65_RS20220	0.38	-0.6
4,379,931	-	DZA65_RS20220	0.38	-0.1
4,379,931	-	DZA65_RS20220	0.38	-0.1
4,379,931	-	DZA65_RS20220	0.38	+0.2
4,379,931	-	DZA65_RS20220	0.38	-1.1
4,379,931	-	DZA65_RS20220	0.38	-1.9
4,379,931	-			-1.1
4,379,931	-	DZA65_RS20220	0.38	-0.1
4,379,931	-	DZA65_RS20220	0.38	-1.6
4,379,931	-	DZA65_RS20220	0.38	+1.1
4,379,931	-	DZA65_RS20220	0.38	-1.1
4,379,931	-	DZA65_RS20220	0.38	-0.6
4,379,932	+	DZA65_RS20220	0.38	-1.1
4,379,932	+	DZA65_RS20220	0.38	-0.5
4,379,933	-	DZA65_RS20220	0.38	-0.5
4,379,933	-	DZA65_RS20220	0.38	-0.1
4,379,933	-	DZA65_RS20220	0.38	+0.2
4,379,933	-	DZA65_RS20220	0.38	-2.1
4,379,933	-	DZA65_RS20220	0.38	+0.9
4,379,983	+	DZA65_RS20220	0.41	-2.1
4,379,983	+	DZA65_RS20220	0.41	-2.2
4,379,983	+	DZA65_RS20220	0.41	-1.6
4,379,984	-	DZA65_RS20220	0.41	-3.1
4,380,439	+	DZA65_RS20220	0.69	-0.1
4,380,466	+	DZA65_RS20220	0.70	+0.6
4,380,466	+	DZA65_RS20220	0.70	-1.2
4,380,466	+	DZA65_RS20220	0.70	+0.9
4,380,466	+	DZA65_RS20220	0.70	-0.7
4,380,466	+	DZA65_RS20220	0.70	-0.7
4,380,467	-	DZA65_RS20220	0.70	-0.2
4,380,467	-	DZA65_RS20220	0.70	-1.8
4,380,467	-	DZA65_RS20220	0.70	-1.8
4,380,467	-	DZA65_RS20220	0.70	-0.4
4,380,467	-	DZA65_RS20220	0.70	+0.9
4,380,467	-	DZA65_RS20220	0.70	-0.3
4,380,529	+	DZA65_RS20220	0.74	+1.0
4,380,529	+	DZA65_RS20220	0.74	+1.9
4,380,635	+	DZA65_RS20220	0.81	-0.3
4,380,635	+	DZA65_RS20220	0.81	-0.8
4,380,635	+	DZA65_RS20220	0.81	+0.1
4,380,636	-	DZA65_RS20220	0.81	-0.5
4,380,959	+			-0.1
4,380,959	+			+0.8
4,380,959	+			-1.1
4,380,959	+			-1.1
4,381,055	+			+1.3
4,381,055	+			-0.2
4,381,055	+			+0.3
4,381,055	+			+0.3
4,381,055	+			-0.1
4,381,056	-			-0.4
4,381,056	-			-0.9
4,381,056	-			-0.1
4,381,150	-			-0.9
4,381,157	+			+0.5
4,381,157	+			-0.9
4,381,158	-			+0.7
4,381,158	-			-0.2
4,381,158	-			-2.2
4,381,235	+			+0.5
4,381,236	-			-0.5
4,381,266	+			-2.5
4,381,266	+			+0.4
4,381,266	+			+0.2
4,381,266	+			-0.5
4,381,266	+			+1.1
4,381,267	-			+0.1
4,381,267	-			-1.2
4,381,271	+			+0.4
4,381,271	+			+0.7
4,381,271	+			-0.2
4,381,271	+			-1.8
4,381,272	-			-0.3
4,381,272	-			-1.4
4,381,272	-			-0.8
4,381,280	+			+0.6
4,381,280	+			-1.3
4,381,281	-			+0.5
4,381,389	+			-0.2
4,381,432	+			+1.0
4,381,432	+			-1.1
4,381,432	+			+1.5
4,381,488	+			-0.1
4,381,488	+			+0.0
4,381,489	-			-0.1
4,381,508	+			-0.9
4,381,508	+			+0.1
4,381,508	+			+0.5
4,381,615	+			+0.1
4,381,616	-			-1.1
4,381,719	+	DZA65_RS20225	0.17	-0.1
4,381,719	+	DZA65_RS20225	0.17	-1.2
4,381,775	+	DZA65_RS20225	0.21	+0.0
4,381,775	+	DZA65_RS20225	0.21	+0.4
4,381,775	+	DZA65_RS20225	0.21	-3.1
4,381,776	-	DZA65_RS20225	0.21	-0.2
4,381,776	-	DZA65_RS20225	0.21	+2.1
4,381,776	-	DZA65_RS20225	0.21	+0.2
4,381,776	-	DZA65_RS20225	0.21	-0.5
4,381,776	-	DZA65_RS20225	0.21	+0.3
4,381,776	-	DZA65_RS20225	0.21	+0.9
4,381,885	+	DZA65_RS20225	0.29	-0.6
4,381,885	+	DZA65_RS20225	0.29	+0.8
4,381,885	+	DZA65_RS20225	0.29	-1.8
4,381,934	+	DZA65_RS20225	0.32	+0.5
4,381,934	+	DZA65_RS20225	0.32	+0.4
4,381,935	-	DZA65_RS20225	0.33	+1.2

Or see this region's nucleotide sequence