Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17540

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,778,866	+		DZA65_RS17535	0.12	-0.2
3,778,930	+		DZA65_RS17535	0.18	+0.5
3,778,930	+		DZA65_RS17535	0.18	+2.0
3,778,930	+		DZA65_RS17535	0.18	+1.8
3,778,930	+				-0.5
3,778,930	+		DZA65_RS17535	0.18	+0.7
3,778,931	-		DZA65_RS17535	0.18	+0.3
3,778,931	-		DZA65_RS17535	0.18	+0.2
3,778,932	+		DZA65_RS17535	0.19	+1.9
3,778,933	-		DZA65_RS17535	0.19	-0.3
3,778,933	-		DZA65_RS17535	0.19	+0.5
3,778,933	-		DZA65_RS17535	0.19	-0.4
3,778,933	-		DZA65_RS17535	0.19	-0.0
3,779,210	-		DZA65_RS17535	0.46	-1.2
3,779,253	+		DZA65_RS17535	0.50	-0.1
3,779,273	+		DZA65_RS17535	0.52	+0.2
3,779,278	+		DZA65_RS17535	0.53	-0.9
3,779,278	+		DZA65_RS17535	0.53	+0.1
3,779,405	-		DZA65_RS17535	0.65	-2.4
3,779,410	+		DZA65_RS17535	0.66	+0.3
3,779,411	-		DZA65_RS17535	0.66	+0.2
3,779,503	+		DZA65_RS17535	0.75	-2.1
3,779,503	+		DZA65_RS17535	0.75	+0.2
3,779,504	-		DZA65_RS17535	0.75	-0.1
3,779,504	-		DZA65_RS17535	0.75	-1.1
3,779,504	-		DZA65_RS17535	0.75	+1.1
3,779,628	+		DZA65_RS17535	0.88	-0.0
3,779,628	+		DZA65_RS17535	0.88	+0.6
3,779,628	+		DZA65_RS17535	0.88	+0.6
3,779,628	+		DZA65_RS17535	0.88	-0.2
3,779,628	+		DZA65_RS17535	0.88	-0.5
3,779,629	-		DZA65_RS17535	0.88	-0.3
3,779,629	-		DZA65_RS17535	0.88	-0.2
3,779,629	-		DZA65_RS17535	0.88	-0.4
3,779,629	-		DZA65_RS17535	0.88	-1.5
3,779,693	+				+1.0
3,779,693	+				-0.1
3,779,694	-				+0.9
3,779,694	-				+1.7
3,779,708	+				+1.0
3,779,708	+				-0.1
3,779,708	+				-2.1
3,779,708	+				+0.6
3,779,709	-				-0.8
3,779,709	-				-0.3
3,779,711	+				+0.2
3,779,711	+				-0.5
3,779,711	+				-0.7
3,779,711	+				-0.2
3,779,711	+				+0.1
3,779,712	-				-0.7
3,779,712	-				+1.0
3,779,712	-				+0.5
3,779,712	-				-1.0
3,779,712	-				+1.4
3,779,712	-				+1.0
3,779,726	+				+0.2
3,779,726	+				-0.5
3,779,726	+				+0.2
3,779,726	+				+0.0
3,779,726	+				-1.4
3,779,726	+				+1.5
3,779,726	+				+1.0
3,779,726	+				-0.4
3,779,727	-				-0.0
3,779,727	-				+0.2
3,779,727	-				-2.5
3,779,727	-				+1.0
3,779,727	-				+0.5
3,779,727	-				-0.3
3,779,727	-				-0.5
3,779,727	-				-0.5
3,779,727	-				+1.2
3,779,727	-				-0.9
3,779,727	-				+1.2
3,779,727	-				+0.9
3,779,727	-				-0.3
3,779,752	+				+0.5
3,779,861	-		DZA65_RS17540	0.36	+0.1
3,779,908	+		DZA65_RS17540	0.59	-1.1
3,779,908	+		DZA65_RS17540	0.59	+0.7
3,779,908	+		DZA65_RS17540	0.59	-0.4
3,779,908	+		DZA65_RS17540	0.59	-2.7
3,779,908	+		DZA65_RS17540	0.59	-0.1
3,779,908	+		DZA65_RS17540	0.59	-0.1
3,779,908	+		DZA65_RS17540	0.59	-0.4
3,779,908	+		DZA65_RS17540	0.59	-1.0
3,779,908	+		DZA65_RS17540	0.59	+0.0
3,779,908	+		DZA65_RS17540	0.59	-0.1
3,779,908	+		DZA65_RS17540	0.59	-0.3
3,779,908	+		DZA65_RS17540	0.59	-0.5
3,779,908	+		DZA65_RS17540	0.59	+0.0
3,779,908	+		DZA65_RS17540	0.59	+0.2
3,779,909	-		DZA65_RS17540	0.60	+0.0
3,779,909	-		DZA65_RS17540	0.60	-0.3
3,779,909	-		DZA65_RS17540	0.60	-1.9
3,779,909	-		DZA65_RS17540	0.60	+0.1
3,779,909	-		DZA65_RS17540	0.60	+0.5
3,779,909	-		DZA65_RS17540	0.60	+0.5
3,779,909	-		DZA65_RS17540	0.60	-1.0
3,779,909	-		DZA65_RS17540	0.60	-2.1
3,779,909	-		DZA65_RS17540	0.60	-0.8
3,779,909	-		DZA65_RS17540	0.60	-0.5
3,779,909	-		DZA65_RS17540	0.60	-1.1
3,779,909	-		DZA65_RS17540	0.60	-1.3
3,779,909	-		DZA65_RS17540	0.60	+0.7
3,779,909	-		DZA65_RS17540	0.60	-0.0
3,779,909	-		DZA65_RS17540	0.60	+0.5
3,779,909	-		DZA65_RS17540	0.60	+1.0
3,779,909	-		DZA65_RS17540	0.60	-0.8
3,779,909	-		DZA65_RS17540	0.60	+0.5
3,779,909	-		DZA65_RS17540	0.60	-0.5
3,779,909	-		DZA65_RS17540	0.60	-0.0
3,779,909	-		DZA65_RS17540	0.60	+1.3
3,779,909	-				+0.1
3,779,909	-		DZA65_RS17540	0.60	+0.1
3,779,909	-		DZA65_RS17540	0.60	-0.2
3,779,909	-		DZA65_RS17540	0.60	+0.7
3,779,909	-		DZA65_RS17540	0.60	-0.7
3,779,912	+		DZA65_RS17540	0.61	-1.5
3,779,913	-		DZA65_RS17540	0.62	-1.9
3,779,913	-		DZA65_RS17540	0.62	+0.0
3,779,918	-		DZA65_RS17540	0.64	-0.1
3,779,932	-		DZA65_RS17540	0.71	-0.2
3,779,991	-				+0.2
3,779,991	-				+0.8
3,780,042	-				-0.4
3,780,076	+				+0.3
3,780,077	-				+0.3
3,780,077	-				-1.5
3,780,124	+				-0.2
3,780,124	+				+0.3
3,780,124	+				-0.1
3,780,124	+				+1.0
3,780,124	+				+0.8
3,780,124	+				+1.4
3,780,124	+				-0.0
3,780,124	+				-0.5
3,780,125	-				-1.4
3,780,125	-				-0.5
3,780,125	-				+0.9
3,780,125	-				+0.0
3,780,125	-				-0.3
3,780,125	-				-0.4
3,780,188	-				-1.4
3,780,195	+				-1.5
3,780,195	+				-0.5
3,780,195	+				-1.3
3,780,196	-				-0.1
3,780,196	-				-0.1
3,780,200	+				+1.1
3,780,200	+				+1.9
3,780,200	+				-1.5
3,780,200	+				-0.7
3,780,200	+				+0.1
3,780,200	+				-1.7
3,780,201	-				+0.1
3,780,201	-				+0.3
3,780,201	-				-0.1
3,780,201	-				+0.7
3,780,201	-				+0.7
3,780,201	-				+0.1
3,780,201	-				+0.8
3,780,201	-				+0.5
3,780,202	+				+0.6
3,780,202	+				-2.5
3,780,202	+				+0.3
3,780,202	+				+0.2
3,780,202	+				-0.1
3,780,202	+				+0.2
3,780,202	+				+0.1
3,780,202	+				-0.0
3,780,202	+				+0.0
3,780,203	-				-0.2
3,780,203	-				-0.3
3,780,203	-				-0.5
3,780,203	-				+0.3
3,780,203	-				+2.3
3,780,203	-				-0.1
3,780,203	-				-0.8
3,780,203	-				-1.0
3,780,203	-				-1.4
3,780,203	-				-0.8
3,780,231	+				-2.7
3,780,232	-				-0.3
3,780,239	+				+1.0
3,780,239	+				+1.9
3,780,239	+				-0.1
3,780,239	+				-2.2
3,780,239	+				+0.1
3,780,240	-				-1.5
3,780,240	-				+1.0
3,780,240	-				-0.5
3,780,240	-				-1.5
3,780,240	-				+0.6
3,780,244	+				+1.0
3,780,244	+				+0.5
3,780,244	+				-0.3
3,780,244	+				+0.2
3,780,244	+				+0.4
3,780,245	-				-0.0
3,780,245	-				+0.1
3,780,312	-		DZA65_RS17545	0.11	+0.5
3,780,337	+		DZA65_RS17545	0.12	+0.7
3,780,338	-		DZA65_RS17545	0.12	+0.6
3,780,362	+		DZA65_RS17545	0.13	+0.5
3,780,362	+		DZA65_RS17545	0.13	-0.5
3,780,363	-		DZA65_RS17545	0.13	-0.0
3,780,368	+		DZA65_RS17545	0.14	+1.8
3,780,404	+		DZA65_RS17545	0.15	-2.1
3,780,404	+		DZA65_RS17545	0.15	+0.1
3,780,404	+		DZA65_RS17545	0.15	+1.9
3,780,405	-		DZA65_RS17545	0.15	-1.2
3,780,442	+		DZA65_RS17545	0.17	+0.1
3,780,443	-		DZA65_RS17545	0.17	+0.1
3,780,450	-		DZA65_RS17545	0.17	-0.1
3,780,450	-		DZA65_RS17545	0.17	+0.5
3,780,450	-		DZA65_RS17545	0.17	-1.4
3,780,486	+		DZA65_RS17545	0.19	+1.1
3,780,487	-		DZA65_RS17545	0.19	-0.4
3,780,518	+		DZA65_RS17545	0.20	-0.1
3,780,519	-		DZA65_RS17545	0.21	+0.6
3,780,519	-		DZA65_RS17545	0.21	+0.3
3,780,574	+		DZA65_RS17545	0.23	+0.0
3,780,574	+		DZA65_RS17545	0.23	+0.2
3,780,686	+		DZA65_RS17545	0.28	-0.5
3,780,687	-		DZA65_RS17545	0.28	-1.2
3,780,687	-		DZA65_RS17545	0.28	+1.3
3,780,733	-		DZA65_RS17545	0.30	-0.4
3,780,760	+		DZA65_RS17545	0.32	-1.5
3,780,805	+		DZA65_RS17545	0.34	+0.6
3,780,805	+		DZA65_RS17545	0.34	-0.7
3,780,805	+		DZA65_RS17545	0.34	+0.3
3,780,805	+		DZA65_RS17545	0.34	+1.0
3,780,805	+		DZA65_RS17545	0.34	+0.0
3,780,805	+		DZA65_RS17545	0.34	-0.4
3,780,805	+		DZA65_RS17545	0.34	-0.3
3,780,805	+		DZA65_RS17545	0.34	-0.0
3,780,805	+		DZA65_RS17545	0.34	-0.8
3,780,805	+		DZA65_RS17545	0.34	-0.6
3,780,805	+		DZA65_RS17545	0.34	+0.0
3,780,805	+		DZA65_RS17545	0.34	-0.1
3,780,805	+				-2.1
3,780,805	+		DZA65_RS17545	0.34	-0.6
3,780,805	+		DZA65_RS17545	0.34	-0.4
3,780,805	+		DZA65_RS17545	0.34	+0.0
3,780,806	-		DZA65_RS17545	0.34	+0.6
3,780,806	-		DZA65_RS17545	0.34	+1.0
3,780,806	-		DZA65_RS17545	0.34	-0.9
3,780,806	-		DZA65_RS17545	0.34	-1.1
3,780,806	-		DZA65_RS17545	0.34	-0.7
3,780,806	-		DZA65_RS17545	0.34	-0.9
3,780,806	-		DZA65_RS17545	0.34	-1.9
3,780,806	-		DZA65_RS17545	0.34	+0.2
3,780,806	-		DZA65_RS17545	0.34	-0.5
3,780,806	-		DZA65_RS17545	0.34	+0.5
3,780,806	-		DZA65_RS17545	0.34	-1.2
3,780,806	-		DZA65_RS17545	0.34	+0.7
3,780,806	-				-0.5
3,780,806	-		DZA65_RS17545	0.34	+0.0
3,780,806	-		DZA65_RS17545	0.34	+0.1
3,780,806	-		DZA65_RS17545	0.34	-0.1
3,780,806	-		DZA65_RS17545	0.34	+1.8
3,780,853	-		DZA65_RS17545	0.36	-0.3
3,780,923	+		DZA65_RS17545	0.39	-0.5