Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16280

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,530,933	-		DZA65_RS16275	0.33	-2.6
3,530,939	+		DZA65_RS16275	0.34	-0.2
3,530,939	+		DZA65_RS16275	0.34	-0.7
3,530,939	+		DZA65_RS16275	0.34	-0.1
3,530,939	+		DZA65_RS16275	0.34	+0.0
3,530,940	-		DZA65_RS16275	0.34	+1.1
3,530,940	-		DZA65_RS16275	0.34	-2.0
3,530,940	-		DZA65_RS16275	0.34	-0.4
3,530,995	+		DZA65_RS16275	0.38	-0.9
3,530,995	+		DZA65_RS16275	0.38	-1.6
3,530,996	-		DZA65_RS16275	0.38	-0.7
3,530,996	-		DZA65_RS16275	0.38	+0.5
3,530,996	-		DZA65_RS16275	0.38	-0.0
3,531,001	+		DZA65_RS16275	0.38	-1.3
3,531,002	-		DZA65_RS16275	0.38	+0.7
3,531,002	-		DZA65_RS16275	0.38	-0.5
3,531,037	+		DZA65_RS16275	0.40	-0.1
3,531,048	+		DZA65_RS16275	0.41	-1.2
3,531,049	-		DZA65_RS16275	0.41	-0.9
3,531,049	-		DZA65_RS16275	0.41	+1.4
3,531,080	+		DZA65_RS16275	0.43	+1.5
3,531,080	+		DZA65_RS16275	0.43	-0.0
3,531,081	-		DZA65_RS16275	0.43	-1.1
3,531,103	+		DZA65_RS16275	0.45	-0.1
3,531,103	+		DZA65_RS16275	0.45	+0.9
3,531,103	+		DZA65_RS16275	0.45	+0.3
3,531,104	-		DZA65_RS16275	0.45	-1.2
3,531,104	-		DZA65_RS16275	0.45	+0.9
3,531,104	-		DZA65_RS16275	0.45	-0.2
3,531,203	+		DZA65_RS16275	0.52	-0.9
3,531,204	-		DZA65_RS16275	0.52	-0.5
3,531,204	-		DZA65_RS16275	0.52	+1.4
3,531,219	+		DZA65_RS16275	0.53	-2.2
3,531,219	+		DZA65_RS16275	0.53	+0.4
3,531,220	-		DZA65_RS16275	0.53	+1.2
3,531,220	-		DZA65_RS16275	0.53	-0.6
3,531,220	-		DZA65_RS16275	0.53	+1.6
3,531,257	+		DZA65_RS16275	0.55	+0.2
3,531,257	+		DZA65_RS16275	0.55	+0.2
3,531,258	-		DZA65_RS16275	0.55	+1.0
3,531,258	-		DZA65_RS16275	0.55	-0.3
3,531,285	+		DZA65_RS16275	0.57	-1.0
3,531,285	+		DZA65_RS16275	0.57	+0.6
3,531,285	+		DZA65_RS16275	0.57	+0.2
3,531,285	+		DZA65_RS16275	0.57	-0.5
3,531,285	+		DZA65_RS16275	0.57	-2.4
3,531,286	-		DZA65_RS16275	0.57	+0.4
3,531,286	-		DZA65_RS16275	0.57	-1.2
3,531,299	+		DZA65_RS16275	0.58	+0.7
3,531,299	+		DZA65_RS16275	0.58	-1.4
3,531,300	-		DZA65_RS16275	0.58	-0.4
3,531,300	-		DZA65_RS16275	0.58	+0.3
3,531,300	-		DZA65_RS16275	0.58	-1.5
3,531,332	+		DZA65_RS16275	0.60	+0.7
3,531,359	+		DZA65_RS16275	0.62	-1.9
3,531,430	+				+1.4
3,531,430	+		DZA65_RS16275	0.67	-2.4
3,531,431	-		DZA65_RS16275	0.67	-0.3
3,531,473	+		DZA65_RS16275	0.70	+0.4
3,531,474	-		DZA65_RS16275	0.70	-0.3
3,531,520	+		DZA65_RS16275	0.73	+0.7
3,531,520	+		DZA65_RS16275	0.73	+0.2
3,531,520	+		DZA65_RS16275	0.73	+1.2
3,531,520	+		DZA65_RS16275	0.73	-0.5
3,531,520	+		DZA65_RS16275	0.73	-0.6
3,531,521	-		DZA65_RS16275	0.73	-1.6
3,531,521	-		DZA65_RS16275	0.73	+0.4
3,531,521	-		DZA65_RS16275	0.73	+0.2
3,531,521	-		DZA65_RS16275	0.73	+1.2
3,531,521	-		DZA65_RS16275	0.73	+1.4
3,531,521	-		DZA65_RS16275	0.73	+0.4
3,531,521	-		DZA65_RS16275	0.73	+0.1
3,531,521	-		DZA65_RS16275	0.73	+0.5
3,531,530	+		DZA65_RS16275	0.74	+0.2
3,531,530	+		DZA65_RS16275	0.74	+0.1
3,531,530	+		DZA65_RS16275	0.74	+1.2
3,531,530	+		DZA65_RS16275	0.74	+0.6
3,531,530	+		DZA65_RS16275	0.74	-0.8
3,531,530	+		DZA65_RS16275	0.74	-1.3
3,531,530	+		DZA65_RS16275	0.74	-3.5
3,531,530	+		DZA65_RS16275	0.74	+0.8
3,531,531	-		DZA65_RS16275	0.74	-0.4
3,531,531	-		DZA65_RS16275	0.74	-1.2
3,531,531	-		DZA65_RS16275	0.74	-0.2
3,531,531	-		DZA65_RS16275	0.74	+0.3
3,531,644	-		DZA65_RS16275	0.81	-0.4
3,531,698	+		DZA65_RS16275	0.85	-0.4
3,531,698	+		DZA65_RS16275	0.85	+0.6
3,531,699	-		DZA65_RS16275	0.85	+1.1
3,531,699	-		DZA65_RS16275	0.85	+1.1
3,531,699	-		DZA65_RS16275	0.85	-0.3
3,531,719	+		DZA65_RS16275	0.87	+0.5
3,531,719	+		DZA65_RS16275	0.87	-0.1
3,531,719	+		DZA65_RS16275	0.87	+0.2
3,531,758	-		DZA65_RS16275	0.89	+0.4
3,531,772	-				-0.1
3,531,772	-				+0.1
3,531,772	-				-0.2
3,531,772	-				-0.2
3,531,846	-				-0.0
3,531,862	+				+0.2
3,531,869	+				+0.4
3,531,869	+				+0.6
3,531,869	+				-0.4
3,531,869	+				-1.9
3,531,870	-				-0.2
3,531,870	-				-0.4
3,531,870	-				+0.2
3,531,870	-				-3.1
3,531,903	+				-1.8
3,531,904	+				+1.4
3,531,904	-				-1.4
3,531,911	+				-0.7
3,531,911	+				+1.0
3,531,915	+				-0.4
3,531,915	+				+0.9
3,531,916	-				-0.0
3,531,926	-				+1.2
3,531,957	+				+0.9
3,532,004	+				+0.2
3,532,004	+				+0.1
3,532,019	+				-0.3
3,532,019	+				+1.9
3,532,019	+				-1.4
3,532,019	+				-0.9
3,532,019	+				-2.4
3,532,019	+				+0.4
3,532,020	-				+0.5
3,532,020	-				-1.4
3,532,020	-				+1.6
3,532,020	-				+0.4
3,532,020	-				-1.2
3,532,023	+				+1.0
3,532,023	+				-2.4
3,532,024	-				+0.1
3,532,024	-				+1.4
3,532,024	-				-0.8
3,532,024	-				+1.3
3,532,024	-				-0.3
3,532,024	-				-0.1
3,532,024	-				-2.6
3,532,109	+		DZA65_RS16280	0.17	+0.6
3,532,112	+		DZA65_RS16280	0.17	+0.2
3,532,239	-		DZA65_RS16280	0.27	+0.1
3,532,280	-		DZA65_RS16280	0.31	-0.5
3,532,295	+		DZA65_RS16280	0.32	-0.6
3,532,295	+		DZA65_RS16280	0.32	+0.1
3,532,295	+		DZA65_RS16280	0.32	+1.5
3,532,295	+		DZA65_RS16280	0.32	+0.7
3,532,295	+		DZA65_RS16280	0.32	-0.1
3,532,295	+		DZA65_RS16280	0.32	-0.4
3,532,296	-		DZA65_RS16280	0.32	+0.6
3,532,296	-		DZA65_RS16280	0.32	+0.4
3,532,296	-		DZA65_RS16280	0.32	-0.6
3,532,296	-		DZA65_RS16280	0.32	+0.4
3,532,297	+		DZA65_RS16280	0.32	+2.0
3,532,297	+		DZA65_RS16280	0.32	+0.3
3,532,298	-		DZA65_RS16280	0.32	+0.8
3,532,367	-				+1.0
3,532,367	-		DZA65_RS16280	0.38	+1.1
3,532,463	+		DZA65_RS16280	0.46	+0.6
3,532,464	-		DZA65_RS16280	0.46	+0.5
3,532,544	+		DZA65_RS16280	0.53	+2.0
3,532,550	+		DZA65_RS16280	0.53	-0.0
3,532,551	-		DZA65_RS16280	0.53	+0.7
3,532,551	-		DZA65_RS16280	0.53	-1.0
3,532,551	-		DZA65_RS16280	0.53	+0.4
3,532,570	+		DZA65_RS16280	0.55	+3.1
3,532,628	+		DZA65_RS16280	0.60	+0.1
3,532,628	+		DZA65_RS16280	0.60	-3.6
3,532,628	+		DZA65_RS16280	0.60	+0.6
3,532,644	+		DZA65_RS16280	0.61	-1.9
3,532,645	-		DZA65_RS16280	0.61	-0.1
3,532,645	-		DZA65_RS16280	0.61	-0.3
3,532,677	-		DZA65_RS16280	0.64	+2.6
3,532,677	-		DZA65_RS16280	0.64	-0.3
3,532,678	+		DZA65_RS16280	0.64	-1.6
3,532,678	+		DZA65_RS16280	0.64	+0.1
3,532,678	+		DZA65_RS16280	0.64	-0.0
3,532,679	-		DZA65_RS16280	0.64	-0.1
3,532,679	-		DZA65_RS16280	0.64	+0.5
3,532,679	-		DZA65_RS16280	0.64	-1.3
3,532,679	-		DZA65_RS16280	0.64	-0.4
3,532,679	-		DZA65_RS16280	0.64	-1.3
3,532,679	-		DZA65_RS16280	0.64	-0.1
3,532,679	-		DZA65_RS16280	0.64	+1.3
3,532,720	+		DZA65_RS16280	0.67	+1.3
3,532,720	+		DZA65_RS16280	0.67	-2.8
3,532,721	-		DZA65_RS16280	0.67	-0.7
3,532,721	-		DZA65_RS16280	0.67	+0.1
3,532,721	-		DZA65_RS16280	0.67	-0.6
3,532,721	-		DZA65_RS16280	0.67	-0.3
3,532,721	-		DZA65_RS16280	0.67	-0.1
3,532,721	-		DZA65_RS16280	0.67	-0.1
3,532,723	-		DZA65_RS16280	0.67	-1.3
3,532,723	-		DZA65_RS16280	0.67	-0.1
3,532,723	-		DZA65_RS16280	0.67	+0.5
3,532,742	+		DZA65_RS16280	0.69	+0.1
3,532,743	-		DZA65_RS16280	0.69	-0.3
3,532,882	-				-0.6
3,532,911	+		DZA65_RS16280	0.83	+0.8
3,532,911	+		DZA65_RS16280	0.83	+1.4
3,532,911	+		DZA65_RS16280	0.83	-1.2
3,532,911	+		DZA65_RS16280	0.83	+0.3
3,532,911	+		DZA65_RS16280	0.83	+0.2
3,532,960	+		DZA65_RS16280	0.87	-1.0
3,532,960	+		DZA65_RS16280	0.87	-1.6
3,532,973	+		DZA65_RS16280	0.88	-0.4
3,532,973	+		DZA65_RS16280	0.88	+0.3
3,532,974	-		DZA65_RS16280	0.88	+0.5
3,533,037	-				-0.2
3,533,078	+				+0.1
3,533,092	-				+0.4
3,533,106	+				+0.6
3,533,106	+				+0.5
3,533,119	+				-0.3
3,533,119	+				-1.3
3,533,130	+				-2.1
3,533,135	+				-1.4
3,533,136	-				-0.6
3,533,207	+		DZA65_RS16285	0.17	+0.3
3,533,238	-		DZA65_RS16285	0.24	-1.5
3,533,240	+		DZA65_RS16285	0.25	+0.1
3,533,240	+		DZA65_RS16285	0.25	+0.7
3,533,265	-		DZA65_RS16285	0.31	-1.2
3,533,265	-		DZA65_RS16285	0.31	-0.2
3,533,319	+		DZA65_RS16285	0.44	-0.1
3,533,319	+		DZA65_RS16285	0.44	+0.8
3,533,319	+		DZA65_RS16285	0.44	-0.3
3,533,319	+		DZA65_RS16285	0.44	+0.1
3,533,319	+		DZA65_RS16285	0.44	+2.0
3,533,320	-		DZA65_RS16285	0.44	+0.4
3,533,320	-		DZA65_RS16285	0.44	-0.0
3,533,320	-		DZA65_RS16285	0.44	+0.1
3,533,320	-		DZA65_RS16285	0.44	-0.1
3,533,320	-		DZA65_RS16285	0.44	-0.1
3,533,320	-		DZA65_RS16285	0.44	+0.0
3,533,333	+		DZA65_RS16285	0.47	-0.0
3,533,412	+		DZA65_RS16285	0.66	-0.6
3,533,412	+		DZA65_RS16285	0.66	+0.7
3,533,451	+		DZA65_RS16285	0.75	-0.0
3,533,451	+		DZA65_RS16285	0.75	+0.7
3,533,452	-		DZA65_RS16285	0.75	+0.3
3,533,458	-		DZA65_RS16285	0.77	-2.2
3,533,462	+		DZA65_RS16285	0.78	-0.5
3,533,463	-		DZA65_RS16285	0.78	-2.8
3,533,477	+		DZA65_RS16285	0.81	-0.1
3,533,477	+		DZA65_RS16285	0.81	-0.3
3,533,489	+		DZA65_RS16285	0.84	-0.3
3,533,493	+		DZA65_RS16285	0.85	-0.2
3,533,494	-		DZA65_RS16285	0.85	+0.4
3,533,494	-		DZA65_RS16285	0.85	+0.8
3,533,534	+				+0.4
3,533,586	+				+0.5
3,533,586	+				-0.6
3,533,616	-				-0.7
3,533,631	-		DZA65_RS16290	0.12	-1.1
3,533,631	-		DZA65_RS16290	0.12	-2.4
3,533,633	+		DZA65_RS16290	0.12	+0.0
3,533,634	-		DZA65_RS16290	0.13	+0.6
3,533,671	-		DZA65_RS16290	0.23	+0.2
3,533,671	-		DZA65_RS16290	0.23	-1.5
3,533,727	+		DZA65_RS16290	0.38	-0.3
3,533,816	+		DZA65_RS16290	0.62	+0.1
3,533,816	+		DZA65_RS16290	0.62	+0.4
3,533,817	-		DZA65_RS16290	0.62	+0.6
3,533,817	-		DZA65_RS16290	0.62	+0.6
3,533,817	-		DZA65_RS16290	0.62	-1.0
3,533,817	-		DZA65_RS16290	0.62	-0.2
3,533,901	-		DZA65_RS16290	0.85	-1.9
3,533,901	-		DZA65_RS16290	0.85	+0.9
3,533,940	+				-0.9
3,533,940	+				+1.7
3,533,943	+				+2.3
3,533,943	+				-0.4
3,533,943	+				+0.1
3,533,944	-				+0.1
3,533,975	+				+0.1
3,533,975	+				-1.0
3,533,975	+				+0.0
3,533,976	-				+0.0
3,533,976	-				-2.8
3,533,976	-				-0.1
3,533,980	+				+0.9
3,533,989	+				+0.5
3,533,989	+				+1.1
3,533,989	+				+0.3
3,533,990	-				-1.3
3,533,990	-				-0.6
3,533,990	-				-2.8
3,534,038	+		DZA65_RS16295	0.16	+0.8
3,534,038	+		DZA65_RS16295	0.16	+0.3
3,534,040	+		DZA65_RS16295	0.16	-0.7
3,534,041	-		DZA65_RS16295	0.16	-0.0
3,534,041	-		DZA65_RS16295	0.16	-0.6
3,534,041	-		DZA65_RS16295	0.16	-2.4
3,534,063	-		DZA65_RS16295	0.20	-0.1
3,534,092	+		DZA65_RS16295	0.26	-1.2
3,534,092	+		DZA65_RS16295	0.26	+0.9