Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15145

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,298,742	+				-0.2
3,298,743	-				+0.4
3,298,743	-				+0.4
3,298,782	+				-2.2
3,298,782	+				-0.3
3,298,782	+				+0.7
3,298,782	+				-1.1
3,298,783	-				-0.3
3,298,805	-		DZA65_RS15130	0.12	-1.1
3,298,816	+		DZA65_RS15130	0.17	+0.3
3,298,816	+		DZA65_RS15130	0.17	+0.8
3,298,816	+		DZA65_RS15130	0.17	+0.8
3,298,817	-		DZA65_RS15130	0.18	+0.3
3,298,817	-		DZA65_RS15130	0.18	-0.8
3,298,836	+		DZA65_RS15130	0.27	-2.2
3,298,836	+		DZA65_RS15130	0.27	+1.5
3,298,851	+		DZA65_RS15130	0.34	+1.0
3,298,852	-		DZA65_RS15130	0.35	-0.1
3,298,852	-		DZA65_RS15130	0.35	-0.1
3,298,852	-		DZA65_RS15130	0.35	-0.1
3,298,875	-		DZA65_RS15130	0.46	+0.5
3,298,875	-		DZA65_RS15130	0.46	+0.7
3,298,892	-		DZA65_RS15130	0.54	+0.3
3,298,905	+		DZA65_RS15130	0.61	-0.9
3,298,906	-		DZA65_RS15130	0.61	+0.5
3,298,906	-		DZA65_RS15130	0.61	-1.7
3,298,961	+		DZA65_RS15130	0.88	-0.7
3,298,961	+		DZA65_RS15130	0.88	+0.0
3,298,962	-		DZA65_RS15130	0.89	+0.3
3,298,962	-		DZA65_RS15130	0.89	+0.3
3,298,962	-		DZA65_RS15130	0.89	-1.2
3,298,962	-		DZA65_RS15130	0.89	-1.7
3,299,074	+		DZA65_RS15135	0.28	-0.0
3,299,074	+		DZA65_RS15135	0.28	-0.7
3,299,074	+		DZA65_RS15135	0.28	+0.0
3,299,074	+		DZA65_RS15135	0.28	+1.0
3,299,075	-		DZA65_RS15135	0.28	-0.7
3,299,201	+				-0.4
3,299,201	+				-0.6
3,299,201	+				+0.5
3,299,201	+				+0.1
3,299,202	-				+1.8
3,299,214	+				+0.3
3,299,215	-				-0.1
3,299,215	-				-0.4
3,299,315	+		DZA65_RS15140	0.22	-1.0
3,299,315	+		DZA65_RS15140	0.22	-1.0
3,299,315	+		DZA65_RS15140	0.22	+0.6
3,299,315	+		DZA65_RS15140	0.22	+0.4
3,299,315	+		DZA65_RS15140	0.22	-3.7
3,299,315	+		DZA65_RS15140	0.22	+1.1
3,299,315	+		DZA65_RS15140	0.22	+0.7
3,299,315	+		DZA65_RS15140	0.22	-0.2
3,299,315	+		DZA65_RS15140	0.22	+0.0
3,299,315	+		DZA65_RS15140	0.22	-1.0
3,299,315	+		DZA65_RS15140	0.22	-0.2
3,299,315	+		DZA65_RS15140	0.22	-0.3
3,299,316	-		DZA65_RS15140	0.22	+0.3
3,299,316	-		DZA65_RS15140	0.22	-0.4
3,299,316	-		DZA65_RS15140	0.22	+1.3
3,299,316	-		DZA65_RS15140	0.22	+0.6
3,299,316	-		DZA65_RS15140	0.22	-0.4
3,299,354	+		DZA65_RS15140	0.29	-0.2
3,299,355	-		DZA65_RS15140	0.30	+0.1
3,299,435	-		DZA65_RS15140	0.46	-0.3
3,299,473	-		DZA65_RS15140	0.53	-0.1
3,299,480	+		DZA65_RS15140	0.54	+0.3
3,299,492	+		DZA65_RS15140	0.57	-0.0
3,299,496	-		DZA65_RS15140	0.58	+1.0
3,299,662	+				+0.7
3,299,663	-				-1.1
3,299,663	-				+0.7
3,299,663	-				-1.2
3,299,664	+				-0.5
3,299,664	+				-0.1
3,299,664	+				+1.3
3,299,665	-				+0.2
3,299,665	-				+0.3
3,299,708	+				-0.1
3,299,708	+				-0.2
3,299,748	+		DZA65_RS15145	0.14	+1.0
3,299,748	+		DZA65_RS15145	0.14	-0.8
3,299,749	-		DZA65_RS15145	0.14	-1.6
3,299,749	-		DZA65_RS15145	0.14	-0.4
3,299,749	-		DZA65_RS15145	0.14	+0.2
3,299,749	-		DZA65_RS15145	0.14	-1.1
3,299,862	+		DZA65_RS15145	0.53	-0.9
3,299,862	+		DZA65_RS15145	0.53	-0.1
3,299,862	+		DZA65_RS15145	0.53	-0.4
3,299,862	+		DZA65_RS15145	0.53	+0.3
3,299,862	+		DZA65_RS15145	0.53	-0.3
3,299,863	-		DZA65_RS15145	0.54	-0.2
3,299,863	-		DZA65_RS15145	0.54	-1.0
3,299,863	-		DZA65_RS15145	0.54	-0.5
3,299,863	-		DZA65_RS15145	0.54	-0.8
3,299,863	-		DZA65_RS15145	0.54	-1.7
3,299,954	-		DZA65_RS15145	0.85	-0.0
3,299,962	+		DZA65_RS15145	0.88	-1.2
3,299,963	-		DZA65_RS15145	0.88	+0.3
3,299,999	+				-0.3
3,299,999	+				+0.2
3,299,999	+				+0.3
3,300,000	-				+0.7
3,300,000	-				-1.2
3,300,062	+		DZA65_RS15150	0.28	-1.2
3,300,062	+		DZA65_RS15150	0.28	-1.2
3,300,063	-		DZA65_RS15150	0.28	-1.5
3,300,069	+		DZA65_RS15150	0.31	-1.2
3,300,110	-		DZA65_RS15150	0.48	+0.8
3,300,110	-		DZA65_RS15150	0.48	-1.5
3,300,186	+		DZA65_RS15150	0.79	+0.7
3,300,186	+		DZA65_RS15150	0.79	+0.6
3,300,186	+		DZA65_RS15150	0.79	+0.3
3,300,186	+		DZA65_RS15150	0.79	+0.3
3,300,187	-		DZA65_RS15150	0.79	+1.9
3,300,195	+		DZA65_RS15150	0.83	-2.2
3,300,219	+				-0.6
3,300,219	+				-0.9
3,300,220	-				-0.2
3,300,252	+				+0.9
3,300,252	+				-1.7
3,300,252	+				+0.1
3,300,252	+				+0.3
3,300,252	+				+0.3
3,300,252	+				+1.3
3,300,253	-				-0.2
3,300,253	-				-1.2
3,300,253	-				+0.3
3,300,255	+				+0.1
3,300,255	+				+0.4
3,300,255	+				-2.2
3,300,263	+				-1.0
3,300,377	+		DZA65_RS15155	0.24	-0.1
3,300,377	+		DZA65_RS15155	0.24	-1.1
3,300,377	+		DZA65_RS15155	0.24	+1.2
3,300,377	+		DZA65_RS15155	0.24	+0.1
3,300,377	+		DZA65_RS15155	0.24	-1.1
3,300,377	+		DZA65_RS15155	0.24	-2.0
3,300,377	+		DZA65_RS15155	0.24	+1.2
3,300,377	+		DZA65_RS15155	0.24	-0.5
3,300,377	+		DZA65_RS15155	0.24	-1.2
3,300,378	-		DZA65_RS15155	0.24	+0.9
3,300,378	-		DZA65_RS15155	0.24	+0.1
3,300,378	-		DZA65_RS15155	0.24	-1.6
3,300,378	-		DZA65_RS15155	0.24	+1.7
3,300,406	+		DZA65_RS15155	0.29	+0.7
3,300,406	+		DZA65_RS15155	0.29	-0.4
3,300,406	+		DZA65_RS15155	0.29	-0.7
3,300,407	-		DZA65_RS15155	0.29	-1.2
3,300,485	-		DZA65_RS15155	0.42	-0.1
3,300,485	-		DZA65_RS15155	0.42	+0.8
3,300,485	-		DZA65_RS15155	0.42	-0.7
3,300,735	+		DZA65_RS15155	0.83	+0.3
3,300,735	+		DZA65_RS15155	0.83	+0.5
3,300,759	+		DZA65_RS15155	0.87	-1.2
3,300,784	+				-0.2
3,300,832	+				-0.3
3,300,862	+		DZA65_RS15160	0.11	-0.8
3,300,899	+		DZA65_RS15160	0.25	+0.6
3,300,903	+		DZA65_RS15160	0.27	+0.6
3,300,903	+		DZA65_RS15160	0.27	+0.3
3,300,938	+		DZA65_RS15160	0.41	-1.2
3,300,938	+		DZA65_RS15160	0.41	+0.3
3,300,938	+		DZA65_RS15160	0.41	-1.2
3,300,938	+		DZA65_RS15160	0.41	+0.3
3,300,938	+		DZA65_RS15160	0.41	-0.1
3,300,946	-		DZA65_RS15160	0.44	-2.0
3,300,946	-		DZA65_RS15160	0.44	+1.8
3,300,946	-				+0.3
3,300,974	+		DZA65_RS15160	0.55	+0.2
3,300,974	+		DZA65_RS15160	0.55	+0.0
3,300,974	+		DZA65_RS15160	0.55	-1.0
3,300,974	+		DZA65_RS15160	0.55	-0.7
3,300,974	+		DZA65_RS15160	0.55	+0.0
3,300,975	-		DZA65_RS15160	0.56	+0.3
3,300,975	-				+0.3
3,300,975	-		DZA65_RS15160	0.56	+0.3