Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14655

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,185,939	+		DZA65_RS14645	0.77	+0.3
3,185,939	+		DZA65_RS14645	0.77	-1.6
3,185,940	-		DZA65_RS14645	0.77	-0.5
3,185,940	-		DZA65_RS14645	0.77	-2.0
3,185,940	-		DZA65_RS14645	0.77	-0.2
3,185,940	-		DZA65_RS14645	0.77	-0.8
3,185,940	-		DZA65_RS14645	0.77	-1.7
3,185,941	+		DZA65_RS14645	0.78	-0.3
3,185,941	+		DZA65_RS14645	0.78	+0.0
3,185,941	+		DZA65_RS14645	0.78	-0.3
3,185,942	-		DZA65_RS14645	0.78	-0.1
3,185,942	-		DZA65_RS14645	0.78	+0.4
3,186,052	+				+0.1
3,186,052	+				+0.6
3,186,052	+				-1.2
3,186,052	+				-0.4
3,186,052	+				-0.7
3,186,052	+				+1.7
3,186,052	+				-0.9
3,186,052	+				+0.8
3,186,052	+				-0.7
3,186,052	+				-1.0
3,186,052	+				-0.8
3,186,052	+				+0.3
3,186,052	+				+0.3
3,186,053	-				-2.0
3,186,053	-				+0.6
3,186,053	-				+0.8
3,186,053	-				+0.6
3,186,053	-				+1.3
3,186,053	-				+1.9
3,186,053	-				-2.0
3,186,053	-				+0.4
3,186,053	-				+0.3
3,186,053	-				-0.2
3,186,053	-				-1.3
3,186,053	-				-0.3
3,186,053	-				-0.1
3,186,053	-				+0.4
3,186,066	+				-1.1
3,186,067	-				+0.7
3,186,067	-				-1.4
3,186,067	-				+0.7
3,186,105	+				-1.1
3,186,105	+				+0.1
3,186,105	+				-0.7
3,186,105	+				+0.3
3,186,105	+				-1.5
3,186,106	-				-2.7
3,186,106	-				-0.2
3,186,107	+				+0.3
3,186,107	+				-0.3
3,186,107	+				+0.3
3,186,107	+				-0.2
3,186,107	+				-0.3
3,186,107	+				-0.4
3,186,107	+				+0.3
3,186,107	+				+0.2
3,186,107	+				-0.7
3,186,107	+				+1.9
3,186,108	-				+1.2
3,186,108	-				-0.8
3,186,108	-				-1.8
3,186,108	-				-2.4
3,186,108	-				+0.0
3,186,108	-				+0.4
3,186,108	-				+1.6
3,186,108	-				+0.3
3,186,108	-				+0.3
3,186,108	-				+0.6
3,186,108	-				+0.0
3,186,130	-				-1.3
3,186,265	+		DZA65_RS14650	0.18	-0.1
3,186,265	+		DZA65_RS14650	0.18	+1.3
3,186,266	-		DZA65_RS14650	0.18	+0.5
3,186,266	-		DZA65_RS14650	0.18	+1.4
3,186,266	-		DZA65_RS14650	0.18	-0.6
3,186,306	+		DZA65_RS14650	0.24	-0.3
3,186,307	-		DZA65_RS14650	0.24	+0.9
3,186,307	-		DZA65_RS14650	0.24	-0.2
3,186,307	-		DZA65_RS14650	0.24	-0.3
3,186,307	-		DZA65_RS14650	0.24	+0.1
3,186,307	-				+0.3
3,186,426	+		DZA65_RS14650	0.42	+1.6
3,186,427	-		DZA65_RS14650	0.43	-1.2
3,186,455	-				+0.9
3,186,544	+		DZA65_RS14650	0.61	-0.4
3,186,544	+		DZA65_RS14650	0.61	-0.7
3,186,544	+		DZA65_RS14650	0.61	+0.7
3,186,544	+		DZA65_RS14650	0.61	+0.3
3,186,544	+		DZA65_RS14650	0.61	+0.4
3,186,544	+		DZA65_RS14650	0.61	-0.5
3,186,544	+		DZA65_RS14650	0.61	-0.3
3,186,544	+		DZA65_RS14650	0.61	+0.6
3,186,544	+		DZA65_RS14650	0.61	-2.0
3,186,544	+		DZA65_RS14650	0.61	-0.3
3,186,544	+		DZA65_RS14650	0.61	-0.1
3,186,544	+		DZA65_RS14650	0.61	-1.3
3,186,545	-		DZA65_RS14650	0.61	-0.6
3,186,545	-		DZA65_RS14650	0.61	+0.0
3,186,545	-		DZA65_RS14650	0.61	-0.0
3,186,545	-		DZA65_RS14650	0.61	-0.3
3,186,545	-		DZA65_RS14650	0.61	-0.1
3,186,559	+		DZA65_RS14650	0.63	+0.3
3,186,560	-		DZA65_RS14650	0.63	-1.5
3,186,560	-		DZA65_RS14650	0.63	-1.1
3,186,636	-		DZA65_RS14650	0.75	+0.6
3,186,658	+		DZA65_RS14650	0.78	+0.5
3,186,665	+		DZA65_RS14650	0.80	-1.7
3,186,666	-		DZA65_RS14650	0.80	-0.2
3,186,716	+		DZA65_RS14650	0.87	+1.5
3,186,752	+				-1.5
3,186,752	+				+0.3
3,186,752	+				+0.5
3,186,752	+				+1.3
3,186,753	-				+0.2
3,186,753	-				-0.5
3,186,784	+				-0.5
3,186,790	+				-2.3
3,186,850	+				+0.1
3,186,850	+				+0.1
3,186,851	-				-0.7
3,186,851	-				+1.3
3,186,851	-				-2.7
3,186,851	-				+0.2
3,186,854	+				+1.0
3,186,855	-				+0.6
3,186,855	-				-0.6
3,186,855	-				+0.2
3,186,883	+				-0.2
3,186,883	+				-0.4
3,186,945	+				-0.5
3,186,945	+				-0.3
3,186,945	+				+1.6
3,186,945	+				+0.9
3,186,946	-				+0.1
3,186,946	-				-0.9
3,186,946	-				-0.8
3,186,946	-				+1.4
3,186,992	+				-0.7
3,187,003	+		DZA65_RS14655	0.11	+0.2
3,187,003	+		DZA65_RS14655	0.11	-0.3
3,187,011	+		DZA65_RS14655	0.12	-0.6
3,187,011	+		DZA65_RS14655	0.12	-0.1
3,187,011	+		DZA65_RS14655	0.12	-0.6
3,187,011	+		DZA65_RS14655	0.12	+0.1
3,187,011	+		DZA65_RS14655	0.12	-0.5
3,187,012	-		DZA65_RS14655	0.12	-0.4
3,187,012	-		DZA65_RS14655	0.12	-1.4
3,187,012	-		DZA65_RS14655	0.12	-0.5
3,187,012	-		DZA65_RS14655	0.12	-0.2
3,187,012	-		DZA65_RS14655	0.12	-0.0
3,187,012	-		DZA65_RS14655	0.12	-0.1
3,187,012	-				+1.3
3,187,024	+		DZA65_RS14655	0.14	-0.3
3,187,024	+		DZA65_RS14655	0.14	+1.1
3,187,024	+		DZA65_RS14655	0.14	-0.9
3,187,025	-		DZA65_RS14655	0.14	-1.0
3,187,025	-		DZA65_RS14655	0.14	+0.3
3,187,240	+		DZA65_RS14655	0.39	+0.3
3,187,240	+		DZA65_RS14655	0.39	-0.2
3,187,240	+		DZA65_RS14655	0.39	-0.3
3,187,240	+		DZA65_RS14655	0.39	+1.2
3,187,240	+		DZA65_RS14655	0.39	+0.4
3,187,240	+		DZA65_RS14655	0.39	-1.2
3,187,241	-				+1.9
3,187,241	-		DZA65_RS14655	0.40	+0.0
3,187,241	-		DZA65_RS14655	0.40	-1.3
3,187,241	-		DZA65_RS14655	0.40	+0.5
3,187,241	-		DZA65_RS14655	0.40	-0.8
3,187,241	-		DZA65_RS14655	0.40	-1.0
3,187,268	+		DZA65_RS14655	0.43	-0.8
3,187,342	+		DZA65_RS14655	0.52	+1.1
3,187,342	+		DZA65_RS14655	0.52	-1.1
3,187,342	+		DZA65_RS14655	0.52	-0.8
3,187,342	+				-2.0
3,187,343	-		DZA65_RS14655	0.52	-0.0
3,187,343	-		DZA65_RS14655	0.52	+1.2
3,187,343	-		DZA65_RS14655	0.52	-0.6
3,187,352	-		DZA65_RS14655	0.53	+1.5
3,187,352	-		DZA65_RS14655	0.53	+0.1
3,187,352	-		DZA65_RS14655	0.53	-0.4
3,187,489	-		DZA65_RS14655	0.69	-0.3
3,187,523	+		DZA65_RS14655	0.73	-1.6
3,187,523	+		DZA65_RS14655	0.73	+1.5
3,187,677	-				+0.1
3,187,737	+				+0.5
3,187,737	+				+0.3
3,187,737	+				+0.3
3,187,737	+				-0.2
3,187,738	-				-0.8
3,187,822	+		DZA65_RS14660	0.13	-2.3
3,187,822	+		DZA65_RS14660	0.13	+0.9
3,187,822	+		DZA65_RS14660	0.13	-1.2
3,187,822	+		DZA65_RS14660	0.13	+0.9
3,187,822	+		DZA65_RS14660	0.13	-0.1
3,187,822	+		DZA65_RS14660	0.13	+1.9
3,187,822	+		DZA65_RS14660	0.13	+0.9
3,187,822	+		DZA65_RS14660	0.13	+0.7
3,187,823	-		DZA65_RS14660	0.13	-0.2
3,187,823	-		DZA65_RS14660	0.13	-0.2
3,187,823	-		DZA65_RS14660	0.13	-0.7
3,187,823	-		DZA65_RS14660	0.13	-3.5
3,188,016	+		DZA65_RS14660	0.46	-0.1
3,188,016	+		DZA65_RS14660	0.46	+0.5
3,188,016	+		DZA65_RS14660	0.46	+0.4
3,188,016	+		DZA65_RS14660	0.46	+0.0
3,188,016	+		DZA65_RS14660	0.46	-0.9
3,188,017	-		DZA65_RS14660	0.46	+1.0
3,188,017	-		DZA65_RS14660	0.46	+0.8
3,188,064	+		DZA65_RS14660	0.55	-0.1
3,188,065	-		DZA65_RS14660	0.55	-1.7
3,188,065	-		DZA65_RS14660	0.55	+0.1
3,188,065	-		DZA65_RS14660	0.55	+0.6
3,188,085	-		DZA65_RS14660	0.58	-0.7
3,188,176	-		DZA65_RS14660	0.74	-1.1
3,188,185	+		DZA65_RS14660	0.75	-0.3
3,188,185	+		DZA65_RS14660	0.75	-1.1
3,188,185	+		DZA65_RS14660	0.75	+0.2
3,188,185	+		DZA65_RS14660	0.75	-2.2
3,188,185	+		DZA65_RS14660	0.75	-0.2
3,188,185	+		DZA65_RS14660	0.75	-0.5
3,188,185	+		DZA65_RS14660	0.75	-1.3
3,188,185	+		DZA65_RS14660	0.75	-0.7
3,188,186	-		DZA65_RS14660	0.75	-0.1
3,188,186	-		DZA65_RS14660	0.75	+1.3
3,188,186	-		DZA65_RS14660	0.75	+0.2
3,188,186	-		DZA65_RS14660	0.75	+0.5
3,188,245	-		DZA65_RS14660	0.85	+0.6
3,188,245	-		DZA65_RS14660	0.85	-0.1
3,188,245	-		DZA65_RS14660	0.85	-0.7
3,188,245	-		DZA65_RS14660	0.85	+1.3
3,188,360	+				-0.0
3,188,361	-				-2.7
3,188,361	-				-0.2
3,188,361	-				+1.5
3,188,366	-				-1.7
3,188,398	-				+0.3
3,188,534	+		DZA65_RS14665	0.11	+0.7
3,188,534	+		DZA65_RS14665	0.11	+0.2
3,188,535	-		DZA65_RS14665	0.11	+1.3
3,188,535	-		DZA65_RS14665	0.11	+0.3
3,188,546	+		DZA65_RS14665	0.12	-0.5
3,188,546	+		DZA65_RS14665	0.12	-1.3
3,188,546	+		DZA65_RS14665	0.12	+0.4
3,188,547	-		DZA65_RS14665	0.12	+0.6
3,188,555	+		DZA65_RS14665	0.13	+0.6
3,188,555	+		DZA65_RS14665	0.13	-1.4
3,188,555	+		DZA65_RS14665	0.13	+0.7
3,188,555	+		DZA65_RS14665	0.13	-1.6
3,188,555	+		DZA65_RS14665	0.13	-0.0
3,188,556	-		DZA65_RS14665	0.13	-0.1
3,188,556	-		DZA65_RS14665	0.13	-0.2
3,188,556	-		DZA65_RS14665	0.13	-2.4
3,188,723	+		DZA65_RS14665	0.32	-0.3
3,188,723	+		DZA65_RS14665	0.32	-0.1