Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS13660 and DZA65_RS13665 are separated by 19 nucleotides DZA65_RS13665 and DZA65_RS13670 are separated by 6 nucleotides DZA65_RS13670 and DZA65_RS13675 are separated by 26 nucleotides DZA65_RS13675 and DZA65_RS13680 are separated by 16 nucleotides DZA65_RS13680 and DZA65_RS13685 are separated by 160 nucleotides
DZA65_RS13660: DZA65_RS13660 - ACP S-malonyltransferase, at 2,931,676 to 2,932,605
_RS13660
DZA65_RS13665: DZA65_RS13665 - ketoacyl-ACP synthase III, at 2,932,625 to 2,933,575
_RS13665
DZA65_RS13670: DZA65_RS13670 - phosphate acyltransferase PlsX, at 2,933,582 to 2,934,628
_RS13670
DZA65_RS13675: DZA65_RS13675 - 50S ribosomal protein L32, at 2,934,655 to 2,934,825
_RS13675
DZA65_RS13680: DZA65_RS13680 - 23S rRNA accumulation protein YceD, at 2,934,842 to 2,935,363
_RS13680
DZA65_RS13685: DZA65_RS13685 - septum formation inhibitor Maf, at 2,935,524 to 2,936,108
_RS13685
Position (kb)
2933
2934
2935 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2932.606 kb on - strand at 2932.609 kb on - strand at 2932.609 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2932.612 kb on - strand at 2933.598 kb on - strand at 2933.601 kb on - strand at 2933.601 kb on - strand at 2933.601 kb on - strand at 2933.601 kb on - strand at 2933.610 kb on - strand at 2933.712 kb on - strand at 2933.727 kb on - strand, within DZA65_RS13670 at 2933.727 kb on - strand, within DZA65_RS13670 at 2933.752 kb on - strand, within DZA65_RS13670 at 2933.752 kb on - strand, within DZA65_RS13670 at 2933.752 kb on - strand, within DZA65_RS13670 at 2933.905 kb on + strand, within DZA65_RS13670 at 2933.906 kb on - strand, within DZA65_RS13670 at 2933.970 kb on - strand, within DZA65_RS13670 at 2933.997 kb on + strand, within DZA65_RS13670 at 2933.997 kb on + strand at 2933.998 kb on - strand, within DZA65_RS13670 at 2933.998 kb on - strand, within DZA65_RS13670 at 2933.998 kb on - strand, within DZA65_RS13670 at 2933.998 kb on - strand, within DZA65_RS13670 at 2933.998 kb on - strand, within DZA65_RS13670 at 2934.002 kb on - strand, within DZA65_RS13670 at 2934.002 kb on - strand, within DZA65_RS13670 at 2934.077 kb on - strand, within DZA65_RS13670 at 2934.279 kb on - strand, within DZA65_RS13670 at 2934.370 kb on + strand, within DZA65_RS13670 at 2934.370 kb on + strand, within DZA65_RS13670 at 2934.370 kb on + strand, within DZA65_RS13670 at 2934.370 kb on + strand, within DZA65_RS13670 at 2934.371 kb on - strand, within DZA65_RS13670 at 2934.371 kb on - strand, within DZA65_RS13670 at 2934.371 kb on - strand, within DZA65_RS13670 at 2934.371 kb on - strand, within DZA65_RS13670 at 2934.422 kb on + strand, within DZA65_RS13670 at 2934.422 kb on + strand at 2934.494 kb on - strand, within DZA65_RS13670 at 2934.539 kb on - strand at 2935.497 kb on - strand at 2935.500 kb on + strand at 2935.500 kb on + strand at 2935.500 kb on + strand at 2935.500 kb on + strand at 2935.500 kb on + strand at 2935.501 kb on - strand at 2935.501 kb on - strand at 2935.501 kb on - strand at 2935.505 kb on + strand at 2935.505 kb on + strand at 2935.506 kb on - strand at 2935.506 kb on - strand at 2935.517 kb on + strand at 2935.517 kb on + strand at 2935.523 kb on + strand at 2935.523 kb on + strand at 2935.523 kb on + strand at 2935.524 kb on - strand at 2935.524 kb on - strand at 2935.524 kb on - strand at 2935.535 kb on - strand at 2935.582 kb on + strand at 2935.583 kb on - strand, within DZA65_RS13685
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,932,606 - +0.8 2,932,609 - -0.5 2,932,609 - -2.1 2,932,612 - -0.6 2,932,612 - +0.5 2,932,612 - -0.4 2,932,612 - -2.0 2,932,612 - -0.7 2,932,612 - -0.6 2,932,612 - +0.1 2,932,612 - -0.0 2,932,612 - -1.4 2,932,612 - -0.5 2,932,612 - +0.8 2,932,612 - -1.1 2,932,612 - -1.7 2,932,612 - +0.6 2,933,598 - -1.1 2,933,601 - -0.1 2,933,601 - +0.5 2,933,601 - -0.0 2,933,601 - +0.0 2,933,610 - -0.1 2,933,712 - +1.2 2,933,727 - DZA65_RS13670 0.14 -0.1 2,933,727 - DZA65_RS13670 0.14 -1.0 2,933,752 - DZA65_RS13670 0.16 +0.1 2,933,752 - DZA65_RS13670 0.16 -1.1 2,933,752 - DZA65_RS13670 0.16 -0.5 2,933,905 + DZA65_RS13670 0.31 -2.1 2,933,906 - DZA65_RS13670 0.31 -0.8 2,933,970 - DZA65_RS13670 0.37 -0.1 2,933,997 + DZA65_RS13670 0.40 -0.4 2,933,997 + -0.8 2,933,998 - DZA65_RS13670 0.40 -1.8 2,933,998 - DZA65_RS13670 0.40 -2.8 2,933,998 - DZA65_RS13670 0.40 +0.5 2,933,998 - DZA65_RS13670 0.40 +1.2 2,933,998 - DZA65_RS13670 0.40 +0.8 2,934,002 - DZA65_RS13670 0.40 +0.4 2,934,002 - DZA65_RS13670 0.40 -0.2 2,934,077 - DZA65_RS13670 0.47 -0.4 2,934,279 - DZA65_RS13670 0.67 +0.6 2,934,370 + DZA65_RS13670 0.75 +0.9 2,934,370 + DZA65_RS13670 0.75 -0.8 2,934,370 + DZA65_RS13670 0.75 -0.5 2,934,370 + DZA65_RS13670 0.75 -0.8 2,934,371 - DZA65_RS13670 0.75 -0.5 2,934,371 - DZA65_RS13670 0.75 -1.0 2,934,371 - DZA65_RS13670 0.75 -2.1 2,934,371 - DZA65_RS13670 0.75 -1.8 2,934,422 + DZA65_RS13670 0.80 -0.6 2,934,422 + -1.4 2,934,494 - DZA65_RS13670 0.87 +0.2 2,934,539 - -1.4 2,935,497 - +0.1 2,935,500 + +0.6 2,935,500 + +0.7 2,935,500 + +0.4 2,935,500 + -2.4 2,935,500 + -0.4 2,935,501 - -0.2 2,935,501 - +0.9 2,935,501 - -0.5 2,935,505 + -0.3 2,935,505 + -0.9 2,935,506 - +0.4 2,935,506 - +0.0 2,935,517 + -0.8 2,935,517 + +0.2 2,935,523 + -0.5 2,935,523 + -0.9 2,935,523 + +0.2 2,935,524 - +1.1 2,935,524 - -0.6 2,935,524 - -0.2 2,935,535 - -0.3 2,935,582 + -0.2 2,935,583 - DZA65_RS13685 0.10 +0.1
Or see this region's nucleotide sequence