Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13670

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS13660 and DZA65_RS13665 are separated by 19 nucleotidesDZA65_RS13665 and DZA65_RS13670 are separated by 6 nucleotidesDZA65_RS13670 and DZA65_RS13675 are separated by 26 nucleotidesDZA65_RS13675 and DZA65_RS13680 are separated by 16 nucleotidesDZA65_RS13680 and DZA65_RS13685 are separated by 160 nucleotides DZA65_RS13660: DZA65_RS13660 - ACP S-malonyltransferase, at 2,931,676 to 2,932,605 _RS13660 DZA65_RS13665: DZA65_RS13665 - ketoacyl-ACP synthase III, at 2,932,625 to 2,933,575 _RS13665 DZA65_RS13670: DZA65_RS13670 - phosphate acyltransferase PlsX, at 2,933,582 to 2,934,628 _RS13670 DZA65_RS13675: DZA65_RS13675 - 50S ribosomal protein L32, at 2,934,655 to 2,934,825 _RS13675 DZA65_RS13680: DZA65_RS13680 - 23S rRNA accumulation protein YceD, at 2,934,842 to 2,935,363 _RS13680 DZA65_RS13685: DZA65_RS13685 - septum formation inhibitor Maf, at 2,935,524 to 2,936,108 _RS13685 Position (kb) 2933 2934 2935Strain fitness (log2 ratio) -3 -2 -1 0 1at 2932.606 kb on - strandat 2932.609 kb on - strandat 2932.609 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2932.612 kb on - strandat 2933.598 kb on - strandat 2933.601 kb on - strandat 2933.601 kb on - strandat 2933.601 kb on - strandat 2933.601 kb on - strandat 2933.610 kb on - strandat 2933.712 kb on - strandat 2933.727 kb on - strand, within DZA65_RS13670at 2933.727 kb on - strand, within DZA65_RS13670at 2933.752 kb on - strand, within DZA65_RS13670at 2933.752 kb on - strand, within DZA65_RS13670at 2933.752 kb on - strand, within DZA65_RS13670at 2933.905 kb on + strand, within DZA65_RS13670at 2933.906 kb on - strand, within DZA65_RS13670at 2933.970 kb on - strand, within DZA65_RS13670at 2933.997 kb on + strand, within DZA65_RS13670at 2933.997 kb on + strandat 2933.998 kb on - strand, within DZA65_RS13670at 2933.998 kb on - strand, within DZA65_RS13670at 2933.998 kb on - strand, within DZA65_RS13670at 2933.998 kb on - strand, within DZA65_RS13670at 2933.998 kb on - strand, within DZA65_RS13670at 2934.002 kb on - strand, within DZA65_RS13670at 2934.002 kb on - strand, within DZA65_RS13670at 2934.077 kb on - strand, within DZA65_RS13670at 2934.279 kb on - strand, within DZA65_RS13670at 2934.370 kb on + strand, within DZA65_RS13670at 2934.370 kb on + strand, within DZA65_RS13670at 2934.370 kb on + strand, within DZA65_RS13670at 2934.370 kb on + strand, within DZA65_RS13670at 2934.371 kb on - strand, within DZA65_RS13670at 2934.371 kb on - strand, within DZA65_RS13670at 2934.371 kb on - strand, within DZA65_RS13670at 2934.371 kb on - strand, within DZA65_RS13670at 2934.422 kb on + strand, within DZA65_RS13670at 2934.422 kb on + strandat 2934.494 kb on - strand, within DZA65_RS13670at 2934.539 kb on - strandat 2935.497 kb on - strandat 2935.500 kb on + strandat 2935.500 kb on + strandat 2935.500 kb on + strandat 2935.500 kb on + strandat 2935.500 kb on + strandat 2935.501 kb on - strandat 2935.501 kb on - strandat 2935.501 kb on - strandat 2935.505 kb on + strandat 2935.505 kb on + strandat 2935.506 kb on - strandat 2935.506 kb on - strandat 2935.517 kb on + strandat 2935.517 kb on + strandat 2935.523 kb on + strandat 2935.523 kb on + strandat 2935.523 kb on + strandat 2935.524 kb on - strandat 2935.524 kb on - strandat 2935.524 kb on - strandat 2935.535 kb on - strandat 2935.582 kb on + strandat 2935.583 kb on - strand, within DZA65_RS13685

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,932,606 - +0.8
2,932,609 - -0.5
2,932,609 - -2.1
2,932,612 - -0.6
2,932,612 - +0.5
2,932,612 - -0.4
2,932,612 - -2.0
2,932,612 - -0.7
2,932,612 - -0.6
2,932,612 - +0.1
2,932,612 - -0.0
2,932,612 - -1.4
2,932,612 - -0.5
2,932,612 - +0.8
2,932,612 - -1.1
2,932,612 - -1.7
2,932,612 - +0.6
2,933,598 - -1.1
2,933,601 - -0.1
2,933,601 - +0.5
2,933,601 - -0.0
2,933,601 - +0.0
2,933,610 - -0.1
2,933,712 - +1.2
2,933,727 - DZA65_RS13670 0.14 -0.1
2,933,727 - DZA65_RS13670 0.14 -1.0
2,933,752 - DZA65_RS13670 0.16 +0.1
2,933,752 - DZA65_RS13670 0.16 -1.1
2,933,752 - DZA65_RS13670 0.16 -0.5
2,933,905 + DZA65_RS13670 0.31 -2.1
2,933,906 - DZA65_RS13670 0.31 -0.8
2,933,970 - DZA65_RS13670 0.37 -0.1
2,933,997 + DZA65_RS13670 0.40 -0.4
2,933,997 + -0.8
2,933,998 - DZA65_RS13670 0.40 -1.8
2,933,998 - DZA65_RS13670 0.40 -2.8
2,933,998 - DZA65_RS13670 0.40 +0.5
2,933,998 - DZA65_RS13670 0.40 +1.2
2,933,998 - DZA65_RS13670 0.40 +0.8
2,934,002 - DZA65_RS13670 0.40 +0.4
2,934,002 - DZA65_RS13670 0.40 -0.2
2,934,077 - DZA65_RS13670 0.47 -0.4
2,934,279 - DZA65_RS13670 0.67 +0.6
2,934,370 + DZA65_RS13670 0.75 +0.9
2,934,370 + DZA65_RS13670 0.75 -0.8
2,934,370 + DZA65_RS13670 0.75 -0.5
2,934,370 + DZA65_RS13670 0.75 -0.8
2,934,371 - DZA65_RS13670 0.75 -0.5
2,934,371 - DZA65_RS13670 0.75 -1.0
2,934,371 - DZA65_RS13670 0.75 -2.1
2,934,371 - DZA65_RS13670 0.75 -1.8
2,934,422 + DZA65_RS13670 0.80 -0.6
2,934,422 + -1.4
2,934,494 - DZA65_RS13670 0.87 +0.2
2,934,539 - -1.4
2,935,497 - +0.1
2,935,500 + +0.6
2,935,500 + +0.7
2,935,500 + +0.4
2,935,500 + -2.4
2,935,500 + -0.4
2,935,501 - -0.2
2,935,501 - +0.9
2,935,501 - -0.5
2,935,505 + -0.3
2,935,505 + -0.9
2,935,506 - +0.4
2,935,506 - +0.0
2,935,517 + -0.8
2,935,517 + +0.2
2,935,523 + -0.5
2,935,523 + -0.9
2,935,523 + +0.2
2,935,524 - +1.1
2,935,524 - -0.6
2,935,524 - -0.2
2,935,535 - -0.3
2,935,582 + -0.2
2,935,583 - DZA65_RS13685 0.10 +0.1

Or see this region's nucleotide sequence