Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10965

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,318,308	+		DZA65_RS10955	0.61	-0.9
2,318,308	+		DZA65_RS10955	0.61	-0.9
2,318,309	-		DZA65_RS10955	0.61	-1.4
2,318,309	-		DZA65_RS10955	0.61	-1.9
2,318,309	-		DZA65_RS10955	0.61	-2.4
2,318,488	-		DZA65_RS10955	0.79	+0.1
2,318,488	-		DZA65_RS10955	0.79	-0.9
2,318,488	-		DZA65_RS10955	0.79	-3.7
2,318,677	-				-1.2
2,318,882	+		DZA65_RS10960	0.28	-2.6
2,318,882	+		DZA65_RS10960	0.28	-1.4
2,319,020	-		DZA65_RS10960	0.52	-2.2
2,319,101	+		DZA65_RS10960	0.66	-2.2
2,319,101	+		DZA65_RS10960	0.66	-1.4
2,319,102	-		DZA65_RS10960	0.66	-1.4
2,319,208	+		DZA65_RS10960	0.84	-1.4
2,319,208	+		DZA65_RS10960	0.84	+1.0
2,319,255	-				-0.9
2,319,256	+				-1.9
2,319,256	+				+0.1
2,319,256	+				-1.4
2,319,256	+				-0.9
2,319,256	+				-0.9
2,319,256	+				-1.4
2,319,256	+				-1.6
2,319,256	+				+0.1
2,319,257	-				-1.7
2,319,257	-				-4.2
2,319,257	-				-2.4
2,319,257	-				-1.9
2,319,257	-				-1.0
2,319,257	-				-0.9
2,319,257	-				+0.1
2,319,257	-				-2.7
2,319,257	-				-2.7
2,319,257	-				-2.2
2,319,257	-				-2.2
2,319,260	+				+0.1
2,319,260	+				-1.4
2,319,260	+				+0.1
2,319,260	+				-3.2
2,319,261	-				-2.2
2,319,423	-				-3.0
2,319,448	-				-1.4
2,319,448	-				-1.9
2,319,448	-				-3.0
2,319,448	-				-0.6
2,319,448	-				-3.3
2,319,499	-		DZA65_RS10965	0.13	-2.2
2,319,685	-		DZA65_RS10965	0.25	-1.4
2,319,714	+		DZA65_RS10965	0.27	-3.4
2,319,715	-		DZA65_RS10965	0.27	-0.9
2,319,715	-		DZA65_RS10965	0.27	-2.7
2,319,793	+		DZA65_RS10965	0.32	-1.2
2,319,793	+		DZA65_RS10965	0.32	-1.9
2,319,891	+		DZA65_RS10965	0.38	+0.6
2,319,922	-		DZA65_RS10965	0.40	-2.0
2,319,976	+		DZA65_RS10965	0.43	-1.9
2,319,978	+		DZA65_RS10965	0.43	-2.8
2,319,978	+		DZA65_RS10965	0.43	-1.3
2,319,978	+		DZA65_RS10965	0.43	-2.4
2,319,978	+		DZA65_RS10965	0.43	-0.9
2,319,978	+		DZA65_RS10965	0.43	-0.4
2,319,978	+		DZA65_RS10965	0.43	+0.1
2,319,978	+		DZA65_RS10965	0.43	-0.9
2,319,978	+		DZA65_RS10965	0.43	-1.4
2,319,978	+		DZA65_RS10965	0.43	-1.9
2,319,978	+		DZA65_RS10965	0.43	+0.1
2,319,978	+		DZA65_RS10965	0.43	+0.1
2,319,979	-		DZA65_RS10965	0.44	-1.4
2,319,979	-		DZA65_RS10965	0.44	-2.9
2,319,979	-		DZA65_RS10965	0.44	-1.9
2,319,979	-				+0.1
2,319,979	-		DZA65_RS10965	0.44	-3.0
2,319,979	-		DZA65_RS10965	0.44	-1.5
2,319,979	-		DZA65_RS10965	0.44	-2.0
2,319,979	-		DZA65_RS10965	0.44	-2.7
2,319,979	-		DZA65_RS10965	0.44	-3.6
2,319,979	-		DZA65_RS10965	0.44	-2.7
2,319,979	-		DZA65_RS10965	0.44	-2.7
2,319,979	-		DZA65_RS10965	0.44	-0.9
2,319,979	-		DZA65_RS10965	0.44	-1.4
2,319,987	+		DZA65_RS10965	0.44	+0.1
2,319,987	+		DZA65_RS10965	0.44	-0.9
2,319,987	+		DZA65_RS10965	0.44	-2.9
2,319,987	+		DZA65_RS10965	0.44	-0.9
2,319,987	+		DZA65_RS10965	0.44	-0.3
2,319,987	+		DZA65_RS10965	0.44	-2.4
2,319,987	+		DZA65_RS10965	0.44	+0.9
2,319,987	+		DZA65_RS10965	0.44	-2.4
2,319,988	-		DZA65_RS10965	0.44	-0.9
2,319,988	-		DZA65_RS10965	0.44	-3.0
2,319,988	-		DZA65_RS10965	0.44	-0.7
2,319,988	-		DZA65_RS10965	0.44	-3.2
2,319,988	-		DZA65_RS10965	0.44	-2.4
2,319,988	-		DZA65_RS10965	0.44	-0.7
2,320,020	+		DZA65_RS10965	0.46	-2.9
2,320,020	+		DZA65_RS10965	0.46	-2.2
2,320,128	+		DZA65_RS10965	0.53	+0.1
2,320,129	-		DZA65_RS10965	0.53	-2.7
2,320,336	-		DZA65_RS10965	0.66	+0.1
2,320,344	+		DZA65_RS10965	0.67	-0.9
2,320,345	-		DZA65_RS10965	0.67	+0.1
2,320,345	-		DZA65_RS10965	0.67	-1.4
2,320,494	-		DZA65_RS10965	0.76	+0.4
2,320,534	+		DZA65_RS10965	0.79	-0.9
2,320,574	+		DZA65_RS10965	0.82	+0.1
2,320,574	+		DZA65_RS10965	0.82	-2.2
2,320,574	+		DZA65_RS10965	0.82	-1.9
2,320,575	-		DZA65_RS10965	0.82	-1.9
2,320,575	-		DZA65_RS10965	0.82	-1.4
2,320,868	+				-3.3
2,320,868	+				-2.2
2,320,868	+				-2.4
2,320,875	-				+0.7
2,320,885	+				-0.9
2,320,935	-				-1.1
2,320,956	+				-2.0
2,320,965	+				-2.2
2,320,966	-				+0.6
2,320,966	-				-0.2
2,321,032	+				-0.1
2,321,087	+				+1.1
2,321,088	-				-0.6
2,321,264	+				+0.4
2,321,265	-				+0.4
2,321,265	-				-0.4
2,321,265	-				-0.6
2,321,284	+				+0.3
2,321,347	+		DZA65_RS10970	0.13	-0.3
2,321,408	+		DZA65_RS10970	0.20	+0.5
2,321,408	+		DZA65_RS10970	0.20	+1.0
2,321,409	-		DZA65_RS10970	0.20	-0.6
2,321,409	-		DZA65_RS10970	0.20	-0.1
2,321,409	-		DZA65_RS10970	0.20	-0.0
2,321,410	+		DZA65_RS10970	0.20	-0.3
2,321,494	+		DZA65_RS10970	0.30	-1.3
2,321,495	-		DZA65_RS10970	0.30	-0.3
2,321,538	+		DZA65_RS10970	0.35	-0.9
2,321,538	+		DZA65_RS10970	0.35	+0.1
2,321,538	+		DZA65_RS10970	0.35	+0.1
2,321,539	-		DZA65_RS10970	0.35	-0.1
2,321,541	+		DZA65_RS10970	0.35	+0.7
2,321,684	+		DZA65_RS10970	0.52	+1.6
2,321,759	+		DZA65_RS10970	0.60	+0.1
2,321,759	+		DZA65_RS10970	0.60	-1.4
2,321,779	+		DZA65_RS10970	0.62	-1.3
2,321,780	-		DZA65_RS10970	0.63	+0.4
2,321,784	+		DZA65_RS10970	0.63	+0.4
2,321,784	+		DZA65_RS10970	0.63	+0.1
2,321,784	+		DZA65_RS10970	0.63	-0.3
2,321,784	+		DZA65_RS10970	0.63	+1.0
2,321,784	+		DZA65_RS10970	0.63	+0.3
2,321,784	+		DZA65_RS10970	0.63	+0.1
2,321,785	-		DZA65_RS10970	0.63	+0.1
2,321,785	-		DZA65_RS10970	0.63	+0.3
2,321,785	-		DZA65_RS10970	0.63	-0.2
2,321,785	-		DZA65_RS10970	0.63	+0.9