Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09235

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS09230 and DZA65_RS09235 are separated by 128 nucleotidesDZA65_RS09235 and DZA65_RS09240 are separated by 29 nucleotidesDZA65_RS09240 and DZA65_RS09245 are separated by 74 nucleotides DZA65_RS09230: DZA65_RS09230 - LysR family transcriptional regulator, at 1,947,807 to 1,948,721 _RS09230 DZA65_RS09235: DZA65_RS09235 - 5-oxoprolinase subunit PxpA, at 1,948,850 to 1,949,632 _RS09235 DZA65_RS09240: DZA65_RS09240 - biotin carboxyl carrier domain-containing protein, at 1,949,662 to 1,949,910 _RS09240 DZA65_RS09245: DZA65_RS09245 - acetyl-CoA carboxylase biotin carboxylase subunit, at 1,949,985 to 1,951,370 _RS09245 Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1947.901 kb on + strand, within DZA65_RS09230at 1947.901 kb on + strand, within DZA65_RS09230at 1947.902 kb on - strand, within DZA65_RS09230at 1947.989 kb on - strand, within DZA65_RS09230at 1948.050 kb on + strand, within DZA65_RS09230at 1948.050 kb on + strand, within DZA65_RS09230at 1948.050 kb on + strand, within DZA65_RS09230at 1948.051 kb on - strand, within DZA65_RS09230at 1948.145 kb on + strand, within DZA65_RS09230at 1948.145 kb on + strand, within DZA65_RS09230at 1948.146 kb on - strand, within DZA65_RS09230at 1948.146 kb on - strand, within DZA65_RS09230at 1948.236 kb on - strand, within DZA65_RS09230at 1948.236 kb on - strand, within DZA65_RS09230at 1948.293 kb on + strand, within DZA65_RS09230at 1948.294 kb on - strand, within DZA65_RS09230at 1948.294 kb on - strand, within DZA65_RS09230at 1948.358 kb on + strand, within DZA65_RS09230at 1948.359 kb on - strand, within DZA65_RS09230at 1948.379 kb on - strand, within DZA65_RS09230at 1948.424 kb on + strand, within DZA65_RS09230at 1948.424 kb on + strand, within DZA65_RS09230at 1948.425 kb on - strand, within DZA65_RS09230at 1948.426 kb on + strand, within DZA65_RS09230at 1948.426 kb on + strand, within DZA65_RS09230at 1948.426 kb on + strand, within DZA65_RS09230at 1948.478 kb on + strand, within DZA65_RS09230at 1948.479 kb on - strand, within DZA65_RS09230at 1948.479 kb on - strand, within DZA65_RS09230at 1948.479 kb on - strand, within DZA65_RS09230at 1948.479 kb on - strand, within DZA65_RS09230at 1948.523 kb on + strand, within DZA65_RS09230at 1948.531 kb on + strand, within DZA65_RS09230at 1948.531 kb on + strand, within DZA65_RS09230at 1948.531 kb on + strand, within DZA65_RS09230at 1948.531 kb on + strand, within DZA65_RS09230at 1948.531 kb on + strand, within DZA65_RS09230at 1948.532 kb on - strand, within DZA65_RS09230at 1948.532 kb on - strand, within DZA65_RS09230at 1948.532 kb on - strand, within DZA65_RS09230at 1948.532 kb on - strand, within DZA65_RS09230at 1948.572 kb on + strand, within DZA65_RS09230at 1948.573 kb on - strand, within DZA65_RS09230at 1948.640 kb on + strandat 1948.641 kb on - strandat 1948.696 kb on + strandat 1948.697 kb on - strandat 1948.721 kb on + strandat 1948.721 kb on + strandat 1948.779 kb on - strandat 1948.808 kb on + strandat 1948.820 kb on - strandat 1948.845 kb on + strandat 1948.908 kb on + strandat 1948.933 kb on + strand, within DZA65_RS09235at 1948.933 kb on + strand, within DZA65_RS09235at 1948.933 kb on + strand, within DZA65_RS09235at 1948.933 kb on + strand, within DZA65_RS09235at 1948.933 kb on + strand, within DZA65_RS09235at 1948.933 kb on + strand, within DZA65_RS09235at 1948.934 kb on - strand, within DZA65_RS09235at 1948.934 kb on - strand, within DZA65_RS09235at 1948.940 kb on + strand, within DZA65_RS09235at 1948.940 kb on + strand, within DZA65_RS09235at 1948.940 kb on + strand, within DZA65_RS09235at 1948.940 kb on + strand, within DZA65_RS09235at 1948.941 kb on - strand, within DZA65_RS09235at 1948.941 kb on - strand, within DZA65_RS09235at 1948.941 kb on - strand, within DZA65_RS09235at 1948.941 kb on - strand, within DZA65_RS09235at 1948.941 kb on - strand, within DZA65_RS09235at 1948.941 kb on - strand, within DZA65_RS09235at 1948.942 kb on + strand, within DZA65_RS09235at 1948.942 kb on + strand, within DZA65_RS09235at 1948.943 kb on - strand, within DZA65_RS09235at 1949.086 kb on + strand, within DZA65_RS09235at 1949.086 kb on + strand, within DZA65_RS09235at 1949.087 kb on - strand, within DZA65_RS09235at 1949.127 kb on - strand, within DZA65_RS09235at 1949.162 kb on + strand, within DZA65_RS09235at 1949.162 kb on + strand, within DZA65_RS09235at 1949.162 kb on + strand, within DZA65_RS09235at 1949.162 kb on + strand, within DZA65_RS09235at 1949.169 kb on + strand, within DZA65_RS09235at 1949.204 kb on + strand, within DZA65_RS09235at 1949.204 kb on + strand, within DZA65_RS09235at 1949.205 kb on - strand, within DZA65_RS09235at 1949.205 kb on - strand, within DZA65_RS09235at 1949.205 kb on - strand, within DZA65_RS09235at 1949.205 kb on - strand, within DZA65_RS09235at 1949.206 kb on + strand, within DZA65_RS09235at 1949.206 kb on + strand, within DZA65_RS09235at 1949.206 kb on + strand, within DZA65_RS09235at 1949.206 kb on + strand, within DZA65_RS09235at 1949.206 kb on + strand, within DZA65_RS09235at 1949.206 kb on + strand, within DZA65_RS09235at 1949.206 kb on + strand, within DZA65_RS09235at 1949.206 kb on + strand, within DZA65_RS09235at 1949.207 kb on - strand, within DZA65_RS09235at 1949.207 kb on - strand, within DZA65_RS09235at 1949.207 kb on - strand, within DZA65_RS09235at 1949.207 kb on - strand, within DZA65_RS09235at 1949.207 kb on - strand, within DZA65_RS09235at 1949.207 kb on - strand, within DZA65_RS09235at 1949.554 kb on + strandat 1949.554 kb on + strandat 1949.555 kb on - strandat 1949.614 kb on + strandat 1949.614 kb on + strandat 1949.615 kb on - strandat 1949.749 kb on - strand, within DZA65_RS09240at 1949.772 kb on + strand, within DZA65_RS09240at 1949.914 kb on + strandat 1949.915 kb on - strandat 1949.926 kb on + strandat 1949.926 kb on + strandat 1949.926 kb on + strandat 1949.926 kb on + strandat 1949.927 kb on - strandat 1949.927 kb on - strandat 1949.929 kb on + strandat 1949.929 kb on + strandat 1949.929 kb on + strandat 1949.929 kb on + strandat 1949.929 kb on + strandat 1949.929 kb on + strandat 1949.930 kb on - strandat 1949.930 kb on - strandat 1949.930 kb on - strandat 1949.934 kb on + strandat 1949.934 kb on + strandat 1949.941 kb on + strandat 1949.958 kb on - strandat 1949.960 kb on + strandat 1949.960 kb on + strandat 1949.960 kb on + strandat 1949.960 kb on + strandat 1949.961 kb on - strandat 1950.139 kb on + strand, within DZA65_RS09245at 1950.139 kb on + strand, within DZA65_RS09245at 1950.140 kb on - strand, within DZA65_RS09245at 1950.171 kb on + strand, within DZA65_RS09245at 1950.172 kb on - strand, within DZA65_RS09245at 1950.442 kb on + strand, within DZA65_RS09245at 1950.443 kb on - strand, within DZA65_RS09245at 1950.443 kb on - strand, within DZA65_RS09245at 1950.583 kb on - strand, within DZA65_RS09245at 1950.583 kb on - strand, within DZA65_RS09245at 1950.583 kb on - strand, within DZA65_RS09245at 1950.596 kb on + strand, within DZA65_RS09245at 1950.615 kb on - strand, within DZA65_RS09245

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,947,901 + DZA65_RS09230 0.10 -0.6
1,947,901 + DZA65_RS09230 0.10 -0.9
1,947,902 - DZA65_RS09230 0.10 -0.5
1,947,989 - DZA65_RS09230 0.20 +0.2
1,948,050 + DZA65_RS09230 0.27 +1.2
1,948,050 + DZA65_RS09230 0.27 -0.1
1,948,050 + DZA65_RS09230 0.27 +0.2
1,948,051 - DZA65_RS09230 0.27 +0.0
1,948,145 + DZA65_RS09230 0.37 -1.8
1,948,145 + DZA65_RS09230 0.37 +0.2
1,948,146 - DZA65_RS09230 0.37 +0.2
1,948,146 - DZA65_RS09230 0.37 -0.2
1,948,236 - DZA65_RS09230 0.47 -0.0
1,948,236 - DZA65_RS09230 0.47 -0.8
1,948,293 + DZA65_RS09230 0.53 -0.3
1,948,294 - DZA65_RS09230 0.53 +0.2
1,948,294 - DZA65_RS09230 0.53 -0.9
1,948,358 + DZA65_RS09230 0.60 -0.9
1,948,359 - DZA65_RS09230 0.60 +0.2
1,948,379 - DZA65_RS09230 0.63 -0.5
1,948,424 + DZA65_RS09230 0.67 +0.5
1,948,424 + DZA65_RS09230 0.67 -0.3
1,948,425 - DZA65_RS09230 0.68 +0.5
1,948,426 + DZA65_RS09230 0.68 +0.7
1,948,426 + DZA65_RS09230 0.68 -1.8
1,948,426 + DZA65_RS09230 0.68 -0.2
1,948,478 + DZA65_RS09230 0.73 +0.1
1,948,479 - DZA65_RS09230 0.73 +0.8
1,948,479 - DZA65_RS09230 0.73 -0.4
1,948,479 - DZA65_RS09230 0.73 +0.3
1,948,479 - DZA65_RS09230 0.73 -1.5
1,948,523 + DZA65_RS09230 0.78 -0.2
1,948,531 + DZA65_RS09230 0.79 -1.1
1,948,531 + DZA65_RS09230 0.79 -1.1
1,948,531 + DZA65_RS09230 0.79 -1.8
1,948,531 + DZA65_RS09230 0.79 -1.1
1,948,531 + DZA65_RS09230 0.79 +0.2
1,948,532 - DZA65_RS09230 0.79 -0.1
1,948,532 - DZA65_RS09230 0.79 -0.1
1,948,532 - DZA65_RS09230 0.79 +0.4
1,948,532 - DZA65_RS09230 0.79 -0.5
1,948,572 + DZA65_RS09230 0.84 -0.3
1,948,573 - DZA65_RS09230 0.84 -1.0
1,948,640 + -0.2
1,948,641 - -1.6
1,948,696 + +0.4
1,948,697 - +2.2
1,948,721 + +0.0
1,948,721 + -0.2
1,948,779 - -0.9
1,948,808 + +0.0
1,948,820 - +0.5
1,948,845 + +0.9
1,948,908 + +0.4
1,948,933 + DZA65_RS09235 0.11 -0.1
1,948,933 + DZA65_RS09235 0.11 +0.6
1,948,933 + DZA65_RS09235 0.11 -0.1
1,948,933 + DZA65_RS09235 0.11 +0.2
1,948,933 + DZA65_RS09235 0.11 -0.9
1,948,933 + DZA65_RS09235 0.11 -0.8
1,948,934 - DZA65_RS09235 0.11 -0.8
1,948,934 - DZA65_RS09235 0.11 -0.6
1,948,940 + DZA65_RS09235 0.11 +1.2
1,948,940 + DZA65_RS09235 0.11 +0.3
1,948,940 + DZA65_RS09235 0.11 +0.5
1,948,940 + DZA65_RS09235 0.11 -0.2
1,948,941 - DZA65_RS09235 0.12 -0.1
1,948,941 - DZA65_RS09235 0.12 -0.1
1,948,941 - DZA65_RS09235 0.12 -0.2
1,948,941 - DZA65_RS09235 0.12 +2.2
1,948,941 - DZA65_RS09235 0.12 +3.1
1,948,941 - DZA65_RS09235 0.12 -0.1
1,948,942 + DZA65_RS09235 0.12 +0.6
1,948,942 + DZA65_RS09235 0.12 +0.5
1,948,943 - DZA65_RS09235 0.12 -0.6
1,949,086 + DZA65_RS09235 0.30 -0.1
1,949,086 + DZA65_RS09235 0.30 +0.2
1,949,087 - DZA65_RS09235 0.30 +0.6
1,949,127 - DZA65_RS09235 0.35 +1.5
1,949,162 + DZA65_RS09235 0.40 -0.0
1,949,162 + DZA65_RS09235 0.40 -0.6
1,949,162 + DZA65_RS09235 0.40 +0.7
1,949,162 + DZA65_RS09235 0.40 -0.5
1,949,169 + DZA65_RS09235 0.41 -1.2
1,949,204 + DZA65_RS09235 0.45 +1.6
1,949,204 + DZA65_RS09235 0.45 +0.2
1,949,205 - DZA65_RS09235 0.45 +0.5
1,949,205 - DZA65_RS09235 0.45 -1.5
1,949,205 - DZA65_RS09235 0.45 +0.7
1,949,205 - DZA65_RS09235 0.45 +0.1
1,949,206 + DZA65_RS09235 0.45 -1.8
1,949,206 + DZA65_RS09235 0.45 -0.4
1,949,206 + DZA65_RS09235 0.45 -0.3
1,949,206 + DZA65_RS09235 0.45 +2.2
1,949,206 + DZA65_RS09235 0.45 +1.2
1,949,206 + DZA65_RS09235 0.45 -0.8
1,949,206 + DZA65_RS09235 0.45 +0.0
1,949,206 + DZA65_RS09235 0.45 +0.5
1,949,207 - DZA65_RS09235 0.46 -0.9
1,949,207 - DZA65_RS09235 0.46 -0.0
1,949,207 - DZA65_RS09235 0.46 +0.8
1,949,207 - DZA65_RS09235 0.46 -0.3
1,949,207 - DZA65_RS09235 0.46 -0.1
1,949,207 - DZA65_RS09235 0.46 +1.2
1,949,554 + -1.6
1,949,554 + -0.3
1,949,555 - +1.0
1,949,614 + -0.4
1,949,614 + -0.2
1,949,615 - -0.0
1,949,749 - DZA65_RS09240 0.35 -1.0
1,949,772 + DZA65_RS09240 0.44 -1.5
1,949,914 + -0.8
1,949,915 - +0.2
1,949,926 + -0.2
1,949,926 + -0.9
1,949,926 + +0.9
1,949,926 + +0.8
1,949,927 - +0.5
1,949,927 - -0.1
1,949,929 + +1.0
1,949,929 + +0.6
1,949,929 + +0.4
1,949,929 + +0.2
1,949,929 + +0.2
1,949,929 + +1.1
1,949,930 - -1.2
1,949,930 - +1.0
1,949,930 - -0.4
1,949,934 + -0.7
1,949,934 + +0.3
1,949,941 + -2.6
1,949,958 - -1.3
1,949,960 + -0.2
1,949,960 + +0.2
1,949,960 + +0.2
1,949,960 + -0.4
1,949,961 - +1.7
1,950,139 + DZA65_RS09245 0.11 +0.0
1,950,139 + DZA65_RS09245 0.11 -0.9
1,950,140 - DZA65_RS09245 0.11 -0.4
1,950,171 + DZA65_RS09245 0.13 +0.1
1,950,172 - DZA65_RS09245 0.13 +0.4
1,950,442 + DZA65_RS09245 0.33 -1.8
1,950,443 - DZA65_RS09245 0.33 +0.7
1,950,443 - DZA65_RS09245 0.33 -0.9
1,950,583 - DZA65_RS09245 0.43 +0.6
1,950,583 - DZA65_RS09245 0.43 -0.2
1,950,583 - DZA65_RS09245 0.43 -0.8
1,950,596 + DZA65_RS09245 0.44 +0.4
1,950,615 - DZA65_RS09245 0.45 -0.3

Or see this region's nucleotide sequence