Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS08590 and DZA65_RS08595 overlap by 1 nucleotides DZA65_RS08595 and DZA65_RS08600 are separated by 11 nucleotides
DZA65_RS08590: DZA65_RS08590 - sigma-54-dependent Fis family transcriptional regulator, at 1,814,577 to 1,816,115
_RS08590
DZA65_RS08595: DZA65_RS08595 - type VI secretion system-associated protein TagO, at 1,816,115 to 1,816,678
_RS08595
DZA65_RS08600: DZA65_RS08600 - type VI secretion system protein TssA, at 1,816,690 to 1,818,126
_RS08600
Position (kb)
1816
1817 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1815.642 kb on + strand, within DZA65_RS08590 at 1815.642 kb on + strand, within DZA65_RS08590 at 1815.642 kb on + strand, within DZA65_RS08590 at 1815.642 kb on + strand, within DZA65_RS08590 at 1815.801 kb on + strand, within DZA65_RS08590 at 1815.801 kb on + strand, within DZA65_RS08590 at 1815.802 kb on - strand, within DZA65_RS08590 at 1815.802 kb on - strand, within DZA65_RS08590 at 1815.860 kb on + strand, within DZA65_RS08590 at 1815.861 kb on - strand, within DZA65_RS08590 at 1815.919 kb on + strand, within DZA65_RS08590 at 1815.919 kb on + strand, within DZA65_RS08590 at 1815.919 kb on + strand, within DZA65_RS08590 at 1815.919 kb on + strand, within DZA65_RS08590 at 1815.919 kb on + strand, within DZA65_RS08590 at 1815.919 kb on + strand, within DZA65_RS08590 at 1815.920 kb on - strand, within DZA65_RS08590 at 1815.920 kb on - strand, within DZA65_RS08590 at 1815.923 kb on + strand, within DZA65_RS08590 at 1815.923 kb on + strand, within DZA65_RS08590 at 1815.923 kb on + strand, within DZA65_RS08590 at 1815.923 kb on + strand, within DZA65_RS08590 at 1815.923 kb on + strand, within DZA65_RS08590 at 1815.923 kb on + strand, within DZA65_RS08590 at 1815.923 kb on + strand, within DZA65_RS08590 at 1815.924 kb on - strand, within DZA65_RS08590 at 1815.924 kb on - strand, within DZA65_RS08590 at 1815.924 kb on - strand, within DZA65_RS08590 at 1815.924 kb on - strand, within DZA65_RS08590 at 1815.924 kb on - strand, within DZA65_RS08590 at 1815.924 kb on - strand, within DZA65_RS08590 at 1815.924 kb on - strand, within DZA65_RS08590 at 1815.959 kb on + strand, within DZA65_RS08590 at 1815.959 kb on + strand, within DZA65_RS08590 at 1815.959 kb on + strand, within DZA65_RS08590 at 1815.960 kb on - strand, within DZA65_RS08590 at 1815.960 kb on - strand, within DZA65_RS08590 at 1815.960 kb on - strand, within DZA65_RS08590 at 1815.991 kb on - strand at 1815.991 kb on - strand at 1815.991 kb on - strand at 1816.064 kb on + strand at 1816.065 kb on - strand at 1816.076 kb on + strand at 1816.076 kb on + strand at 1816.077 kb on - strand at 1816.077 kb on - strand at 1816.077 kb on - strand at 1816.233 kb on - strand, within DZA65_RS08595 at 1816.285 kb on + strand, within DZA65_RS08595 at 1816.286 kb on - strand, within DZA65_RS08595 at 1816.289 kb on - strand, within DZA65_RS08595 at 1816.409 kb on - strand, within DZA65_RS08595 at 1816.490 kb on - strand, within DZA65_RS08595 at 1816.619 kb on - strand, within DZA65_RS08595 at 1816.922 kb on + strand, within DZA65_RS08600 at 1816.922 kb on + strand, within DZA65_RS08600 at 1816.990 kb on + strand, within DZA65_RS08600 at 1816.990 kb on + strand, within DZA65_RS08600 at 1816.990 kb on + strand, within DZA65_RS08600 at 1816.991 kb on - strand, within DZA65_RS08600 at 1817.400 kb on + strand, within DZA65_RS08600 at 1817.401 kb on - strand, within DZA65_RS08600 at 1817.401 kb on - strand, within DZA65_RS08600 at 1817.557 kb on + strand, within DZA65_RS08600 at 1817.557 kb on + strand, within DZA65_RS08600 at 1817.557 kb on + strand, within DZA65_RS08600 at 1817.558 kb on - strand, within DZA65_RS08600 at 1817.558 kb on - strand, within DZA65_RS08600 at 1817.558 kb on - strand, within DZA65_RS08600 at 1817.558 kb on - strand, within DZA65_RS08600 at 1817.558 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,815,642 + DZA65_RS08590 0.69 -0.1 1,815,642 + DZA65_RS08590 0.69 +0.1 1,815,642 + DZA65_RS08590 0.69 +0.5 1,815,642 + DZA65_RS08590 0.69 -0.5 1,815,801 + DZA65_RS08590 0.80 -1.7 1,815,801 + DZA65_RS08590 0.80 -1.0 1,815,802 - DZA65_RS08590 0.80 +0.3 1,815,802 - DZA65_RS08590 0.80 -0.1 1,815,860 + DZA65_RS08590 0.83 -0.1 1,815,861 - DZA65_RS08590 0.83 +0.4 1,815,919 + DZA65_RS08590 0.87 +0.3 1,815,919 + DZA65_RS08590 0.87 -1.3 1,815,919 + DZA65_RS08590 0.87 +0.9 1,815,919 + DZA65_RS08590 0.87 -0.3 1,815,919 + DZA65_RS08590 0.87 -0.6 1,815,919 + DZA65_RS08590 0.87 -0.6 1,815,920 - DZA65_RS08590 0.87 -1.2 1,815,920 - DZA65_RS08590 0.87 +0.3 1,815,923 + DZA65_RS08590 0.87 +1.0 1,815,923 + DZA65_RS08590 0.87 +0.4 1,815,923 + DZA65_RS08590 0.87 -0.3 1,815,923 + DZA65_RS08590 0.87 -1.1 1,815,923 + DZA65_RS08590 0.87 -1.3 1,815,923 + DZA65_RS08590 0.87 +0.9 1,815,923 + DZA65_RS08590 0.87 +0.8 1,815,924 - DZA65_RS08590 0.88 +1.0 1,815,924 - DZA65_RS08590 0.88 +1.4 1,815,924 - DZA65_RS08590 0.88 -0.3 1,815,924 - DZA65_RS08590 0.88 -0.6 1,815,924 - DZA65_RS08590 0.88 -1.3 1,815,924 - DZA65_RS08590 0.88 -0.7 1,815,924 - DZA65_RS08590 0.88 -0.7 1,815,959 + DZA65_RS08590 0.90 -0.7 1,815,959 + DZA65_RS08590 0.90 -0.1 1,815,959 + DZA65_RS08590 0.90 -1.3 1,815,960 - DZA65_RS08590 0.90 +0.1 1,815,960 - DZA65_RS08590 0.90 +0.3 1,815,960 - DZA65_RS08590 0.90 -1.3 1,815,991 - +0.1 1,815,991 - -1.3 1,815,991 - +0.7 1,816,064 + +0.6 1,816,065 - +0.2 1,816,076 + +0.6 1,816,076 + +0.5 1,816,077 - -0.7 1,816,077 - +0.1 1,816,077 - -0.7 1,816,233 - DZA65_RS08595 0.21 -0.5 1,816,285 + DZA65_RS08595 0.30 -0.3 1,816,286 - DZA65_RS08595 0.30 -1.0 1,816,289 - DZA65_RS08595 0.31 -0.6 1,816,409 - DZA65_RS08595 0.52 +1.4 1,816,490 - DZA65_RS08595 0.66 -0.8 1,816,619 - DZA65_RS08595 0.89 -0.6 1,816,922 + DZA65_RS08600 0.16 -1.3 1,816,922 + DZA65_RS08600 0.16 -0.0 1,816,990 + DZA65_RS08600 0.21 -0.5 1,816,990 + DZA65_RS08600 0.21 +2.0 1,816,990 + DZA65_RS08600 0.21 -0.3 1,816,991 - DZA65_RS08600 0.21 +0.7 1,817,400 + DZA65_RS08600 0.49 -0.6 1,817,401 - DZA65_RS08600 0.49 -2.5 1,817,401 - DZA65_RS08600 0.49 +0.0 1,817,557 + DZA65_RS08600 0.60 +1.9 1,817,557 + DZA65_RS08600 0.60 -0.4 1,817,557 + DZA65_RS08600 0.60 -0.2 1,817,558 - DZA65_RS08600 0.60 +0.3 1,817,558 - DZA65_RS08600 0.60 +0.3 1,817,558 - DZA65_RS08600 0.60 +0.4 1,817,558 - DZA65_RS08600 0.60 +1.0 1,817,558 - -0.1
Or see this region's nucleotide sequence