Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08020

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS08015 and DZA65_RS08020 are separated by 161 nucleotidesDZA65_RS08020 and DZA65_RS08025 are separated by 157 nucleotides DZA65_RS08015: DZA65_RS08015 - phosphonate ABC transporter ATP-binding protein, at 1,672,994 to 1,673,854 _RS08015 DZA65_RS08020: DZA65_RS08020 - phosphonate ABC transporter substrate-binding protein, at 1,674,016 to 1,674,948 _RS08020 DZA65_RS08025: DZA65_RS08025 - phosphonate ABC transporter, permease protein PhnE, at 1,675,106 to 1,675,969 _RS08025 Position (kb) 1674 1675Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1673.095 kb on + strand, within DZA65_RS08015at 1673.095 kb on + strand, within DZA65_RS08015at 1673.096 kb on - strand, within DZA65_RS08015at 1673.096 kb on - strand, within DZA65_RS08015at 1673.096 kb on - strand, within DZA65_RS08015at 1673.096 kb on - strand, within DZA65_RS08015at 1673.096 kb on - strand, within DZA65_RS08015at 1673.102 kb on + strand, within DZA65_RS08015at 1673.103 kb on - strand, within DZA65_RS08015at 1673.103 kb on - strand, within DZA65_RS08015at 1673.195 kb on - strand, within DZA65_RS08015at 1673.195 kb on - strand, within DZA65_RS08015at 1673.227 kb on + strand, within DZA65_RS08015at 1673.227 kb on + strand, within DZA65_RS08015at 1673.228 kb on - strand, within DZA65_RS08015at 1673.228 kb on - strand, within DZA65_RS08015at 1673.403 kb on + strand, within DZA65_RS08015at 1673.403 kb on + strand, within DZA65_RS08015at 1673.404 kb on - strand, within DZA65_RS08015at 1673.404 kb on - strand, within DZA65_RS08015at 1673.404 kb on - strand, within DZA65_RS08015at 1673.404 kb on - strand, within DZA65_RS08015at 1673.735 kb on + strand, within DZA65_RS08015at 1673.825 kb on + strandat 1673.852 kb on + strandat 1673.852 kb on + strandat 1673.852 kb on + strandat 1673.852 kb on + strandat 1673.853 kb on - strandat 1673.853 kb on - strandat 1673.853 kb on - strandat 1673.886 kb on - strandat 1673.890 kb on + strandat 1673.897 kb on - strandat 1673.911 kb on - strandat 1673.911 kb on - strandat 1673.911 kb on - strandat 1673.933 kb on - strandat 1673.946 kb on + strandat 1673.981 kb on + strandat 1673.981 kb on + strandat 1673.981 kb on + strandat 1673.982 kb on - strandat 1673.982 kb on - strandat 1673.982 kb on - strandat 1674.151 kb on - strand, within DZA65_RS08020at 1674.221 kb on - strand, within DZA65_RS08020at 1674.221 kb on - strand, within DZA65_RS08020at 1674.221 kb on - strand, within DZA65_RS08020at 1674.231 kb on + strand, within DZA65_RS08020at 1674.232 kb on - strand, within DZA65_RS08020at 1674.289 kb on + strand, within DZA65_RS08020at 1674.289 kb on + strand, within DZA65_RS08020at 1674.289 kb on + strand, within DZA65_RS08020at 1674.289 kb on + strand, within DZA65_RS08020at 1674.290 kb on - strand, within DZA65_RS08020at 1674.290 kb on - strand, within DZA65_RS08020at 1674.290 kb on - strand, within DZA65_RS08020at 1674.301 kb on + strand, within DZA65_RS08020at 1674.301 kb on + strand, within DZA65_RS08020at 1674.302 kb on - strand, within DZA65_RS08020at 1674.371 kb on - strand, within DZA65_RS08020at 1674.529 kb on + strand, within DZA65_RS08020at 1674.529 kb on + strand, within DZA65_RS08020at 1674.529 kb on + strand, within DZA65_RS08020at 1674.529 kb on + strand, within DZA65_RS08020at 1674.529 kb on + strand, within DZA65_RS08020at 1674.529 kb on + strand, within DZA65_RS08020at 1674.530 kb on - strand, within DZA65_RS08020at 1674.530 kb on - strand, within DZA65_RS08020at 1674.530 kb on - strand, within DZA65_RS08020at 1674.643 kb on + strand, within DZA65_RS08020at 1674.658 kb on - strand, within DZA65_RS08020at 1674.837 kb on + strand, within DZA65_RS08020at 1674.838 kb on - strand, within DZA65_RS08020at 1674.838 kb on - strand, within DZA65_RS08020at 1674.846 kb on + strand, within DZA65_RS08020at 1674.847 kb on - strand, within DZA65_RS08020at 1674.898 kb on + strandat 1674.898 kb on + strandat 1674.898 kb on + strandat 1674.899 kb on - strandat 1674.899 kb on - strandat 1675.040 kb on + strandat 1675.041 kb on - strandat 1675.128 kb on - strandat 1675.128 kb on - strandat 1675.130 kb on + strandat 1675.130 kb on + strandat 1675.131 kb on - strandat 1675.131 kb on - strandat 1675.171 kb on - strandat 1675.196 kb on + strand, within DZA65_RS08025at 1675.196 kb on + strand, within DZA65_RS08025at 1675.196 kb on + strand, within DZA65_RS08025at 1675.196 kb on + strand, within DZA65_RS08025at 1675.196 kb on + strand, within DZA65_RS08025at 1675.196 kb on + strand, within DZA65_RS08025at 1675.196 kb on + strand, within DZA65_RS08025at 1675.196 kb on + strand, within DZA65_RS08025at 1675.196 kb on + strand, within DZA65_RS08025at 1675.197 kb on - strand, within DZA65_RS08025at 1675.197 kb on - strand, within DZA65_RS08025at 1675.197 kb on - strand, within DZA65_RS08025at 1675.197 kb on - strand, within DZA65_RS08025at 1675.197 kb on - strand, within DZA65_RS08025at 1675.197 kb on - strand, within DZA65_RS08025at 1675.197 kb on - strand, within DZA65_RS08025at 1675.197 kb on - strand, within DZA65_RS08025at 1675.197 kb on - strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.230 kb on + strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.231 kb on - strand, within DZA65_RS08025at 1675.234 kb on + strand, within DZA65_RS08025at 1675.234 kb on + strand, within DZA65_RS08025at 1675.234 kb on + strand, within DZA65_RS08025at 1675.234 kb on + strand, within DZA65_RS08025at 1675.234 kb on + strand, within DZA65_RS08025at 1675.234 kb on + strand, within DZA65_RS08025at 1675.234 kb on + strand, within DZA65_RS08025at 1675.235 kb on - strand, within DZA65_RS08025at 1675.235 kb on - strand, within DZA65_RS08025at 1675.235 kb on - strand, within DZA65_RS08025at 1675.235 kb on - strand, within DZA65_RS08025at 1675.235 kb on - strand, within DZA65_RS08025at 1675.235 kb on - strand, within DZA65_RS08025at 1675.235 kb on - strand, within DZA65_RS08025at 1675.235 kb on - strand, within DZA65_RS08025at 1675.235 kb on - strand, within DZA65_RS08025at 1675.268 kb on + strand, within DZA65_RS08025at 1675.343 kb on + strand, within DZA65_RS08025at 1675.344 kb on - strand, within DZA65_RS08025at 1675.360 kb on + strand, within DZA65_RS08025at 1675.360 kb on + strand, within DZA65_RS08025at 1675.360 kb on + strand, within DZA65_RS08025at 1675.360 kb on + strand, within DZA65_RS08025at 1675.360 kb on + strand, within DZA65_RS08025at 1675.360 kb on + strand, within DZA65_RS08025at 1675.361 kb on - strand, within DZA65_RS08025at 1675.361 kb on - strand, within DZA65_RS08025at 1675.361 kb on - strand, within DZA65_RS08025at 1675.361 kb on - strand, within DZA65_RS08025at 1675.361 kb on - strand, within DZA65_RS08025at 1675.361 kb on - strand, within DZA65_RS08025at 1675.519 kb on - strand, within DZA65_RS08025at 1675.519 kb on - strand, within DZA65_RS08025at 1675.637 kb on + strand, within DZA65_RS08025at 1675.638 kb on - strand, within DZA65_RS08025at 1675.638 kb on - strand, within DZA65_RS08025at 1675.711 kb on + strand, within DZA65_RS08025at 1675.711 kb on + strand, within DZA65_RS08025at 1675.711 kb on + strand, within DZA65_RS08025at 1675.711 kb on + strand, within DZA65_RS08025at 1675.712 kb on - strand, within DZA65_RS08025at 1675.712 kb on - strand, within DZA65_RS08025at 1675.712 kb on - strand, within DZA65_RS08025at 1675.757 kb on + strand, within DZA65_RS08025at 1675.757 kb on + strand, within DZA65_RS08025at 1675.758 kb on - strand, within DZA65_RS08025at 1675.766 kb on - strand, within DZA65_RS08025at 1675.766 kb on - strand, within DZA65_RS08025at 1675.766 kb on - strand, within DZA65_RS08025at 1675.849 kb on + strand, within DZA65_RS08025at 1675.865 kb on + strand, within DZA65_RS08025at 1675.866 kb on - strand, within DZA65_RS08025at 1675.939 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,673,095 + DZA65_RS08015 0.12 -0.7
1,673,095 + DZA65_RS08015 0.12 -0.1
1,673,096 - DZA65_RS08015 0.12 +1.4
1,673,096 - DZA65_RS08015 0.12 +0.3
1,673,096 - DZA65_RS08015 0.12 +0.7
1,673,096 - DZA65_RS08015 0.12 +2.1
1,673,096 - DZA65_RS08015 0.12 +0.8
1,673,102 + DZA65_RS08015 0.13 -0.3
1,673,103 - DZA65_RS08015 0.13 +0.2
1,673,103 - DZA65_RS08015 0.13 +0.3
1,673,195 - DZA65_RS08015 0.23 -0.6
1,673,195 - DZA65_RS08015 0.23 -0.8
1,673,227 + DZA65_RS08015 0.27 +0.8
1,673,227 + DZA65_RS08015 0.27 +0.0
1,673,228 - DZA65_RS08015 0.27 +0.3
1,673,228 - DZA65_RS08015 0.27 +0.8
1,673,403 + DZA65_RS08015 0.48 -1.0
1,673,403 + DZA65_RS08015 0.48 +1.5
1,673,404 - DZA65_RS08015 0.48 -0.2
1,673,404 - DZA65_RS08015 0.48 +0.9
1,673,404 - DZA65_RS08015 0.48 +1.0
1,673,404 - DZA65_RS08015 0.48 -0.1
1,673,735 + DZA65_RS08015 0.86 +2.0
1,673,825 + -0.3
1,673,852 + +0.2
1,673,852 + +0.5
1,673,852 + +2.3
1,673,852 + -1.4
1,673,853 - +0.0
1,673,853 - -1.7
1,673,853 - +0.6
1,673,886 - -1.3
1,673,890 + +0.1
1,673,897 - +0.9
1,673,911 - +0.6
1,673,911 - +0.1
1,673,911 - -0.2
1,673,933 - -0.9
1,673,946 + -1.0
1,673,981 + +0.3
1,673,981 + +0.6
1,673,981 + +1.3
1,673,982 - +0.5
1,673,982 - +0.3
1,673,982 - -1.0
1,674,151 - DZA65_RS08020 0.14 +1.0
1,674,221 - DZA65_RS08020 0.22 +1.5
1,674,221 - DZA65_RS08020 0.22 -0.0
1,674,221 - DZA65_RS08020 0.22 -2.5
1,674,231 + DZA65_RS08020 0.23 -0.3
1,674,232 - DZA65_RS08020 0.23 -0.1
1,674,289 + DZA65_RS08020 0.29 -3.3
1,674,289 + DZA65_RS08020 0.29 +0.3
1,674,289 + DZA65_RS08020 0.29 +1.2
1,674,289 + DZA65_RS08020 0.29 +0.1
1,674,290 - DZA65_RS08020 0.29 -0.1
1,674,290 - DZA65_RS08020 0.29 -1.0
1,674,290 - DZA65_RS08020 0.29 +0.3
1,674,301 + DZA65_RS08020 0.31 +0.4
1,674,301 + DZA65_RS08020 0.31 +1.9
1,674,302 - DZA65_RS08020 0.31 +1.3
1,674,371 - DZA65_RS08020 0.38 +1.1
1,674,529 + DZA65_RS08020 0.55 +0.5
1,674,529 + DZA65_RS08020 0.55 -2.2
1,674,529 + DZA65_RS08020 0.55 +0.6
1,674,529 + DZA65_RS08020 0.55 -0.4
1,674,529 + DZA65_RS08020 0.55 +0.9
1,674,529 + DZA65_RS08020 0.55 +0.7
1,674,530 - DZA65_RS08020 0.55 +0.3
1,674,530 - DZA65_RS08020 0.55 -0.3
1,674,530 - DZA65_RS08020 0.55 -0.0
1,674,643 + DZA65_RS08020 0.67 +0.4
1,674,658 - DZA65_RS08020 0.69 -2.3
1,674,837 + DZA65_RS08020 0.88 -0.1
1,674,838 - DZA65_RS08020 0.88 +0.7
1,674,838 - DZA65_RS08020 0.88 +1.0
1,674,846 + DZA65_RS08020 0.89 +0.5
1,674,847 - DZA65_RS08020 0.89 +0.6
1,674,898 + +0.9
1,674,898 + +0.6
1,674,898 + +0.0
1,674,899 - -0.3
1,674,899 - -0.1
1,675,040 + +0.9
1,675,041 - +1.5
1,675,128 - +0.9
1,675,128 - -0.7
1,675,130 + -1.3
1,675,130 + +0.9
1,675,131 - -0.4
1,675,131 - -0.1
1,675,171 - +0.3
1,675,196 + DZA65_RS08025 0.10 +0.6
1,675,196 + DZA65_RS08025 0.10 -0.0
1,675,196 + DZA65_RS08025 0.10 -0.7
1,675,196 + DZA65_RS08025 0.10 -0.0
1,675,196 + DZA65_RS08025 0.10 -0.5
1,675,196 + DZA65_RS08025 0.10 -0.8
1,675,196 + DZA65_RS08025 0.10 +0.3
1,675,196 + DZA65_RS08025 0.10 +0.0
1,675,196 + DZA65_RS08025 0.10 +0.3
1,675,197 - DZA65_RS08025 0.11 +1.7
1,675,197 - DZA65_RS08025 0.11 +0.0
1,675,197 - DZA65_RS08025 0.11 +0.6
1,675,197 - DZA65_RS08025 0.11 +0.3
1,675,197 - DZA65_RS08025 0.11 -0.0
1,675,197 - DZA65_RS08025 0.11 -0.2
1,675,197 - DZA65_RS08025 0.11 +0.2
1,675,197 - DZA65_RS08025 0.11 -0.1
1,675,197 - DZA65_RS08025 0.11 +0.6
1,675,230 + DZA65_RS08025 0.14 -0.6
1,675,230 + DZA65_RS08025 0.14 +0.6
1,675,230 + DZA65_RS08025 0.14 -1.9
1,675,230 + DZA65_RS08025 0.14 +0.3
1,675,230 + DZA65_RS08025 0.14 +0.6
1,675,230 + DZA65_RS08025 0.14 +0.4
1,675,230 + DZA65_RS08025 0.14 -0.0
1,675,230 + DZA65_RS08025 0.14 +0.8
1,675,230 + DZA65_RS08025 0.14 -0.3
1,675,230 + DZA65_RS08025 0.14 +0.8
1,675,230 + DZA65_RS08025 0.14 -0.1
1,675,230 + DZA65_RS08025 0.14 +0.1
1,675,230 + DZA65_RS08025 0.14 -0.4
1,675,230 + DZA65_RS08025 0.14 +0.4
1,675,231 - DZA65_RS08025 0.14 +0.3
1,675,231 - DZA65_RS08025 0.14 -0.1
1,675,231 - DZA65_RS08025 0.14 -0.6
1,675,231 - DZA65_RS08025 0.14 +0.1
1,675,231 - DZA65_RS08025 0.14 +0.6
1,675,231 - DZA65_RS08025 0.14 +1.1
1,675,231 - DZA65_RS08025 0.14 -0.1
1,675,231 - DZA65_RS08025 0.14 +0.6
1,675,231 - DZA65_RS08025 0.14 -0.5
1,675,231 - DZA65_RS08025 0.14 +0.1
1,675,231 - DZA65_RS08025 0.14 -0.1
1,675,231 - DZA65_RS08025 0.14 +0.5
1,675,231 - DZA65_RS08025 0.14 -0.1
1,675,231 - DZA65_RS08025 0.14 +0.1
1,675,231 - DZA65_RS08025 0.14 -0.4
1,675,231 - DZA65_RS08025 0.14 -1.3
1,675,231 - DZA65_RS08025 0.14 -1.3
1,675,234 + DZA65_RS08025 0.15 -0.3
1,675,234 + DZA65_RS08025 0.15 +0.6
1,675,234 + DZA65_RS08025 0.15 +0.0
1,675,234 + DZA65_RS08025 0.15 +1.6
1,675,234 + DZA65_RS08025 0.15 +0.5
1,675,234 + DZA65_RS08025 0.15 -0.6
1,675,234 + DZA65_RS08025 0.15 -1.0
1,675,235 - DZA65_RS08025 0.15 +0.4
1,675,235 - DZA65_RS08025 0.15 -0.6
1,675,235 - DZA65_RS08025 0.15 -0.4
1,675,235 - DZA65_RS08025 0.15 -0.7
1,675,235 - DZA65_RS08025 0.15 +0.2
1,675,235 - DZA65_RS08025 0.15 -3.2
1,675,235 - DZA65_RS08025 0.15 +0.4
1,675,235 - DZA65_RS08025 0.15 +2.0
1,675,235 - DZA65_RS08025 0.15 -0.4
1,675,268 + DZA65_RS08025 0.19 -0.8
1,675,343 + DZA65_RS08025 0.27 +0.9
1,675,344 - DZA65_RS08025 0.28 -0.1
1,675,360 + DZA65_RS08025 0.29 -0.4
1,675,360 + DZA65_RS08025 0.29 -0.6
1,675,360 + DZA65_RS08025 0.29 +0.5
1,675,360 + DZA65_RS08025 0.29 -2.4
1,675,360 + DZA65_RS08025 0.29 -0.8
1,675,360 + DZA65_RS08025 0.29 +1.6
1,675,361 - DZA65_RS08025 0.30 -1.6
1,675,361 - DZA65_RS08025 0.30 +1.0
1,675,361 - DZA65_RS08025 0.30 -0.9
1,675,361 - DZA65_RS08025 0.30 +0.6
1,675,361 - DZA65_RS08025 0.30 -1.0
1,675,361 - DZA65_RS08025 0.30 -0.0
1,675,519 - DZA65_RS08025 0.48 +0.5
1,675,519 - DZA65_RS08025 0.48 -0.0
1,675,637 + DZA65_RS08025 0.61 -0.3
1,675,638 - DZA65_RS08025 0.62 +1.3
1,675,638 - DZA65_RS08025 0.62 -0.1
1,675,711 + DZA65_RS08025 0.70 -1.3
1,675,711 + DZA65_RS08025 0.70 -0.6
1,675,711 + DZA65_RS08025 0.70 -1.7
1,675,711 + DZA65_RS08025 0.70 +0.8
1,675,712 - DZA65_RS08025 0.70 +0.6
1,675,712 - DZA65_RS08025 0.70 -3.8
1,675,712 - DZA65_RS08025 0.70 +0.1
1,675,757 + DZA65_RS08025 0.75 -0.6
1,675,757 + DZA65_RS08025 0.75 +0.3
1,675,758 - DZA65_RS08025 0.75 +0.8
1,675,766 - DZA65_RS08025 0.76 -0.6
1,675,766 - DZA65_RS08025 0.76 -0.4
1,675,766 - DZA65_RS08025 0.76 -0.7
1,675,849 + DZA65_RS08025 0.86 -0.3
1,675,865 + DZA65_RS08025 0.88 -0.4
1,675,866 - DZA65_RS08025 0.88 -0.2
1,675,939 - +0.4

Or see this region's nucleotide sequence