Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS06890 and DZA65_RS06895 overlap by 4 nucleotides DZA65_RS06895 and DZA65_RS06900 are separated by 12 nucleotides DZA65_RS06900 and DZA65_RS06905 are separated by 94 nucleotides
DZA65_RS06890: DZA65_RS06890 - tol-pal system-associated acyl-CoA thioesterase, at 1,431,257 to 1,431,661
_RS06890
DZA65_RS06895: DZA65_RS06895 - Tol-Pal system protein TolQ, at 1,431,658 to 1,432,344
_RS06895
DZA65_RS06900: DZA65_RS06900 - colicin uptake protein TolR, at 1,432,357 to 1,432,782
_RS06900
DZA65_RS06905: DZA65_RS06905 - cell envelope integrity protein TolA, at 1,432,877 to 1,434,061
_RS06905
Position (kb) 1432
1433 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1431.383 kb on + strand, within DZA65_RS06890 at 1431.383 kb on + strand, within DZA65_RS06890 at 1431.383 kb on + strand, within DZA65_RS06890 at 1431.383 kb on + strand, within DZA65_RS06890 at 1431.383 kb on + strand, within DZA65_RS06890 at 1431.384 kb on - strand, within DZA65_RS06890 at 1431.436 kb on + strand, within DZA65_RS06890 at 1431.452 kb on + strand, within DZA65_RS06890 at 1431.480 kb on + strand, within DZA65_RS06890 at 1431.507 kb on + strand, within DZA65_RS06890 at 1431.507 kb on + strand, within DZA65_RS06890 at 1431.507 kb on + strand, within DZA65_RS06890 at 1431.567 kb on + strand, within DZA65_RS06890 at 1431.567 kb on + strand, within DZA65_RS06890 at 1431.567 kb on + strand, within DZA65_RS06890 at 1431.567 kb on + strand, within DZA65_RS06890 at 1431.585 kb on + strand, within DZA65_RS06890 at 1431.631 kb on + strand at 1431.631 kb on + strand at 1431.631 kb on + strand at 1431.637 kb on + strand at 1431.637 kb on + strand at 1431.637 kb on + strand at 1431.637 kb on + strand at 1431.637 kb on + strand at 1431.672 kb on + strand at 1432.072 kb on + strand, within DZA65_RS06895 at 1432.072 kb on + strand, within DZA65_RS06895 at 1432.072 kb on + strand, within DZA65_RS06895 at 1432.073 kb on - strand, within DZA65_RS06895 at 1432.094 kb on + strand, within DZA65_RS06895 at 1432.094 kb on + strand, within DZA65_RS06895 at 1432.104 kb on + strand, within DZA65_RS06895 at 1432.104 kb on + strand, within DZA65_RS06895 at 1432.104 kb on + strand, within DZA65_RS06895 at 1432.104 kb on + strand, within DZA65_RS06895 at 1432.104 kb on + strand, within DZA65_RS06895 at 1432.104 kb on + strand, within DZA65_RS06895 at 1432.104 kb on + strand, within DZA65_RS06895 at 1432.104 kb on + strand, within DZA65_RS06895 at 1432.231 kb on + strand, within DZA65_RS06895 at 1432.233 kb on + strand, within DZA65_RS06895 at 1432.401 kb on + strand, within DZA65_RS06900 at 1432.401 kb on + strand, within DZA65_RS06900 at 1432.404 kb on + strand, within DZA65_RS06900 at 1432.573 kb on + strand, within DZA65_RS06900 at 1432.838 kb on + strand at 1432.839 kb on - strand at 1432.908 kb on + strand at 1432.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,431,383 + DZA65_RS06890 0.31 -1.2 1,431,383 + DZA65_RS06890 0.31 -1.1 1,431,383 + DZA65_RS06890 0.31 +0.9 1,431,383 + DZA65_RS06890 0.31 -1.6 1,431,383 + DZA65_RS06890 0.31 +0.4 1,431,384 - DZA65_RS06890 0.31 -0.4 1,431,436 + DZA65_RS06890 0.44 +0.0 1,431,452 + DZA65_RS06890 0.48 -0.2 1,431,480 + DZA65_RS06890 0.55 -0.4 1,431,507 + DZA65_RS06890 0.62 +0.6 1,431,507 + DZA65_RS06890 0.62 +0.3 1,431,507 + DZA65_RS06890 0.62 +0.5 1,431,567 + DZA65_RS06890 0.77 -1.8 1,431,567 + DZA65_RS06890 0.77 -1.2 1,431,567 + DZA65_RS06890 0.77 +0.9 1,431,567 + DZA65_RS06890 0.77 +0.6 1,431,585 + DZA65_RS06890 0.81 +0.3 1,431,631 + +0.3 1,431,631 + -0.0 1,431,631 + -1.0 1,431,637 + +0.7 1,431,637 + +0.2 1,431,637 + -2.5 1,431,637 + +0.2 1,431,637 + -0.2 1,431,672 + -0.1 1,432,072 + DZA65_RS06895 0.60 +0.6 1,432,072 + DZA65_RS06895 0.60 +0.9 1,432,072 + DZA65_RS06895 0.60 +0.5 1,432,073 - DZA65_RS06895 0.60 +0.3 1,432,094 + DZA65_RS06895 0.63 -2.1 1,432,094 + DZA65_RS06895 0.63 -1.1 1,432,104 + DZA65_RS06895 0.65 -0.4 1,432,104 + DZA65_RS06895 0.65 +1.6 1,432,104 + DZA65_RS06895 0.65 -1.8 1,432,104 + DZA65_RS06895 0.65 -0.8 1,432,104 + DZA65_RS06895 0.65 -0.1 1,432,104 + DZA65_RS06895 0.65 -2.1 1,432,104 + DZA65_RS06895 0.65 -0.5 1,432,104 + DZA65_RS06895 0.65 -0.9 1,432,231 + DZA65_RS06895 0.83 -1.2 1,432,233 + DZA65_RS06895 0.84 -0.8 1,432,401 + DZA65_RS06900 0.10 -0.7 1,432,401 + DZA65_RS06900 0.10 +0.1 1,432,404 + DZA65_RS06900 0.11 -3.0 1,432,573 + DZA65_RS06900 0.51 -2.6 1,432,838 + -0.3 1,432,839 - +0.8 1,432,908 + +0.4 1,432,909 - -2.2
Or see this region's nucleotide sequence